Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0015622

Physical Location & Seq

Genomic Coordinates Forward (+)

55854581 .. 55856456

Gene Structure 1876 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00261650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGTCTACAATTCAGTCTGAGCTGAACCAGGAAGATGCTAATTGGAGAAACTCACCACCCCCAACTTCATTTTCAGCTCCACCATCTTCAGTTCATAGCAGTATGAGTCCGCTATTTCTTGTGGTTGTAGTAGTTCTAGCTGTTATCTTCTTCATTGGTGGTCTTTTTCATTTGGTTTTACGATTCTTCATAAAGAGGTCATCTTCCCCACTCTTTCAATCCAGTAATAGACACCCAGAAAGCTCTAGCTCTCGAAATCTTCGAAGACAGCTTCAACACCTCTTTCACTTACACGACTTGGGCCTGGACCAAGCTGTCATAGACTCTCTGCCTGTGTTCTGCTGCAAAGACATTGTTGGTTCAGACGAGCAATTTGACTGTGCTATCTGTCTGTGTGAGTTTTCTGAGCAGGACAAGCTGAGGTTGCTTCCTAATTGTGGTCATGCATTTCATATGGATTGTATCGACACTTGGCTTCTCTCAAATTCAACATGCCCTCTTTGTAGAGGCACCCTTTTGGGCTCTGGTCTAGTATTGGAAAACCCAGTGTTGAATTTTGATGATTCTAGAGCAATTTCAAGTAGGCGCAATGGTGATGGAGACAATGGGGGTTTAAGTGGTCGGAGAGTCTTAGCTTTGGAGGAAGCTGCTGTTGAAAAGAGGGTGTTTTCGGTGAGACTTGGGAAGTTCAGGAGCTCCACGAACGAAGGAGTAGGAGAAACAAGCAGGTGTAATTTGGATGCTAGGAGATGCTACTCAATGGGGACATATCAGTATGTGGTTGGTGATTCAAATCTTCAAGTGGTCTTGTCGCATGATTGTGGTGGAGGCACTGATACTAAGCTTGATATTGATGATGAACACTTTAAAGTTGGTGGGAACTTGGAGGGGAAGAAAATCAATGGGTGTCATAAAGGTGAGAGCTTCTCTGTGTCCAAGATCTGGCTTTGGTCTAAGAAGAACAAATTCCCAGGCTCTTTGAACACTCATACCGATATGCCTTCTTTTACTGTAACTTCTCCAATCAATGGTGGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

346

Amino Acids

38.08

Weight (kDa)

6.45

Isoelectric Point (pI)

55.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-ANAPC11	PF12861	124 - 171	6.9e-06	Anaphase-promoting complex subunit 11 RING-H2 finger
zf-RING_2	PF13639	126 - 169	1.4e-15	Ring finger domain
zf-RING_11	PF17123	126 - 155	3.2e-10	RING-like zinc finger
zf-rbx1	PF12678	126 - 169	1.2e-09	RING-H2 zinc finger domain
zf-RING_5	PF14634	126 - 169	4.6e-06	zinc-RING finger domain
zf-C3HC4	PF00097	127 - 168	7.4e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	127 - 168	1.7e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015622)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05060
malus_domestica	MD00G1171600.v1.1 MD14G1184200.v1.1
prunus_persica	Prupe.5G176800_v2.0.a1
pyrus_communis	pycom06g15800 pycom14g15320
rosa_chinensis	RchiOBHm_Chr7g0193981
rosa_laevigata	RLG00000004226
rosa_multiflora	Rmu_sc0002389.1_g000005
rosa_roxburghii	Rroxscaffold_3G00261650
rosa_rugosa	Rorug07G0013000
rosa_samantha	Rh7AG140100 Rh7BG140500 Rh7CG144100 Rh7DG141400
rosa_wichuraiana	Rw7G011950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	717
AasI	GACNNNNNNGTC	1 cut(s)	314
Acc36I	ACCTGC	1 cut(s)	717
AccB1I	GGYRCC	1 cut(s)	509
AccB7I	CCANNNNNTGG	2 cut(s)	942, 1028
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	1 cut(s)	110
AcsI	RAATTY	3 cut(s)	484, 553, 965
AcuI	CTGAAG	1 cut(s)	72
AfiI	CCNNNNNNNGG	3 cut(s)	437, 942, 1028
AgsI	TTSAA	9 cut(s)	218, 275, 489, 553, 579, 656, 792, 800, 982
AjnI	CCWGG	3 cut(s)	27, 303, 970
AjuI	GAANNNNNNNTTGG	2 cut(s)	55, 87
Alw21I	GWGCWC	1 cut(s)	698
Alw26I	GTCTC	2 cut(s)	594, 670
AoxI	GGCC	1 cut(s)	301
ApeKI	GCWGC	2 cut(s)	342, 647
ApoI	RAATTY	3 cut(s)	484, 553, 965
ArsI	GACNNNNNNTTYG	2 cut(s)	356, 388
Asp700I	GAANNNNTTC	1 cut(s)	965
AspLEI	GCGC	1 cut(s)	588
AspS9I	GGNCC	2 cut(s)	301, 307
AsuHPI	GGTGA	5 cut(s)	45, 605, 685, 797, 929
AsuII	TTCGAA	1 cut(s)	262
AvaII	GGWCC	1 cut(s)	307
BanI	GGYRCC	1 cut(s)	509
BanII	GRGCYC	2 cut(s)	524, 698
BbsI	GAAGAC	1 cut(s)	271
Bbv12I	GWGCWC	1 cut(s)	698
BbvCI	CCTCAGC	1 cut(s)	419
BbvI	GCAGC	2 cut(s)	329, 634
BccI	CCATC	2 cut(s)	91, 590
BciT130I	CCWGG	3 cut(s)	29, 305, 972
BcoDI	GTCTC	2 cut(s)	594, 670
BfaI	CTAG	5 cut(s)	137, 246, 530, 567, 744
BfuAI	ACCTGC	1 cut(s)	717
BglII	AGATCT	1 cut(s)	939
BisI	GCNGC	2 cut(s)	343, 648
BlsI	GCNGC	2 cut(s)	344, 649
Bme1390I	CCNGG	3 cut(s)	29, 305, 972
Bme18I	GGWCC	1 cut(s)	307
BmgT120I	GGNCC	2 cut(s)	301, 307
BmiI	GGNNCC	1 cut(s)	511
BmrFI	CCNGG	3 cut(s)	29, 305, 972
BmrI	ACTGGG	1 cut(s)	539
BmsI	GCATC	3 cut(s)	25, 730, 740
BmuI	ACTGGG	1 cut(s)	539
BpiI	GAAGAC	1 cut(s)	271
BplI	GAGNNNNNCTC	2 cut(s)	911, 943
Bpu10I	CCTNAGC	1 cut(s)	419
Bpu14I	TTCGAA	1 cut(s)	262
BsaBI	GATNNNNATC	1 cut(s)	792
BsaJI	CCNNGG	1 cut(s)	970
Bsc4I	CCNNNNNNNGG	3 cut(s)	437, 942, 1028
Bse1I	ACTGG	2 cut(s)	222, 545
Bse3DI	GCAATG	1 cut(s)	595
Bse8I	GATNNNNATC	1 cut(s)	792
BseBI	CCWGG	3 cut(s)	29, 305, 972
BseDI	CCNNGG	1 cut(s)	970
BseGI	GGATG	1 cut(s)	745
BseJI	GATNNNNATC	1 cut(s)	792
BseLI	CCNNNNNNNGG	3 cut(s)	437, 942, 1028
BseMI	GCAATG	1 cut(s)	595
BseMII	CTCAG	3 cut(s)	9, 396, 410
BseNI	ACTGG	2 cut(s)	222, 545
BseXI	GCAGC	2 cut(s)	329, 634
BshFI	GGCC	1 cut(s)	303
BshNI	GGYRCC	1 cut(s)	509
BsiHKAI	GWGCWC	1 cut(s)	698
BslFI	GGGAC	1 cut(s)	778
BslI	CCNNNNNNNGG	3 cut(s)	437, 942, 1028
BsmAI	GTCTC	2 cut(s)	594, 670
BsmFI	GGGAC	1 cut(s)	778
BsnI	GGCC	1 cut(s)	303
Bsp119I	TTCGAA	1 cut(s)	262
Bsp1286I	GDGCHC	2 cut(s)	524, 698
Bsp143I	GATC	1 cut(s)	939
BspACI	CCGC	1 cut(s)	110
BspANI	GGCC	1 cut(s)	303
BspCNI	CTCAG	3 cut(s)	10, 397, 411
BspLI	GGNNCC	1 cut(s)	511
BspMI	ACCTGC	1 cut(s)	717
BspT104I	TTCGAA	1 cut(s)	262
BspT107I	GGYRCC	1 cut(s)	509
BsrDI	GCAATG	1 cut(s)	595
BsrI	ACTGG	2 cut(s)	222, 545
BssECI	CCNNGG	1 cut(s)	970
BssMI	GATC	1 cut(s)	939
Bst2UI	CCWGG	3 cut(s)	29, 305, 972
Bst4CI	ACNGT	2 cut(s)	380, 1012
BstBI	TTCGAA	1 cut(s)	262
BstDEI	CTNAG	6 cut(s)	18, 405, 419, 631, 840, 954
BstF5I	GGATG	1 cut(s)	745
BstHHI	GCGC	1 cut(s)	588
BstKTI	GATC	1 cut(s)	942
BstMAI	GTCTC	2 cut(s)	594, 670
BstMBI	GATC	1 cut(s)	939
BstMWI	GCNNNNNNNGC	2 cut(s)	415, 424
BstNI	CCWGG	3 cut(s)	29, 305, 972
BstNSI	RCATGY	1 cut(s)	495
BstSCI	CCNGG	3 cut(s)	27, 303, 970
BstV1I	GCAGC	2 cut(s)	329, 634
BstV2I	GAAGAC	1 cut(s)	271
BstX2I	RGATCY	1 cut(s)	939
BstYI	RGATCY	1 cut(s)	939
BsuRI	GGCC	1 cut(s)	303
BtsCI	GGATG	1 cut(s)	745
BtsIMutI	CAGTG	2 cut(s)	552, 831
BveI	ACCTGC	1 cut(s)	717
CfoI	GCGC	1 cut(s)	588
Cfr13I	GGNCC	2 cut(s)	301, 307
CviAII	CATG	4 cut(s)	443, 492, 815, 1038
DdeI	CTNAG	6 cut(s)	18, 405, 419, 631, 840, 954
DpnI	GATC	1 cut(s)	941
DpnII	GATC	1 cut(s)	939
DraI	TTTAAA	1 cut(s)	868
DrdI	GACNNNNNNGTC	1 cut(s)	314
DseDI	GACNNNNNNGTC	1 cut(s)	314
Ecl136II	GAGCTC	1 cut(s)	696
Eco24I	GRGCYC	2 cut(s)	524, 698
Eco47I	GGWCC	1 cut(s)	307
Eco53kI	GAGCTC	1 cut(s)	696
Eco57I	CTGAAG	1 cut(s)	72
EcoICRI	GAGCTC	1 cut(s)	696
EcoRII	CCWGG	3 cut(s)	27, 303, 970
EcoT22I	ATGCAT	1 cut(s)	448
EcoT38I	GRGCYC	2 cut(s)	524, 698
FaeI	CATG	4 cut(s)	446, 495, 818, 1041
FaqI	GGGAC	1 cut(s)	778
FatI	CATG	4 cut(s)	442, 491, 814, 1037
FauNDI	CATATG	1 cut(s)	453
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	2 cut(s)	343, 648
FokI	GGATG	1 cut(s)	752
FriOI	GRGCYC	2 cut(s)	524, 698
Fsp4HI	GCNGC	2 cut(s)	343, 648
FspBI	CTAG	5 cut(s)	137, 246, 530, 567, 744
GlaI	GCGC	1 cut(s)	587
GluI	GCNGC	2 cut(s)	343, 648
HaeIII	GGCC	1 cut(s)	303
HhaI	GCGC	1 cut(s)	588
Hin1II	CATG	4 cut(s)	446, 495, 818, 1041
Hin6I	GCGC	1 cut(s)	586
HinP1I	GCGC	1 cut(s)	586
HindIII	AAGCTT	1 cut(s)	842
HinfI	GANTC	6 cut(s)	106, 183, 323, 563, 627, 788
HphI	GGTGA	5 cut(s)	45, 605, 685, 797, 929
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	4 cut(s)	19, 364, 406, 624
Hpy188III	TCNNGA	3 cut(s)	252, 567, 691
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	2 cut(s)	701, 1011
HpyCH4III	ACNGT	2 cut(s)	380, 1012
HpyCH4V	TGCA	2 cut(s)	345, 446
HpyF10VI	GCNNNNNNNGC	2 cut(s)	415, 424
HpyF3I	CTNAG	6 cut(s)	18, 405, 419, 631, 840, 954
Hsp92II	CATG	4 cut(s)	446, 495, 818, 1041
HspAI	GCGC	1 cut(s)	586
Kzo9I	GATC	1 cut(s)	939
LmnI	GCTCC	3 cut(s)	82, 693, 701
Lsp1109I	GCAGC	2 cut(s)	329, 634
LweI	GCATC	3 cut(s)	25, 730, 740
MaeI	CTAG	5 cut(s)	137, 246, 530, 567, 744
MaeIII	GTNAC	1 cut(s)	1012
MalI	GATC	1 cut(s)	941
MboI	GATC	1 cut(s)	939
MflI	RGATCY	1 cut(s)	939
MhlI	GDGCHC	2 cut(s)	524, 698
MluCI	AATT	9 cut(s)	9, 40, 371, 433, 484, 553, 573, 733, 965
MlyI	GAGTC	3 cut(s)	115, 317, 636
MmeI	TCCRAC	1 cut(s)	602
MnlI	CCTC	9 cut(s)	189, 290, 414, 500, 507, 634, 654, 821, 880
Mph1103I	ATGCAT	1 cut(s)	448
MroXI	GAANNNNTTC	1 cut(s)	965
MseI	TTAA	2 cut(s)	614, 867
MslI	CAYNNNNRTG	2 cut(s)	819, 915
MspR9I	CCNGG	3 cut(s)	29, 305, 972
MvaI	CCWGG	3 cut(s)	29, 305, 972
MwoI	GCNNNNNNNGC	2 cut(s)	415, 424
NdeI	CATATG	1 cut(s)	453
NdeII	GATC	1 cut(s)	939
NlaIII	CATG	4 cut(s)	446, 495, 818, 1041
NlaIV	GGNNCC	1 cut(s)	511
NsiI	ATGCAT	1 cut(s)	448
NspI	RCATGY	1 cut(s)	495
NspV	TTCGAA	1 cut(s)	262
PaqCI	CACCTGC	1 cut(s)	717
PcsI	WCGNNNNNNNCGW	1 cut(s)	259
PdmI	GAANNNNTTC	1 cut(s)	965
PfeI	GAWTC	3 cut(s)	183, 563, 788
PflMI	CCANNNNNTGG	2 cut(s)	942, 1028
PkrI	GCNGC	2 cut(s)	344, 649
PleI	GAGTC	3 cut(s)	114, 317, 635
PpsI	GAGTC	3 cut(s)	114, 317, 635
Psp124BI	GAGCTC	1 cut(s)	698
Psp6I	CCWGG	3 cut(s)	27, 303, 970
PspGI	CCWGG	3 cut(s)	27, 303, 970
PspN4I	GGNNCC	1 cut(s)	511
PspPI	GGNCC	2 cut(s)	301, 307
PsuI	RGATCY	1 cut(s)	939
RseI	CAYNNNNRTG	2 cut(s)	819, 915
SacI	GAGCTC	1 cut(s)	698
SaqAI	TTAA	2 cut(s)	614, 867
SatI	GCNGC	2 cut(s)	343, 648
Sau3AI	GATC	1 cut(s)	939
Sau96I	GGNCC	2 cut(s)	301, 307
SchI	GAGTC	3 cut(s)	115, 317, 636
ScrFI	CCNGG	3 cut(s)	29, 305, 972
SduI	GDGCHC	2 cut(s)	524, 698
SfaNI	GCATC	3 cut(s)	25, 730, 740
SfuI	TTCGAA	1 cut(s)	262
SinI	GGWCC	1 cut(s)	307
SmiMI	CAYNNNNRTG	2 cut(s)	819, 915
Sse9I	AATT	9 cut(s)	9, 40, 371, 433, 484, 553, 573, 733, 965
SsiI	CCGC	1 cut(s)	110
SspMI	CTAG	5 cut(s)	137, 246, 530, 567, 744
SstI	GAGCTC	1 cut(s)	698
StyD4I	CCNGG	3 cut(s)	27, 303, 970
TaaI	ACNGT	2 cut(s)	380, 1012
TaqI	TCGA	3 cut(s)	253, 262, 465
TasI	AATT	9 cut(s)	9, 40, 371, 433, 484, 553, 573, 733, 965
TfiI	GAWTC	3 cut(s)	183, 563, 788
Tru1I	TTAA	2 cut(s)	614, 867
Tru9I	TTAA	2 cut(s)	614, 867
TscAI	CASTG	2 cut(s)	552, 838
TseI	GCWGC	2 cut(s)	342, 647
TspDTI	ATGAA	7 cut(s)	57, 83, 142, 158, 178, 440, 873
TspRI	CASTG	2 cut(s)	552, 838
Van91I	CCANNNNNTGG	2 cut(s)	942, 1028
VpaK11BI	GGWCC	1 cut(s)	307
XapI	RAATTY	3 cut(s)	484, 553, 965
XbaI	TCTAGA	1 cut(s)	566
XceI	RCATGY	1 cut(s)	495
XmiI	GTMKAC	1 cut(s)	5
XmnI	GAANNNNTTC	1 cut(s)	965
XspI	CTAG	5 cut(s)	137, 246, 530, 567, 744
Zsp2I	ATGCAT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.