Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0015622

Physical Location & Seq

Genomic Coordinates Forward (+)

2967444 .. 2969162

Gene Structure 1719 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g05060.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGTCTACATTTCAATCTAATTGGGGTAACTCACCACCCCCAACTTCATTCTCAGCTCCACCATCATCATCTTATAGCAGTATGAGTCCACTAATACTTGTGGTTGTAGTAGTTTTATCTCTTATCTTCTTCTTTGGTGGTCTTGTTCATATGGTTTTGAGATTATTCATGAAGAGGTCATCTTCACCAATCTTTCAATCCAGTAGTAGACATCCAGAAAGCTCTAGCTCTCGAAATCTTCGAAGACAGCTTCAACACCTCTTTAGGTTACACGACTCGGGCCTAGACCAAGCAGTCATAGACTCTCTACCTGTGTTTTGCTGCAAAGACATTGTTGGTTCAGATGAGCAGTTTGATTGTGCTATCTGTCTTTGTGAGTTTTGTGAGCAGGACAAGCTGAGGTTGCTTCCTAATTGTGGTCATGCATTTCATATGGATTGTATTGACACTTGGCTTCTCTCAAATTCAACATGTCCTCTTTGTAGAGGCCCCCTTTTGGGGTCTGTCCTAGTATTGGAATCCCCAGTGTTGAATGTTGATGATTCTAGAGCAATGTCAAGTAGGTTCAGTGGTGATGGAGACAATGGGGGTCTAAGTGGTAGGAGAGTTTTAGCTTTGGAGGAAGCTGGTATCGAAAAGAGGGTGTTTTCGGTGAGACTTGGGAAATTCAGAAGCTCAACAAATGAAGAAATGGGAGAAACAAGTAGGTGTAATTTGGATGCTAGGAGATGCTACTCAATGGGGACATATCAGTATGTAGTTGGTGATTCAAATCTTCAAGTGGCATTGCCCCATGATTGTGTTGGTGGCATTGATACCAAGCTTGACATTGGTGATGAACACTCCAAAGTTGGTGGGAATTTGGAGGGGAAGAAAATCAATGGGTGCCATAAAGGTGAGAGCTTCTCTGTGTCCAAGATCTGGCTATGGAATAAGAAGAACAAATTCCCAGGCTCTTTGAATACTCATAATGGTATGCCTTCTTTTACTGTAACTTCTCCAATCGATGATGGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

340

Amino Acids

37.2

Weight (kDa)

6.55

Isoelectric Point (pI)

62.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	119 - 162	1.2e-14	Ring finger domain
zf-RING_11	PF17123	119 - 148	5e-09	RING-like zinc finger
zf-rbx1	PF12678	125 - 162	3.9e-08	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015622)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05060
malus_domestica	MD00G1171600.v1.1 MD14G1184200.v1.1
prunus_persica	Prupe.5G176800_v2.0.a1
pyrus_communis	pycom06g15800 pycom14g15320
rosa_chinensis	RchiOBHm_Chr7g0193981
rosa_laevigata	RLG00000004226
rosa_multiflora	Rmu_sc0002389.1_g000005
rosa_roxburghii	Rroxscaffold_3G00261650
rosa_rugosa	Rorug07G0013000
rosa_samantha	Rh7AG140100 Rh7BG140500 Rh7CG144100 Rh7DG141400
rosa_wichuraiana	Rw7G011950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	293
AccB1I	GGYRCC	1 cut(s)	885
AccB7I	CCANNNNNTGG	1 cut(s)	921
AccI	GTMKAC	2 cut(s)	5, 208
AcsI	RAATTY	4 cut(s)	463, 665, 859, 944
AfiI	CCNNNNNNNGG	6 cut(s)	416, 496, 497, 498, 514, 921
AflIII	ACRYGT	1 cut(s)	470
AgsI	TTSAA	8 cut(s)	14, 197, 254, 468, 532, 771, 779, 961
AjnI	CCWGG	1 cut(s)	949
Alw26I	GTCTC	2 cut(s)	573, 649
Ama87I	CYCGRG	1 cut(s)	277
AoxI	GGCC	2 cut(s)	280, 487
ApeKI	GCWGC	1 cut(s)	321
ApoI	RAATTY	4 cut(s)	463, 665, 859, 944
Asp700I	GAANNNNTTC	1 cut(s)	944
AspS9I	GGNCC	2 cut(s)	280, 488
AsuHPI	GGTGA	7 cut(s)	24, 177, 584, 664, 776, 845, 908
AsuII	TTCGAA	1 cut(s)	241
AvaI	CYCGRG	1 cut(s)	277
BanI	GGYRCC	1 cut(s)	885
BbsI	GAAGAC	1 cut(s)	250
BbvCI	CCTCAGC	1 cut(s)	398
BbvI	GCAGC	1 cut(s)	308
BccI	CCATC	3 cut(s)	70, 569, 1004
BciT130I	CCWGG	1 cut(s)	951
BcoDI	GTCTC	2 cut(s)	573, 649
BfaI	CTAG	5 cut(s)	225, 284, 509, 546, 723
BglII	AGATCT	1 cut(s)	918
BisI	GCNGC	1 cut(s)	322
BlsI	GCNGC	1 cut(s)	323
Bme1390I	CCNGG	1 cut(s)	951
BmeT110I	CYCGRG	1 cut(s)	277
BmgT120I	GGNCC	2 cut(s)	280, 488
BmiI	GGNNCC	2 cut(s)	490, 887
BmrFI	CCNGG	1 cut(s)	951
BmrI	ACTGGG	1 cut(s)	518
BmsI	GCATC	2 cut(s)	709, 719
BmuI	ACTGGG	1 cut(s)	518
BpiI	GAAGAC	1 cut(s)	250
BplI	GAGNNNNNCTC	2 cut(s)	890, 922
Bpu10I	CCTNAGC	1 cut(s)	398
Bpu14I	TTCGAA	1 cut(s)	241
Bsa29I	ATCGAT	1 cut(s)	1005
BsaBI	GATNNNNATC	1 cut(s)	771
BsaJI	CCNNGG	1 cut(s)	949
Bsc4I	CCNNNNNNNGG	6 cut(s)	416, 496, 497, 498, 514, 921
Bse1I	ACTGG	2 cut(s)	201, 524
Bse3DI	GCAATG	2 cut(s)	558, 785
Bse8I	GATNNNNATC	1 cut(s)	771
BseBI	CCWGG	1 cut(s)	951
BseCI	ATCGAT	1 cut(s)	1005
BseDI	CCNNGG	1 cut(s)	949
BseGI	GGATG	2 cut(s)	211, 724
BseJI	GATNNNNATC	1 cut(s)	771
BseLI	CCNNNNNNNGG	6 cut(s)	416, 496, 497, 498, 514, 921
BseMI	GCAATG	2 cut(s)	558, 785
BseMII	CTCAG	2 cut(s)	66, 389
BseNI	ACTGG	2 cut(s)	201, 524
BseXI	GCAGC	1 cut(s)	308
BshFI	GGCC	2 cut(s)	282, 489
BshNI	GGYRCC	1 cut(s)	885
BshVI	ATCGAT	1 cut(s)	1005
BsiHKCI	CYCGRG	1 cut(s)	277
BslFI	GGGAC	1 cut(s)	757
BslI	CCNNNNNNNGG	6 cut(s)	416, 496, 497, 498, 514, 921
BsmAI	GTCTC	2 cut(s)	573, 649
BsmFI	GGGAC	1 cut(s)	757
BsnI	GGCC	2 cut(s)	282, 489
BsoBI	CYCGRG	1 cut(s)	277
Bsp119I	TTCGAA	1 cut(s)	241
Bsp143I	GATC	1 cut(s)	918
BspANI	GGCC	2 cut(s)	282, 489
BspCNI	CTCAG	2 cut(s)	65, 390
BspDI	ATCGAT	1 cut(s)	1005
BspHI	TCATGA	1 cut(s)	168
BspLI	GGNNCC	2 cut(s)	490, 887
BspT104I	TTCGAA	1 cut(s)	241
BspT107I	GGYRCC	1 cut(s)	885
BsrDI	GCAATG	2 cut(s)	558, 785
BsrI	ACTGG	2 cut(s)	201, 524
BssECI	CCNNGG	1 cut(s)	949
BssMI	GATC	1 cut(s)	918
Bst2UI	CCWGG	1 cut(s)	951
Bst4CI	ACNGT	1 cut(s)	991
Bst6I	CTCTTC	1 cut(s)	167
BstBI	TTCGAA	1 cut(s)	241
BstDEI	CTNAG	3 cut(s)	52, 398, 593
BstF5I	GGATG	2 cut(s)	211, 724
BstKTI	GATC	1 cut(s)	921
BstMAI	GTCTC	2 cut(s)	573, 649
BstMBI	GATC	1 cut(s)	918
BstMWI	GCNNNNNNNGC	2 cut(s)	394, 403
BstNI	CCWGG	1 cut(s)	951
BstNSI	RCATGY	1 cut(s)	474
BstSCI	CCNGG	1 cut(s)	949
BstV1I	GCAGC	1 cut(s)	308
BstV2I	GAAGAC	1 cut(s)	250
BstX2I	RGATCY	1 cut(s)	918
BstYI	RGATCY	1 cut(s)	918
Bsu15I	ATCGAT	1 cut(s)	1005
BsuRI	GGCC	2 cut(s)	282, 489
BsuTUI	ATCGAT	1 cut(s)	1005
BtsCI	GGATG	2 cut(s)	211, 724
BtsIMutI	CAGTG	2 cut(s)	531, 574
CciI	TCATGA	1 cut(s)	168
Cfr13I	GGNCC	2 cut(s)	280, 488
ClaI	ATCGAT	1 cut(s)	1005
CspCI	CAANNNNNGTGG	2 cut(s)	835, 870
CviAII	CATG	5 cut(s)	169, 422, 471, 794, 1017
DdeI	CTNAG	3 cut(s)	52, 398, 593
DpnI	GATC	1 cut(s)	920
DpnII	GATC	1 cut(s)	918
DrdI	GACNNNNNNGTC	1 cut(s)	293
DseDI	GACNNNNNNGTC	1 cut(s)	293
Eam1104I	CTCTTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	167
Eco88I	CYCGRG	1 cut(s)	277
EcoO109I	RGGNCCY	1 cut(s)	488
EcoRII	CCWGG	1 cut(s)	949
EcoT22I	ATGCAT	1 cut(s)	427
FaeI	CATG	5 cut(s)	172, 425, 474, 797, 1020
FaqI	GGGAC	1 cut(s)	757
FatI	CATG	5 cut(s)	168, 421, 470, 793, 1016
FauNDI	CATATG	2 cut(s)	150, 432
FblI	GTMKAC	2 cut(s)	5, 208
Fnu4HI	GCNGC	1 cut(s)	322
FokI	GGATG	2 cut(s)	198, 731
Fsp4HI	GCNGC	1 cut(s)	322
FspBI	CTAG	5 cut(s)	225, 284, 509, 546, 723
GluI	GCNGC	1 cut(s)	322
HaeIII	GGCC	2 cut(s)	282, 489
Hin1II	CATG	5 cut(s)	172, 425, 474, 797, 1020
HindIII	AAGCTT	1 cut(s)	821
HinfI	GANTC	6 cut(s)	85, 275, 302, 518, 542, 767
HphI	GGTGA	7 cut(s)	24, 177, 584, 664, 776, 845, 908
Hpy166II	GTNNAC	3 cut(s)	6, 89, 209
Hpy188I	TCNGA	2 cut(s)	343, 671
Hpy188III	TCNNGA	4 cut(s)	169, 215, 231, 546
Hpy8I	GTNNAC	3 cut(s)	6, 89, 209
HpyAV	CCTTC	1 cut(s)	990
HpyCH4III	ACNGT	1 cut(s)	991
HpyCH4V	TGCA	2 cut(s)	324, 425
HpyF10VI	GCNNNNNNNGC	2 cut(s)	394, 403
HpyF3I	CTNAG	3 cut(s)	52, 398, 593
Hsp92II	CATG	5 cut(s)	172, 425, 474, 797, 1020
Kzo9I	GATC	1 cut(s)	918
LmnI	GCTCC	1 cut(s)	61
LpnPI	CCDG	9 cut(s)	214, 228, 324, 374, 537, 612, 907, 936, 963
Lsp1109I	GCAGC	1 cut(s)	308
LweI	GCATC	2 cut(s)	709, 719
MaeI	CTAG	5 cut(s)	225, 284, 509, 546, 723
MaeIII	GTNAC	3 cut(s)	26, 267, 991
MalI	GATC	1 cut(s)	920
MboI	GATC	1 cut(s)	918
MflI	RGATCY	1 cut(s)	918
MluCI	AATT	7 cut(s)	19, 412, 463, 665, 712, 859, 944
MlyI	GAGTC	3 cut(s)	94, 269, 296
MnlI	CCTC	8 cut(s)	168, 269, 393, 479, 486, 613, 633, 859
Mph1103I	ATGCAT	1 cut(s)	427
MroXI	GAANNNNTTC	1 cut(s)	944
MslI	CAYNNNNRTG	2 cut(s)	798, 894
MspR9I	CCNGG	1 cut(s)	951
MvaI	CCWGG	1 cut(s)	951
MwoI	GCNNNNNNNGC	2 cut(s)	394, 403
NdeI	CATATG	2 cut(s)	150, 432
NdeII	GATC	1 cut(s)	918
NlaIII	CATG	5 cut(s)	172, 425, 474, 797, 1020
NlaIV	GGNNCC	2 cut(s)	490, 887
NsiI	ATGCAT	1 cut(s)	427
NspI	RCATGY	1 cut(s)	474
NspV	TTCGAA	1 cut(s)	241
PagI	TCATGA	1 cut(s)	168
PciI	ACATGT	1 cut(s)	470
PcsI	WCGNNNNNNNCGW	1 cut(s)	238
PdmI	GAANNNNTTC	1 cut(s)	944
PfeI	GAWTC	3 cut(s)	518, 542, 767
PflMI	CCANNNNNTGG	1 cut(s)	921
PkrI	GCNGC	1 cut(s)	323
PleI	GAGTC	3 cut(s)	93, 269, 296
PpsI	GAGTC	3 cut(s)	93, 269, 296
PscI	ACATGT	1 cut(s)	470
Psp6I	CCWGG	1 cut(s)	949
PspGI	CCWGG	1 cut(s)	949
PspN4I	GGNNCC	2 cut(s)	490, 887
PspPI	GGNCC	2 cut(s)	280, 488
PsuI	RGATCY	1 cut(s)	918
RseI	CAYNNNNRTG	2 cut(s)	798, 894
SatI	GCNGC	1 cut(s)	322
Sau3AI	GATC	1 cut(s)	918
Sau96I	GGNCC	2 cut(s)	280, 488
SchI	GAGTC	3 cut(s)	94, 269, 296
ScrFI	CCNGG	1 cut(s)	951
SfaNI	GCATC	2 cut(s)	709, 719
SfuI	TTCGAA	1 cut(s)	241
SmiMI	CAYNNNNRTG	2 cut(s)	798, 894
Sse9I	AATT	7 cut(s)	19, 412, 463, 665, 712, 859, 944
SspMI	CTAG	5 cut(s)	225, 284, 509, 546, 723
StyD4I	CCNGG	1 cut(s)	949
TaaI	ACNGT	1 cut(s)	991
TaqI	TCGA	4 cut(s)	232, 241, 633, 1005
TasI	AATT	7 cut(s)	19, 412, 463, 665, 712, 859, 944
TfiI	GAWTC	3 cut(s)	518, 542, 767
TscAI	CASTG	2 cut(s)	531, 574
TseI	GCWGC	1 cut(s)	321
TspDTI	ATGAA	7 cut(s)	36, 137, 157, 185, 419, 699, 852
TspRI	CASTG	2 cut(s)	531, 574
Van91I	CCANNNNNTGG	1 cut(s)	921
XapI	RAATTY	4 cut(s)	463, 665, 859, 944
XbaI	TCTAGA	1 cut(s)	545
XceI	RCATGY	1 cut(s)	474
XcmI	CCANNNNNNNNNTGG	1 cut(s)	800
XmiI	GTMKAC	2 cut(s)	5, 208
XmnI	GAANNNNTTC	1 cut(s)	944
XspI	CTAG	5 cut(s)	225, 284, 509, 546, 723
Zsp2I	ATGCAT	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.