Rorug07G0013000
NAC Family

inactive receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0015622
Physical Location & Seq
Reverse (-)
1021504 .. 1024087
2584 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0013000.1

Sequence Viewer

Length: 954 bp
ATGTCGATTGAGCTCAAGCTTTCCCGGATTAATCGAGTTTATCGTCCTTGTGAACTGGTTGAGGGCAAGATCATAGTGAAGTCTTCGTCTTCAATCTCGCACTATGGAATTCGCATCGCGGTTGATGGATCTGTCAGCTTGCAGGTTCGGGGAGGGACGGCCGGAGTTATAGAGACTTTGGTTGGTGCTGCCAAGCCTATTTCGATTCTGAACAAAATTGTTGACCTTAGACCTGCTGGAAAGATTGCTTCAGGCATAACCGAGATACCGTTTTCCATGCATATCAGGCAACCAAGAGAAGATAACCTCGAAAAGTTCTATGAGACGTTCCATGGAGGAAATATTAACATTCAGTATTTAGTGACTGTAGATATATCGAGAGGATACCTGTATAAGTCGTTATCTACAACAATGGAGTTCATAGTTGAAAGTGATAAAGCTGATGTAATTGAGCGACCAGTTTCTCCGGAGATGGTTGTCTTTTACATTACTCAGGATACCCAAAGACATCCGCTACTTCCTCAACTGAAATCAGGTGGATTTCGAATCATTGGAAAAATGGCCACTCAATGTTCTTTATCGGATCCTGTTAGTGGTGAACTAACAGTAGAAGCATCTGCAGTTCCAATTTCTTCCATTGATATACACTTGCTTCGTGTAGAGTCAATCCTTCTAGGGGAGAAAATTGTGACTGAGAAGTCTGTGGTTCAGACTACACAGATAGCAGATGGAGACGTCTGTCATAATATGACTCTGCCCATTCATGTTATACTTCCCCGTCTTTTGACATGTCCTACAGTCTCAGCAGGGCCATTCTCGATTGAATTTAAAGTTGTCATAGTCATAACATTTCAGTCAGAGGTAGCCAAATTGCATTCAAAATCTGATCCTACAACTCCCAGACTATGGCTTGCAATGGAGACTCTACCGCTTGAACTTGTTAGAACAAGGTAA

Protein Analysis

317

Amino Acids

34.93

Weight (kDa)

7.09

Isoelectric Point (pI)

44.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Vps26 PF03643 11 - 283 2.4e-28 Vacuolar protein sorting-associated protein 26
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015622)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g05060
malus_domestica MD00G1171600.v1.1 MD14G1184200.v1.1
prunus_persica Prupe.5G176800_v2.0.a1
pyrus_communis pycom06g15800 pycom14g15320
rosa_chinensis RchiOBHm_Chr7g0193981
rosa_laevigata RLG00000004226
rosa_multiflora Rmu_sc0002389.1_g000005
rosa_roxburghii Rroxscaffold_3G00261650
rosa_rugosa Rorug07G0013000
rosa_samantha Rh7AG140100 Rh7BG140500 Rh7CG144100 Rh7DG141400
rosa_wichuraiana Rw7G011950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 697
AatII GACGTC 1 cut(s) 738
Acc36I ACCTGC 2 cut(s) 133, 241
AccB7I CCANNNNNTGG 1 cut(s) 906
AccII CGCG 1 cut(s) 119
AccIII TCCGGA 1 cut(s) 466
AciI CCGC 3 cut(s) 119, 512, 929
AclWI GGATC 4 cut(s) 136, 578, 591, 881
AcoI YGGCCR 2 cut(s) 159, 561
AcsI RAATTY 2 cut(s) 108, 824
AcuI CTGAAG 1 cut(s) 234
AcyI GRCGYC 1 cut(s) 735
AfiI CCNNNNNNNGG 3 cut(s) 593, 676, 906
AflIII ACRYGT 1 cut(s) 788
AgsI TTSAA 5 cut(s) 93, 428, 824, 879, 935
AluBI AGCT 4 cut(s) 13, 19, 138, 440
AluI AGCT 4 cut(s) 13, 19, 138, 440
Alw21I GWGCWC 1 cut(s) 15
Alw26I GTCTC 5 cut(s) 167, 317, 726, 805, 914
AlwI GGATC 4 cut(s) 136, 578, 591, 881
Aor13HI TCCGGA 1 cut(s) 466
AoxI GGCC 3 cut(s) 159, 561, 809
ApeKI GCWGC 1 cut(s) 188
ApoI RAATTY 2 cut(s) 108, 824
AseI ATTAAT 1 cut(s) 30
AspS9I GGNCC 1 cut(s) 809
AsuC2I CCSGG 1 cut(s) 25
AsuHPI GGTGA 1 cut(s) 608
AsuII TTCGAA 1 cut(s) 544
BalI TGGCCA 1 cut(s) 563
BamHI GGATCC 1 cut(s) 583
BanII GRGCYC 1 cut(s) 15
BbsI GAAGAC 2 cut(s) 75, 81
Bbv12I GWGCWC 1 cut(s) 15
BbvI GCAGC 1 cut(s) 175
BccI CCATC 3 cut(s) 119, 466, 722
BceAI ACGGC 1 cut(s) 174
BciVI GTATCC 2 cut(s) 377, 490
BcnI CCSGG 1 cut(s) 25
BcoDI GTCTC 5 cut(s) 167, 317, 726, 805, 914
BfaI CTAG 1 cut(s) 674
BfmI CTRYAG 3 cut(s) 366, 618, 795
BfuAI ACCTGC 2 cut(s) 133, 241
BfuI GTATCC 2 cut(s) 377, 490
BisI GCNGC 1 cut(s) 189
BlsI GCNGC 1 cut(s) 190
Bme1390I CCNGG 1 cut(s) 25
BmgT120I GGNCC 1 cut(s) 809
BmiI GGNNCC 1 cut(s) 585
BmrFI CCNGG 1 cut(s) 25
BmsI GCATC 2 cut(s) 123, 623
BoxI GACNNNNGTC 1 cut(s) 738
BpiI GAAGAC 2 cut(s) 75, 81
Bpu14I TTCGAA 1 cut(s) 544
BpuMI CCSGG 1 cut(s) 25
BsaHI GRCGYC 1 cut(s) 735
BsaJI CCNNGG 1 cut(s) 331
BsaWI WCCGGW 1 cut(s) 466
Bsc4I CCNNNNNNNGG 3 cut(s) 593, 676, 906
Bse1I ACTGG 2 cut(s) 60, 458
Bse3DI GCAATG 1 cut(s) 921
BseAI TCCGGA 1 cut(s) 466
BseDI CCNNGG 1 cut(s) 331
BseGI GGATG 1 cut(s) 508
BseLI CCNNNNNNNGG 3 cut(s) 593, 676, 906
BseMI GCAATG 1 cut(s) 921
BseMII CTCAG 3 cut(s) 506, 684, 816
BseNI ACTGG 2 cut(s) 60, 458
BseX3I CGGCCG 1 cut(s) 159
BseXI GCAGC 1 cut(s) 175
Bsh1236I CGCG 1 cut(s) 119
Bsh1285I CGRYCG 1 cut(s) 162
BshFI GGCC 3 cut(s) 161, 563, 811
BsiEI CGRYCG 1 cut(s) 162
BsiHKAI GWGCWC 1 cut(s) 15
BsiSI CCGG 3 cut(s) 25, 162, 467
BslFI GGGAC 1 cut(s) 169
BslI CCNNNNNNNGG 3 cut(s) 593, 676, 906
BsmAI GTCTC 5 cut(s) 167, 317, 726, 805, 914
BsmBI CGTCTC 2 cut(s) 317, 726
BsmFI GGGAC 1 cut(s) 169
BsmI GAATGC 1 cut(s) 874
BsnI GGCC 3 cut(s) 161, 563, 811
Bsp119I TTCGAA 1 cut(s) 544
Bsp1286I GDGCHC 1 cut(s) 15
Bsp13I TCCGGA 1 cut(s) 466
Bsp143I GATC 4 cut(s) 69, 128, 583, 886
Bsp19I CCATGG 1 cut(s) 331
BspACI CCGC 3 cut(s) 119, 512, 929
BspANI GGCC 3 cut(s) 161, 563, 811
BspCNI CTCAG 3 cut(s) 505, 685, 815
BspEI TCCGGA 1 cut(s) 466
BspFNI CGCG 1 cut(s) 119
BspLI GGNNCC 1 cut(s) 585
BspMAI CTGCAG 1 cut(s) 622
BspMI ACCTGC 2 cut(s) 133, 241
BspPI GGATC 4 cut(s) 136, 578, 591, 881
BspT104I TTCGAA 1 cut(s) 544
BsrDI GCAATG 1 cut(s) 921
BsrI ACTGG 2 cut(s) 60, 458
BssECI CCNNGG 1 cut(s) 331
BssMI GATC 4 cut(s) 69, 128, 583, 886
BssNI GRCGYC 1 cut(s) 735
BssT1I CCWWGG 1 cut(s) 331
Bst4CI ACNGT 4 cut(s) 270, 367, 607, 799
BstACI GRCGYC 1 cut(s) 735
BstBI TTCGAA 1 cut(s) 544
BstC8I GCNNGC 2 cut(s) 140, 912
BstDEI CTNAG 4 cut(s) 227, 492, 693, 802
BstDSI CCRYGG 1 cut(s) 331
BstF5I GGATG 1 cut(s) 508
BstFNI CGCG 1 cut(s) 119
BstKTI GATC 4 cut(s) 72, 131, 586, 889
BstMAI GTCTC 5 cut(s) 167, 317, 726, 805, 914
BstMBI GATC 4 cut(s) 69, 128, 583, 886
BstMCI CGRYCG 1 cut(s) 162
BstMWI GCNNNNNNNGC 1 cut(s) 286
BstNSI RCATGY 1 cut(s) 792
BstPAI GACNNNNGTC 1 cut(s) 738
BstSCI CCNGG 1 cut(s) 23
BstSFI CTRYAG 3 cut(s) 366, 618, 795
BstUI CGCG 1 cut(s) 119
BstV1I GCAGC 1 cut(s) 175
BstV2I GAAGAC 2 cut(s) 75, 81
BstX2I RGATCY 2 cut(s) 128, 583
BstYI RGATCY 2 cut(s) 128, 583
BstZI CGGCCG 1 cut(s) 159
BsuI GTATCC 2 cut(s) 377, 490
BsuRI GGCC 3 cut(s) 161, 563, 811
BtgI CCRYGG 1 cut(s) 331
BtgZI GCGATG 1 cut(s) 100
BtsCI GGATG 1 cut(s) 508
BveI ACCTGC 2 cut(s) 133, 241
Cac8I GCNNGC 2 cut(s) 140, 912
Cfr13I GGNCC 1 cut(s) 809
CviAII CATG 4 cut(s) 277, 332, 764, 789
DdeI CTNAG 4 cut(s) 227, 492, 693, 802
DpnI GATC 4 cut(s) 71, 130, 585, 888
DpnII GATC 4 cut(s) 69, 128, 583, 886
DraI TTTAAA 1 cut(s) 829
DrdI GACNNNNNNGTC 1 cut(s) 697
DseDI GACNNNNNNGTC 1 cut(s) 697
EaeI YGGCCR 2 cut(s) 159, 561
EagI CGGCCG 1 cut(s) 159
Ecl136II GAGCTC 1 cut(s) 13
EclXI CGGCCG 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 331
Eco24I GRGCYC 1 cut(s) 15
Eco52I CGGCCG 1 cut(s) 159
Eco53kI GAGCTC 1 cut(s) 13
Eco57I CTGAAG 1 cut(s) 234
EcoICRI GAGCTC 1 cut(s) 13
EcoRI GAATTC 1 cut(s) 108
EcoT14I CCWWGG 1 cut(s) 331
EcoT22I ATGCAT 1 cut(s) 282
EcoT38I GRGCYC 1 cut(s) 15
ErhI CCWWGG 1 cut(s) 331
Esp3I CGTCTC 2 cut(s) 317, 726
FaeI CATG 4 cut(s) 280, 335, 767, 792
FaqI GGGAC 1 cut(s) 169
FatI CATG 4 cut(s) 276, 331, 763, 788
Fnu4HI GCNGC 1 cut(s) 189
FokI GGATG 1 cut(s) 495
FriOI GRGCYC 1 cut(s) 15
Fsp4HI GCNGC 1 cut(s) 189
FspBI CTAG 1 cut(s) 674
GluI GCNGC 1 cut(s) 189
HaeIII GGCC 3 cut(s) 161, 563, 811
HapII CCGG 3 cut(s) 25, 162, 467
Hin1I GRCGYC 1 cut(s) 735
Hin1II CATG 4 cut(s) 280, 335, 767, 792
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 5 cut(s) 205, 546, 662, 751, 922
HpaII CCGG 3 cut(s) 25, 162, 467
HphI GGTGA 1 cut(s) 608
Hpy166II GTNNAC 3 cut(s) 53, 223, 599
Hpy188I TCNGA 5 cut(s) 210, 583, 711, 859, 886
Hpy188III TCNNGA 4 cut(s) 378, 467, 494, 817
Hpy8I GTNNAC 3 cut(s) 53, 223, 599
HpyAV CCTTC 1 cut(s) 680
HpyCH4III ACNGT 4 cut(s) 270, 367, 607, 799
HpyCH4IV ACGT 2 cut(s) 326, 735
HpyCH4V TGCA 5 cut(s) 142, 280, 620, 874, 914
HpyF10VI GCNNNNNNNGC 1 cut(s) 286
HpyF3I CTNAG 4 cut(s) 227, 492, 693, 802
HpySE526I ACGT 2 cut(s) 326, 735
Hsp92I GRCGYC 1 cut(s) 735
Hsp92II CATG 4 cut(s) 280, 335, 767, 792
Kpn2I TCCGGA 1 cut(s) 466
Kzo9I GATC 4 cut(s) 69, 128, 583, 886
Lsp1109I GCAGC 1 cut(s) 175
LweI GCATC 2 cut(s) 123, 623
MaeI CTAG 1 cut(s) 674
MaeII ACGT 2 cut(s) 326, 735
MaeIII GTNAC 2 cut(s) 361, 688
MalI GATC 4 cut(s) 71, 130, 585, 888
MboI GATC 4 cut(s) 69, 128, 583, 886
MboII GAAGA 4 cut(s) 75, 81, 311, 624
MflI RGATCY 2 cut(s) 128, 583
MhlI GDGCHC 1 cut(s) 15
MlsI TGGCCA 1 cut(s) 563
MluCI AATT 7 cut(s) 108, 216, 447, 627, 684, 824, 869
MluNI TGGCCA 1 cut(s) 563
MlyI GAGTC 3 cut(s) 671, 745, 916
MnlI CCTC 7 cut(s) 55, 146, 317, 329, 374, 531, 853
Mox20I TGGCCA 1 cut(s) 563
Mph1103I ATGCAT 1 cut(s) 282
MroI TCCGGA 1 cut(s) 466
MscI TGGCCA 1 cut(s) 563
MseI TTAA 3 cut(s) 30, 345, 828
Msp20I TGGCCA 1 cut(s) 563
MspI CCGG 3 cut(s) 25, 162, 467
MspR9I CCNGG 1 cut(s) 25
Mva1269I GAATGC 1 cut(s) 874
MvnI CGCG 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 286
NciI CCSGG 1 cut(s) 25
NcoI CCATGG 1 cut(s) 331
NdeII GATC 4 cut(s) 69, 128, 583, 886
NlaIII CATG 4 cut(s) 280, 335, 767, 792
NlaIV GGNNCC 1 cut(s) 585
NmuCI GTSAC 2 cut(s) 361, 688
NsiI ATGCAT 1 cut(s) 282
NspI RCATGY 1 cut(s) 792
NspV TTCGAA 1 cut(s) 544
PciI ACATGT 1 cut(s) 788
PcsI WCGNNNNNNNCGW 1 cut(s) 40
PctI GAATGC 1 cut(s) 874
PfeI GAWTC 2 cut(s) 205, 546
PflMI CCANNNNNTGG 1 cut(s) 906
PfoI TCCNGGA 1 cut(s) 23
PkrI GCNGC 1 cut(s) 190
PleI GAGTC 3 cut(s) 670, 745, 916
PpsI GAGTC 3 cut(s) 670, 745, 916
PscI ACATGT 1 cut(s) 788
PshAI GACNNNNGTC 1 cut(s) 738
PshBI ATTAAT 1 cut(s) 30
Psp124BI GAGCTC 1 cut(s) 15
PspN4I GGNNCC 1 cut(s) 585
PspPI GGNCC 1 cut(s) 809
PstI CTGCAG 1 cut(s) 622
PsuI RGATCY 2 cut(s) 128, 583
SacI GAGCTC 1 cut(s) 15
SaqAI TTAA 3 cut(s) 30, 345, 828
SatI GCNGC 1 cut(s) 189
Sau3AI GATC 4 cut(s) 69, 128, 583, 886
Sau96I GGNCC 1 cut(s) 809
SchI GAGTC 3 cut(s) 671, 745, 916
ScrFI CCNGG 1 cut(s) 25
SduI GDGCHC 1 cut(s) 15
SfaNI GCATC 2 cut(s) 123, 623
SfcI CTRYAG 3 cut(s) 366, 618, 795
SfuI TTCGAA 1 cut(s) 544
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
Sse9I AATT 7 cut(s) 108, 216, 447, 627, 684, 824, 869
SsiI CCGC 3 cut(s) 119, 512, 929
SspI AATATT 1 cut(s) 343
SspMI CTAG 1 cut(s) 674
SstI GAGCTC 1 cut(s) 15
StyD4I CCNGG 1 cut(s) 23
StyI CCWWGG 1 cut(s) 331
TaaI ACNGT 4 cut(s) 270, 367, 607, 799
TaiI ACGT 2 cut(s) 329, 738
TaqI TCGA 7 cut(s) 5, 34, 203, 309, 377, 544, 818
TasI AATT 7 cut(s) 108, 216, 447, 627, 684, 824, 869
TfiI GAWTC 2 cut(s) 205, 546
Tru1I TTAA 3 cut(s) 30, 345, 828
Tru9I TTAA 3 cut(s) 30, 345, 828
TseFI GTSAC 2 cut(s) 361, 688
TseI GCWGC 1 cut(s) 188
Tsp45I GTSAC 2 cut(s) 361, 688
TspDTI ATGAA 2 cut(s) 409, 752
Van91I CCANNNNNTGG 1 cut(s) 906
VspI ATTAAT 1 cut(s) 30
XapI RAATTY 2 cut(s) 108, 824
XceI RCATGY 1 cut(s) 792
XspI CTAG 1 cut(s) 674
ZraI GACGTC 1 cut(s) 736
Zsp2I ATGCAT 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.