Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0015622

Physical Location & Seq

Genomic Coordinates Reverse (-)

12133710 .. 12135829

Gene Structure 2120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG141400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGTCTACAATTCAATCTGAGCTCAACCAGGAAGATGCTAATTGGAGAAACTCACCACCCCCAACTTCATTTTCAGCTCCTCCATCTTCAGTTCATAGCAGTATGAGTCCGCTATTTCTTGTGGTTGTAGTAGTTCTAGCTGTTATCTTCTTCATTGGTGGTCTTGTTCATTTGGTTTTACGATTCTTCATAAAGAGGTCATCTTCCCCACTCTTTCAATCCAGTAATAGACACCCAGAAAGCTCTAGCTCTCGAAATCTTCGAAGACAGCTTCAACACCTCTTTCACTTACACGACTTGGGCCTGGACCAAGCTGTCATAGACTCTCTGCCTGTGTTCTGCTGCAAAGACATTGTTGGTTCAGATGAGCAATTTGACTGTGCTATCTGTCTGTGTGAGTTTTCTGAGCAGGACAAGCTGAGGTTGCTTCCTAATTGTGGTCATGCATTTCATATGGATTGTATTGACACTTGGCTTCTCTCAAATTCAACATGCCCTCTTTGTAGAGGCACCCTTTTGGGCTCTGGTCTAGTATTGGAAAACCCAGTGTTGAATTTTGATGATTCTAGAGCAATGTCAAGTAGGTTCAATGGTGATGGAGACAATGGGGGTTTAAGTGGTCGGAGGGTCTTAGCTTTGGAGGAAGCTGGCGTCGAAAAGAGGGTGTTTTCGGTGAGACTTGGGAAGTTCAGGAGCTCGACGAACGAAGGATTAGGAGAAACAAGCAGGTGTAATTTGGATGCTAGGAGATGCTACTCAATGGGGACATATCAGTATGTGGTTGGTGATTCAAATCTTCAAGTGGTCTTGTCGCATGATTGTGGTGGAGGCACTGATACTAAGCTTGACATTGATGATGAACACTTTAAAATTGGTGGGAATTTGGAGGGGAAGAAAATCAATGGGTGTCATAAAGGTGAGAGCTTCTCTGTGTCTAAGATCTGGCTTTGGTCTAAGAAGAACAAATTCCCAGGCTCTTTGAATACTCATACCGGTATGCCTTCTTTTACTGTAACTTCTCCGATCAATGGTGGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

346

Amino Acids

37.99

Weight (kDa)

6.45

Isoelectric Point (pI)

54.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-ANAPC11	PF12861	124 - 171	6.9e-06	Anaphase-promoting complex subunit 11 RING-H2 finger
zf-RING_2	PF13639	126 - 169	1.4e-15	Ring finger domain
zf-RING_11	PF17123	126 - 155	3.2e-10	RING-like zinc finger
zf-rbx1	PF12678	126 - 169	1.2e-09	RING-H2 zinc finger domain
zf-RING_5	PF14634	126 - 169	4.6e-06	zinc-RING finger domain
zf-C3HC4	PF00097	127 - 168	7.4e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	127 - 168	1.7e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015622)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05060
malus_domestica	MD00G1171600.v1.1 MD14G1184200.v1.1
prunus_persica	Prupe.5G176800_v2.0.a1
pyrus_communis	pycom06g15800 pycom14g15320
rosa_chinensis	RchiOBHm_Chr7g0193981
rosa_laevigata	RLG00000004226
rosa_multiflora	Rmu_sc0002389.1_g000005
rosa_roxburghii	Rroxscaffold_3G00261650
rosa_rugosa	Rorug07G0013000
rosa_samantha	Rh7AG140100 Rh7BG140500 Rh7CG144100 Rh7DG141400
rosa_wichuraiana	Rw7G011950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	717
AasI	GACNNNNNNGTC	1 cut(s)	314
Acc36I	ACCTGC	1 cut(s)	717
AccB1I	GGYRCC	1 cut(s)	509
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	1 cut(s)	110
AcsI	RAATTY	4 cut(s)	484, 553, 880, 965
AcuI	CTGAAG	1 cut(s)	72
AcyI	GRCGYC	1 cut(s)	651
AfiI	CCNNNNNNNGG	2 cut(s)	437, 1028
AgeI	ACCGGT	1 cut(s)	992
AgsI	TTSAA	9 cut(s)	14, 218, 275, 489, 553, 589, 792, 800, 982
AjnI	CCWGG	3 cut(s)	27, 303, 970
AjuI	GAANNNNNNNTTGG	2 cut(s)	55, 87
Alw21I	GWGCWC	2 cut(s)	24, 698
Alw26I	GTCTC	2 cut(s)	594, 670
AoxI	GGCC	1 cut(s)	301
ApeKI	GCWGC	1 cut(s)	342
ApoI	RAATTY	4 cut(s)	484, 553, 880, 965
AsiGI	ACCGGT	1 cut(s)	992
Asp700I	GAANNNNTTC	1 cut(s)	965
AspS9I	GGNCC	2 cut(s)	301, 307
AsuHPI	GGTGA	5 cut(s)	45, 605, 685, 797, 929
AsuII	TTCGAA	1 cut(s)	262
AvaII	GGWCC	1 cut(s)	307
BanI	GGYRCC	1 cut(s)	509
BanII	GRGCYC	3 cut(s)	24, 524, 698
BbsI	GAAGAC	1 cut(s)	271
Bbv12I	GWGCWC	2 cut(s)	24, 698
BbvCI	CCTCAGC	1 cut(s)	419
BbvI	GCAGC	1 cut(s)	329
BccI	CCATC	2 cut(s)	91, 590
BciT130I	CCWGG	3 cut(s)	29, 305, 972
BcoDI	GTCTC	2 cut(s)	594, 670
BfaI	CTAG	5 cut(s)	137, 246, 530, 567, 744
BfuAI	ACCTGC	1 cut(s)	717
BglII	AGATCT	1 cut(s)	939
BisI	GCNGC	1 cut(s)	343
BlsI	GCNGC	1 cut(s)	344
Bme1390I	CCNGG	3 cut(s)	29, 305, 972
Bme18I	GGWCC	1 cut(s)	307
BmgT120I	GGNCC	2 cut(s)	301, 307
BmiI	GGNNCC	1 cut(s)	511
BmrFI	CCNGG	3 cut(s)	29, 305, 972
BmrI	ACTGGG	1 cut(s)	539
BmsI	GCATC	3 cut(s)	25, 730, 740
BmuI	ACTGGG	1 cut(s)	539
BpiI	GAAGAC	1 cut(s)	271
BplI	GAGNNNNNCTC	2 cut(s)	911, 943
Bpu10I	CCTNAGC	1 cut(s)	419
Bpu14I	TTCGAA	1 cut(s)	262
BsaBI	GATNNNNATC	1 cut(s)	792
BsaHI	GRCGYC	1 cut(s)	651
BsaJI	CCNNGG	1 cut(s)	970
BsaWI	WCCGGW	1 cut(s)	992
Bsc4I	CCNNNNNNNGG	2 cut(s)	437, 1028
Bse118I	RCCGGY	1 cut(s)	992
Bse1I	ACTGG	2 cut(s)	222, 545
Bse3DI	GCAATG	1 cut(s)	579
Bse8I	GATNNNNATC	1 cut(s)	792
BseBI	CCWGG	3 cut(s)	29, 305, 972
BseDI	CCNNGG	1 cut(s)	970
BseGI	GGATG	1 cut(s)	745
BseJI	GATNNNNATC	1 cut(s)	792
BseLI	CCNNNNNNNGG	2 cut(s)	437, 1028
BseMI	GCAATG	1 cut(s)	579
BseMII	CTCAG	3 cut(s)	9, 396, 410
BseNI	ACTGG	2 cut(s)	222, 545
BseRI	GAGGAG	1 cut(s)	69
BseXI	GCAGC	1 cut(s)	329
BshFI	GGCC	1 cut(s)	303
BshNI	GGYRCC	1 cut(s)	509
BshTI	ACCGGT	1 cut(s)	992
BsiHKAI	GWGCWC	2 cut(s)	24, 698
BsiSI	CCGG	1 cut(s)	993
BslFI	GGGAC	1 cut(s)	778
BslI	CCNNNNNNNGG	2 cut(s)	437, 1028
BsmAI	GTCTC	2 cut(s)	594, 670
BsmFI	GGGAC	1 cut(s)	778
BsnI	GGCC	1 cut(s)	303
Bsp119I	TTCGAA	1 cut(s)	262
Bsp1286I	GDGCHC	3 cut(s)	24, 524, 698
Bsp143I	GATC	2 cut(s)	939, 1023
BspACI	CCGC	1 cut(s)	110
BspANI	GGCC	1 cut(s)	303
BspCNI	CTCAG	3 cut(s)	10, 397, 411
BspLI	GGNNCC	1 cut(s)	511
BspMI	ACCTGC	1 cut(s)	717
BspT104I	TTCGAA	1 cut(s)	262
BspT107I	GGYRCC	1 cut(s)	509
BsrDI	GCAATG	1 cut(s)	579
BsrFI	RCCGGY	1 cut(s)	992
BsrI	ACTGG	2 cut(s)	222, 545
BssAI	RCCGGY	1 cut(s)	992
BssECI	CCNNGG	1 cut(s)	970
BssMI	GATC	2 cut(s)	939, 1023
BssNI	GRCGYC	1 cut(s)	651
Bst2UI	CCWGG	3 cut(s)	29, 305, 972
Bst4CI	ACNGT	2 cut(s)	380, 1012
BstACI	GRCGYC	1 cut(s)	651
BstBI	TTCGAA	1 cut(s)	262
BstC8I	GCNNGC	1 cut(s)	649
BstDEI	CTNAG	7 cut(s)	18, 405, 419, 631, 840, 936, 954
BstF5I	GGATG	1 cut(s)	745
BstKTI	GATC	2 cut(s)	942, 1026
BstMAI	GTCTC	2 cut(s)	594, 670
BstMBI	GATC	2 cut(s)	939, 1023
BstMWI	GCNNNNNNNGC	2 cut(s)	415, 424
BstNI	CCWGG	3 cut(s)	29, 305, 972
BstNSI	RCATGY	1 cut(s)	495
BstSCI	CCNGG	3 cut(s)	27, 303, 970
BstV1I	GCAGC	1 cut(s)	329
BstV2I	GAAGAC	1 cut(s)	271
BstX2I	RGATCY	1 cut(s)	939
BstYI	RGATCY	1 cut(s)	939
BsuRI	GGCC	1 cut(s)	303
BtsCI	GGATG	1 cut(s)	745
BtsIMutI	CAGTG	2 cut(s)	552, 831
BveI	ACCTGC	1 cut(s)	717
Cac8I	GCNNGC	1 cut(s)	649
Cfr10I	RCCGGY	1 cut(s)	992
Cfr13I	GGNCC	2 cut(s)	301, 307
CseI	GACGC	1 cut(s)	640
CspAI	ACCGGT	1 cut(s)	992
CviAII	CATG	4 cut(s)	443, 492, 815, 1038
DdeI	CTNAG	7 cut(s)	18, 405, 419, 631, 840, 936, 954
DpnI	GATC	2 cut(s)	941, 1025
DpnII	GATC	2 cut(s)	939, 1023
DraI	TTTAAA	1 cut(s)	868
DrdI	GACNNNNNNGTC	1 cut(s)	314
DseDI	GACNNNNNNGTC	1 cut(s)	314
Ecl136II	GAGCTC	2 cut(s)	22, 696
Eco24I	GRGCYC	3 cut(s)	24, 524, 698
Eco47I	GGWCC	1 cut(s)	307
Eco53kI	GAGCTC	2 cut(s)	22, 696
Eco57I	CTGAAG	1 cut(s)	72
EcoICRI	GAGCTC	2 cut(s)	22, 696
EcoRII	CCWGG	3 cut(s)	27, 303, 970
EcoT22I	ATGCAT	1 cut(s)	448
EcoT38I	GRGCYC	3 cut(s)	24, 524, 698
FaeI	CATG	4 cut(s)	446, 495, 818, 1041
FaqI	GGGAC	1 cut(s)	778
FatI	CATG	4 cut(s)	442, 491, 814, 1037
FauNDI	CATATG	1 cut(s)	453
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	1 cut(s)	343
FokI	GGATG	1 cut(s)	752
FriOI	GRGCYC	3 cut(s)	24, 524, 698
Fsp4HI	GCNGC	1 cut(s)	343
FspBI	CTAG	5 cut(s)	137, 246, 530, 567, 744
GluI	GCNGC	1 cut(s)	343
HaeIII	GGCC	1 cut(s)	303
HapII	CCGG	1 cut(s)	993
HgaI	GACGC	1 cut(s)	640
Hin1I	GRCGYC	1 cut(s)	651
Hin1II	CATG	4 cut(s)	446, 495, 818, 1041
HindIII	AAGCTT	1 cut(s)	842
HinfI	GANTC	5 cut(s)	106, 183, 323, 563, 788
HpaII	CCGG	1 cut(s)	993
HphI	GGTGA	5 cut(s)	45, 605, 685, 797, 929
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	5 cut(s)	19, 364, 406, 624, 1023
Hpy188III	TCNNGA	3 cut(s)	252, 567, 691
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	2 cut(s)	656, 703
HpyAV	CCTTC	2 cut(s)	701, 1011
HpyCH4III	ACNGT	2 cut(s)	380, 1012
HpyCH4V	TGCA	2 cut(s)	345, 446
HpyF10VI	GCNNNNNNNGC	2 cut(s)	415, 424
HpyF3I	CTNAG	7 cut(s)	18, 405, 419, 631, 840, 936, 954
Hsp92I	GRCGYC	1 cut(s)	651
Hsp92II	CATG	4 cut(s)	446, 495, 818, 1041
Kzo9I	GATC	2 cut(s)	939, 1023
LmnI	GCTCC	2 cut(s)	82, 693
Lsp1109I	GCAGC	1 cut(s)	329
LweI	GCATC	3 cut(s)	25, 730, 740
MaeI	CTAG	5 cut(s)	137, 246, 530, 567, 744
MaeIII	GTNAC	1 cut(s)	1012
MalI	GATC	2 cut(s)	941, 1025
MboI	GATC	2 cut(s)	939, 1023
MflI	RGATCY	1 cut(s)	939
MhlI	GDGCHC	3 cut(s)	24, 524, 698
MlyI	GAGTC	2 cut(s)	115, 317
MmeI	TCCRAC	1 cut(s)	602
Mph1103I	ATGCAT	1 cut(s)	448
MroXI	GAANNNNTTC	1 cut(s)	965
MseI	TTAA	2 cut(s)	614, 867
MslI	CAYNNNNRTG	2 cut(s)	819, 915
MspI	CCGG	1 cut(s)	993
MspR9I	CCNGG	3 cut(s)	29, 305, 972
MvaI	CCWGG	3 cut(s)	29, 305, 972
MwoI	GCNNNNNNNGC	2 cut(s)	415, 424
NdeI	CATATG	1 cut(s)	453
NdeII	GATC	2 cut(s)	939, 1023
NlaIII	CATG	4 cut(s)	446, 495, 818, 1041
NlaIV	GGNNCC	1 cut(s)	511
NsiI	ATGCAT	1 cut(s)	448
NspI	RCATGY	1 cut(s)	495
NspV	TTCGAA	1 cut(s)	262
PaqCI	CACCTGC	1 cut(s)	717
PcsI	WCGNNNNNNNCGW	1 cut(s)	259
PdmI	GAANNNNTTC	1 cut(s)	965
PfeI	GAWTC	3 cut(s)	183, 563, 788
PinAI	ACCGGT	1 cut(s)	992
PkrI	GCNGC	1 cut(s)	344
PleI	GAGTC	2 cut(s)	114, 317
PpsI	GAGTC	2 cut(s)	114, 317
Psp124BI	GAGCTC	2 cut(s)	24, 698
Psp6I	CCWGG	3 cut(s)	27, 303, 970
PspGI	CCWGG	3 cut(s)	27, 303, 970
PspN4I	GGNNCC	1 cut(s)	511
PspPI	GGNCC	2 cut(s)	301, 307
PsuI	RGATCY	1 cut(s)	939
RseI	CAYNNNNRTG	2 cut(s)	819, 915
SacI	GAGCTC	2 cut(s)	24, 698
SaqAI	TTAA	2 cut(s)	614, 867
SatI	GCNGC	1 cut(s)	343
Sau3AI	GATC	2 cut(s)	939, 1023
Sau96I	GGNCC	2 cut(s)	301, 307
SchI	GAGTC	2 cut(s)	115, 317
ScrFI	CCNGG	3 cut(s)	29, 305, 972
SduI	GDGCHC	3 cut(s)	24, 524, 698
SfaNI	GCATC	3 cut(s)	25, 730, 740
SfuI	TTCGAA	1 cut(s)	262
SinI	GGWCC	1 cut(s)	307
SmiMI	CAYNNNNRTG	2 cut(s)	819, 915
SsiI	CCGC	1 cut(s)	110
SspMI	CTAG	5 cut(s)	137, 246, 530, 567, 744
SstI	GAGCTC	2 cut(s)	24, 698
StyD4I	CCNGG	3 cut(s)	27, 303, 970
TaaI	ACNGT	2 cut(s)	380, 1012
TaqI	TCGA	4 cut(s)	253, 262, 654, 698
TfiI	GAWTC	3 cut(s)	183, 563, 788
Tru1I	TTAA	2 cut(s)	614, 867
Tru9I	TTAA	2 cut(s)	614, 867
TscAI	CASTG	2 cut(s)	552, 838
TseI	GCWGC	1 cut(s)	342
TspDTI	ATGAA	7 cut(s)	57, 83, 142, 158, 178, 440, 873
TspRI	CASTG	2 cut(s)	552, 838
VpaK11BI	GGWCC	1 cut(s)	307
XapI	RAATTY	4 cut(s)	484, 553, 880, 965
XbaI	TCTAGA	1 cut(s)	566
XceI	RCATGY	1 cut(s)	495
XmiI	GTMKAC	1 cut(s)	5
XmnI	GAANNNNTTC	1 cut(s)	965
XspI	CTAG	5 cut(s)	137, 246, 530, 567, 744
Zsp2I	ATGCAT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.