Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0015622

Physical Location & Seq

Genomic Coordinates Reverse (-)

14974290 .. 14975613

Gene Structure 1324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G176800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGTCTAGAATTCTCTGTGGGTTGAACCAGAAAGATGGTAATTTGGTATACCCACCACCTTCCTCATTTTCAGTTCCTTCTGTTAGCGTTAACAATGGACAGGAATTGTCCCCTTCTTCATCATCATCATCATCATCATCATCATCATCATCTCTTAGCAATATCAGCCCAGTACTTCTTTTGGTTATAGTAATTCTAGCTGTTATCTTTTTCATCTCTGGCCTTGTTCATTTGCTTGTAAGATTTCTCATAAAGAGGTCATCTTCCTCAATCTTTCAATCCAATAGATACCCAGAAACCTCTGGGTCTCGTGCTATTCAAAGGCAGCTTCAACAGCTCTTTCGGTTACATGACGCGGGCCTAGATCAAACTGCCATAGATTCTCTACCTGTGTTCTACTGCAAAGACATTATTGGTTCAAAAGAGCCATTTGATTGTGCTGTTTGTCTCTGTGAATTTTCTGACCAGGACAAGCTGAGATTGCTCCCTAATTGTGGTCATGCTTTTCACATTGATTGTATTGACACTTGGCTCCTCTCAAATTCAACATGCCCCCTTTGTAGAGGGACCCTTTTGAGCTCTGGGTTTTTCTTGGAAAATCCAGTGTTCAATTTTGATGATGCTAGGGAAATGTCAAATAGGTTCGTTAGTGAGGGAGAGAACATGTGTTCAAGTGGTCAGAAACATTTGACTATGGAGGAAGCTGCTGGGGAAAAGAGGGTCTTTTCTGTAAGACTTGGAAAGTTCAGAAGCTTAAATGAAGGAGTAGAAAGTGGAGGGAGAGTGGGAGAAACCAGTAGCTGTAATTTGGATGCTAGGAGATGTTACTCAATGGGTACATATCAATATGTGGTTGGTGACTCAAATCTGCAAGTGGCCTTGTCCCATGATTGTAGTGGAGATAGTGATGCCAAGCTTGTCAAAGAGGGAGTTCATAATGGGAACTTCACAGTTAATGGGAATCTGGAGGGGAAGAAAATCAGTGGCCGGCATAAGGGTGAGAGCTTCTCTGTTTCAAAGATCTGGCTTTGGTCCTCGAAAAACCGATTCCCAGGTTCTTCGAATGCTCATACTGGTGTACCTCCTTTTAGATTAAGTTCTCCAATCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

371

Amino Acids

40.42

Weight (kDa)

7.93

Isoelectric Point (pI)

54.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015622)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05060
malus_domestica	MD00G1171600.v1.1 MD14G1184200.v1.1
prunus_persica	Prupe.5G176800_v2.0.a1
pyrus_communis	pycom06g15800 pycom14g15320
rosa_chinensis	RchiOBHm_Chr7g0193981
rosa_laevigata	RLG00000004226
rosa_multiflora	Rmu_sc0002389.1_g000005
rosa_roxburghii	Rroxscaffold_3G00261650
rosa_rugosa	Rorug07G0013000
rosa_samantha	Rh7AG140100 Rh7BG140500 Rh7CG144100 Rh7DG141400
rosa_wichuraiana	Rw7G011950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	48
AccII	CGCG	1 cut(s)	356
AciI	CCGC	1 cut(s)	356
AcoI	YGGCCR	1 cut(s)	985
AcsI	RAATTY	3 cut(s)	9, 455, 541
AfaI	GTAC	3 cut(s)	174, 838, 1080
AfiI	CCNNNNNNNGG	2 cut(s)	494, 994
AflIII	ACRYGT	1 cut(s)	663
AgsI	TTSAA	9 cut(s)	25, 278, 320, 332, 420, 546, 610, 672, 1017
AjnI	CCWGG	2 cut(s)	465, 1051
Alw21I	GWGCWC	1 cut(s)	581
Alw26I	GTCTC	2 cut(s)	312, 452
AlwNI	CAGNNNCTG	1 cut(s)	801
AoxI	GGCC	4 cut(s)	220, 358, 876, 985
ApeKI	GCWGC	2 cut(s)	325, 704
ApoI	RAATTY	3 cut(s)	9, 455, 541
AspS9I	GGNCC	3 cut(s)	358, 567, 1032
AsuHPI	GGTGA	2 cut(s)	869, 1010
AsuII	TTCGAA	1 cut(s)	1061
AvaII	GGWCC	2 cut(s)	567, 1032
BaeI	ACNNNNGTAYC	2 cut(s)	1062, 1095
BanII	GRGCYC	1 cut(s)	581
BauI	CACGAG	1 cut(s)	309
Bbv12I	GWGCWC	1 cut(s)	581
BbvI	GCAGC	2 cut(s)	337, 691
BccI	CCATC	1 cut(s)	29
BciT130I	CCWGG	2 cut(s)	467, 1053
BcoDI	GTCTC	2 cut(s)	312, 452
BfaI	CTAG	5 cut(s)	6, 197, 362, 624, 816
BglII	AGATCT	1 cut(s)	1020
BisI	GCNGC	2 cut(s)	326, 705
BlsI	GCNGC	2 cut(s)	327, 706
BmcAI	AGTACT	1 cut(s)	174
Bme1390I	CCNGG	2 cut(s)	467, 1053
Bme18I	GGWCC	2 cut(s)	567, 1032
BmgT120I	GGNCC	3 cut(s)	358, 567, 1032
BmiI	GGNNCC	3 cut(s)	533, 568, 569
BmrFI	CCNGG	2 cut(s)	467, 1053
BmrI	ACTGGG	1 cut(s)	164
BmsI	GCATC	3 cut(s)	610, 802, 898
BmuI	ACTGGG	1 cut(s)	164
BplI	GAGNNNNNCTC	2 cut(s)	992, 1024
BpmI	CTGGAG	1 cut(s)	986
Bpu14I	TTCGAA	1 cut(s)	1061
BsaI	GGTCTC	1 cut(s)	312
BsaJI	CCNNGG	1 cut(s)	1051
BsaXI	ACNNNNNCTCC	2 cut(s)	768, 798
Bsc4I	CCNNNNNNNGG	2 cut(s)	494, 994
Bse118I	RCCGGY	1 cut(s)	987
Bse1I	ACTGG	4 cut(s)	170, 602, 795, 1078
BseBI	CCWGG	2 cut(s)	467, 1053
BseDI	CCNNGG	1 cut(s)	1051
BseGI	GGATG	1 cut(s)	817
BseLI	CCNNNNNNNGG	2 cut(s)	494, 994
BseMII	CTCAG	1 cut(s)	467
BseNI	ACTGG	4 cut(s)	170, 602, 795, 1078
BseRI	GAGGAG	1 cut(s)	524
BseXI	GCAGC	2 cut(s)	337, 691
BseYI	CCCAGC	1 cut(s)	707
Bsh1236I	CGCG	1 cut(s)	356
BshFI	GGCC	4 cut(s)	222, 360, 878, 987
BsiHKAI	GWGCWC	1 cut(s)	581
BsiSI	CCGG	1 cut(s)	988
BslFI	GGGAC	3 cut(s)	94, 580, 868
BslI	CCNNNNNNNGG	2 cut(s)	494, 994
BsmAI	GTCTC	2 cut(s)	312, 452
BsmFI	GGGAC	3 cut(s)	94, 580, 868
BsmI	GAATGC	1 cut(s)	1069
BsnI	GGCC	4 cut(s)	222, 360, 878, 987
Bso31I	GGTCTC	1 cut(s)	312
Bsp119I	TTCGAA	1 cut(s)	1061
Bsp1286I	GDGCHC	1 cut(s)	581
Bsp143I	GATC	2 cut(s)	364, 1020
BspACI	CCGC	1 cut(s)	356
BspANI	GGCC	4 cut(s)	222, 360, 878, 987
BspCNI	CTCAG	1 cut(s)	468
BspFNI	CGCG	1 cut(s)	356
BspLI	GGNNCC	3 cut(s)	533, 568, 569
BspT104I	TTCGAA	1 cut(s)	1061
BspTNI	GGTCTC	1 cut(s)	312
BsrFI	RCCGGY	1 cut(s)	987
BsrI	ACTGG	4 cut(s)	170, 602, 795, 1078
BssAI	RCCGGY	1 cut(s)	987
BssECI	CCNNGG	1 cut(s)	1051
BssMI	GATC	2 cut(s)	364, 1020
BssNAI	GTATAC	1 cut(s)	49
BssSI	CACGAG	1 cut(s)	309
Bst1107I	GTATAC	1 cut(s)	49
Bst2BI	CACGAG	1 cut(s)	309
Bst2UI	CCWGG	2 cut(s)	467, 1053
Bst4CI	ACNGT	1 cut(s)	952
BstBI	TTCGAA	1 cut(s)	1061
BstC8I	GCNNGC	2 cut(s)	358, 989
BstDEI	CTNAG	2 cut(s)	155, 476
BstF5I	GGATG	1 cut(s)	817
BstFNI	CGCG	1 cut(s)	356
BstKTI	GATC	2 cut(s)	367, 1023
BstMAI	GTCTC	2 cut(s)	312, 452
BstMBI	GATC	2 cut(s)	364, 1020
BstMWI	GCNNNNNNNGC	3 cut(s)	165, 334, 481
BstNI	CCWGG	2 cut(s)	467, 1053
BstNSI	RCATGY	2 cut(s)	552, 667
BstSCI	CCNGG	2 cut(s)	465, 1051
BstUI	CGCG	1 cut(s)	356
BstV1I	GCAGC	2 cut(s)	337, 691
BstX2I	RGATCY	1 cut(s)	1020
BstXI	CCANNNNNNTGG	1 cut(s)	35
BstYI	RGATCY	1 cut(s)	1020
BstZ17I	GTATAC	1 cut(s)	49
BsuRI	GGCC	4 cut(s)	222, 360, 878, 987
BtsCI	GGATG	1 cut(s)	817
BtsIMutI	CAGTG	2 cut(s)	609, 988
Cac8I	GCNNGC	2 cut(s)	358, 989
CaiI	CAGNNNCTG	1 cut(s)	801
Cfr10I	RCCGGY	1 cut(s)	987
Cfr13I	GGNCC	3 cut(s)	358, 567, 1032
CseI	GACGC	1 cut(s)	362
Csp6I	GTAC	3 cut(s)	173, 837, 1079
CviAII	CATG	5 cut(s)	350, 500, 549, 664, 887
CviQI	GTAC	3 cut(s)	173, 837, 1079
DdeI	CTNAG	2 cut(s)	155, 476
DpnI	GATC	2 cut(s)	366, 1022
DpnII	GATC	2 cut(s)	364, 1020
EaeI	YGGCCR	1 cut(s)	985
Ecl136II	GAGCTC	1 cut(s)	579
Eco24I	GRGCYC	1 cut(s)	581
Eco31I	GGTCTC	1 cut(s)	312
Eco47I	GGWCC	2 cut(s)	567, 1032
Eco53kI	GAGCTC	1 cut(s)	579
EcoICRI	GAGCTC	1 cut(s)	579
EcoO109I	RGGNCCY	1 cut(s)	567
EcoRI	GAATTC	1 cut(s)	9
EcoRII	CCWGG	2 cut(s)	465, 1051
EcoT38I	GRGCYC	1 cut(s)	581
FaeI	CATG	5 cut(s)	353, 503, 552, 667, 890
FalI	AAGNNNNNCTT	2 cut(s)	707, 739
FaqI	GGGAC	3 cut(s)	94, 580, 868
FatI	CATG	5 cut(s)	349, 499, 548, 663, 886
FauI	CCCGC	1 cut(s)	349
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	2 cut(s)	326, 705
FokI	GGATG	1 cut(s)	824
FriOI	GRGCYC	1 cut(s)	581
Fsp4HI	GCNGC	2 cut(s)	326, 705
FspBI	CTAG	5 cut(s)	6, 197, 362, 624, 816
GluI	GCNGC	2 cut(s)	326, 705
GsaI	CCCAGC	1 cut(s)	711
GsuI	CTGGAG	1 cut(s)	986
HaeIII	GGCC	4 cut(s)	222, 360, 878, 987
HapII	CCGG	1 cut(s)	988
HgaI	GACGC	1 cut(s)	362
Hin1II	CATG	5 cut(s)	353, 503, 552, 667, 890
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HindIII	AAGCTT	2 cut(s)	751, 914
HinfI	GANTC	4 cut(s)	380, 860, 961, 1047
HpaI	GTTAAC	1 cut(s)	91
HpaII	CCGG	1 cut(s)	988
HphI	GGTGA	2 cut(s)	869, 1010
Hpy166II	GTNNAC	3 cut(s)	49, 91, 1079
Hpy188I	TCNGA	4 cut(s)	463, 681, 749, 1109
Hpy188III	TCNNGA	2 cut(s)	6, 965
Hpy8I	GTNNAC	3 cut(s)	49, 91, 1079
HpyAV	CCTTC	4 cut(s)	69, 87, 123, 755
HpyCH4III	ACNGT	1 cut(s)	952
HpyCH4V	TGCA	2 cut(s)	402, 871
HpyF10VI	GCNNNNNNNGC	3 cut(s)	165, 334, 481
HpyF3I	CTNAG	2 cut(s)	155, 476
Hsp92II	CATG	5 cut(s)	353, 503, 552, 667, 890
KflI	GGGWCCC	1 cut(s)	567
KroI	GCCGGC	1 cut(s)	987
KroNI	GCCGGC	1 cut(s)	989
KspAI	GTTAAC	1 cut(s)	91
Kzo9I	GATC	2 cut(s)	364, 1020
LmnI	GCTCC	2 cut(s)	489, 537
Lsp1109I	GCAGC	2 cut(s)	337, 691
LweI	GCATC	3 cut(s)	610, 802, 898
MaeI	CTAG	5 cut(s)	6, 197, 362, 624, 816
MaeIII	GTNAC	3 cut(s)	345, 824, 857
MalI	GATC	2 cut(s)	366, 1022
MboI	GATC	2 cut(s)	364, 1020
MboII	GAAGA	4 cut(s)	108, 255, 985, 1050
MflI	RGATCY	1 cut(s)	1020
MhlI	GDGCHC	1 cut(s)	581
MluCI	AATT	9 cut(s)	9, 40, 104, 192, 455, 490, 541, 610, 805
MlyI	GAGTC	1 cut(s)	854
MroNI	GCCGGC	1 cut(s)	987
MseI	TTAA	4 cut(s)	90, 755, 954, 1094
MslI	CAYNNNNRTG	2 cut(s)	996, 1074
MspI	CCGG	1 cut(s)	988
MspR9I	CCNGG	2 cut(s)	467, 1053
Mva1269I	GAATGC	1 cut(s)	1069
MvaI	CCWGG	2 cut(s)	467, 1053
MvnI	CGCG	1 cut(s)	356
MwoI	GCNNNNNNNGC	3 cut(s)	165, 334, 481
NaeI	GCCGGC	1 cut(s)	989
NdeII	GATC	2 cut(s)	364, 1020
NgoMIV	GCCGGC	1 cut(s)	987
NlaIII	CATG	5 cut(s)	353, 503, 552, 667, 890
NlaIV	GGNNCC	3 cut(s)	533, 568, 569
NmuCI	GTSAC	1 cut(s)	857
NspI	RCATGY	2 cut(s)	552, 667
NspV	TTCGAA	1 cut(s)	1061
PciI	ACATGT	1 cut(s)	663
PctI	GAATGC	1 cut(s)	1069
PdiI	GCCGGC	1 cut(s)	989
PfeI	GAWTC	3 cut(s)	380, 961, 1047
PkrI	GCNGC	2 cut(s)	327, 706
PleI	GAGTC	1 cut(s)	854
PpsI	GAGTC	1 cut(s)	854
PpuMI	RGGWCCY	1 cut(s)	567
PscI	ACATGT	1 cut(s)	663
Psp124BI	GAGCTC	1 cut(s)	581
Psp5II	RGGWCCY	1 cut(s)	567
Psp6I	CCWGG	2 cut(s)	465, 1051
PspFI	CCCAGC	1 cut(s)	707
PspGI	CCWGG	2 cut(s)	465, 1051
PspN4I	GGNNCC	3 cut(s)	533, 568, 569
PspPI	GGNCC	3 cut(s)	358, 567, 1032
PspPPI	RGGWCCY	1 cut(s)	567
PstNI	CAGNNNCTG	1 cut(s)	801
PsuI	RGATCY	1 cut(s)	1020
RsaI	GTAC	3 cut(s)	174, 838, 1080
RsaNI	GTAC	3 cut(s)	173, 837, 1079
RseI	CAYNNNNRTG	2 cut(s)	996, 1074
SacI	GAGCTC	1 cut(s)	581
SaqAI	TTAA	4 cut(s)	90, 755, 954, 1094
SatI	GCNGC	2 cut(s)	326, 705
Sau3AI	GATC	2 cut(s)	364, 1020
Sau96I	GGNCC	3 cut(s)	358, 567, 1032
ScaI	AGTACT	1 cut(s)	174
SchI	GAGTC	1 cut(s)	854
ScrFI	CCNGG	2 cut(s)	467, 1053
SduI	GDGCHC	1 cut(s)	581
SfaNI	GCATC	3 cut(s)	610, 802, 898
SfuI	TTCGAA	1 cut(s)	1061
SinI	GGWCC	2 cut(s)	567, 1032
SmiMI	CAYNNNNRTG	2 cut(s)	996, 1074
Sse9I	AATT	9 cut(s)	9, 40, 104, 192, 455, 490, 541, 610, 805
SsiI	CCGC	1 cut(s)	356
SspMI	CTAG	5 cut(s)	6, 197, 362, 624, 816
SstI	GAGCTC	1 cut(s)	581
StyD4I	CCNGG	2 cut(s)	465, 1051
TaaI	ACNGT	1 cut(s)	952
TaqI	TCGA	2 cut(s)	1037, 1061
TasI	AATT	9 cut(s)	9, 40, 104, 192, 455, 490, 541, 610, 805
TatI	WGTACW	1 cut(s)	172
TfiI	GAWTC	3 cut(s)	380, 961, 1047
Tru1I	TTAA	4 cut(s)	90, 755, 954, 1094
Tru9I	TTAA	4 cut(s)	90, 755, 954, 1094
TscAI	CASTG	2 cut(s)	609, 988
TseFI	GTSAC	1 cut(s)	857
TseI	GCWGC	2 cut(s)	325, 704
Tsp45I	GTSAC	1 cut(s)	857
TspDTI	ATGAA	5 cut(s)	108, 202, 218, 774, 923
TspRI	CASTG	2 cut(s)	609, 988
VpaK11BI	GGWCC	2 cut(s)	567, 1032
XapI	RAATTY	3 cut(s)	9, 455, 541
XbaI	TCTAGA	1 cut(s)	5
XceI	RCATGY	2 cut(s)	552, 667
XcmI	CCANNNNNNNNNTGG	1 cut(s)	893
XmiI	GTMKAC	1 cut(s)	48
XspI	CTAG	5 cut(s)	6, 197, 362, 624, 816
ZrmI	AGTACT	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.