Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0015622

Physical Location & Seq

Genomic Coordinates Reverse (-)

20290366 .. 20291445

Gene Structure 1080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g15800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGTCTAGAAAACTCCATGGATTGGAGCAAAAAGATGGTAATTTGATATATCCACCCCCCTTATTGATATCCCCACCAATTCCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCTATTGCCAGTATCAGTCCAGTGCTTCTTCTAGTTATAGTAATTGTAGCTGTTATGTTTTTCATCTATGGGTTTGCTCATTTGCTTTGGAGATGTCTCACAAAAAGGTCATCTTCCTCCTCAATCTTCCATTCCAATAGATACCCGGAAACCTCTGGTTCTCGAGCTATCCAAAGGCAGCTTCAGCAGCTCTTTCGGCTTCACGATTCGGGCCTCGATCAAGCCGCCATTGATTCTCTCCCTGTGTTCTTCTGCAAAGACATTGTTGGTTCAAAGGAGGAGCCATTTGATTGTGCAGTTTGTCTGTGTGAGTTTTCTGACCAGGACAAGCTGAGGTTGCTTCCTGTGTGTGGCCATGCTTTCCACATTGATTGCATTGACACTTGGCTTCTCTCGAATTCGACGTGCCCCCTTTGTAGAGGAACCCTTTTGGGGTCTGGGATTATGTTGGAGAATCCGGTGTTCGATTCCGGTGGTTCTAGGGAGATGTCAAATGCGGTTGTGAGTGATGGGGAGAACATGTGTTCGAGCGGTCGGAAAGGTTCGGTTATGGAGGAAAGTGTTGGTGAAAAGAGGGTTTTTTCTGTGAGGCTTGGGAAGTTCAAAAGCTTGAATGAAGGTGGAGAAAGTGGAGGGAAAGTGGGGGAGAGCAGTAGGTGTAATTTGGATGCTAGGAGATGTTACTCAATGGGTGCATATCAGTATGTGGTGGGCGATTCAAATCTGCAAATCGCATTGTCCCATGATTGTGATGCCAAGCTTGCCAAAGAGGGAGTTGGTAATGGGAGCTTCTCAGTTACTGGGAATTTGGAGGGGAAGAAAATCAGTGGCAGGCATAAAGGTGAGAGCTTCTCAGTTTCGAAGATTTGGCTTTGGTCTGCAAAGAACAGATTCCCGGGTTCTTCGAATGCTCAAACCGGTTTGCCTCCTTTTCGTGTAATTTCTCCCAGCAATGCTGAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

360

Amino Acids

38.82

Weight (kDa)

8.19

Isoelectric Point (pI)

50.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	135 - 178	1.2e-14	Ring finger domain
zf-RING_11	PF17123	135 - 164	3.2e-09	RING-like zinc finger
zf-rbx1	PF12678	136 - 178	1.1e-09	RING-H2 zinc finger domain
zf-C3HC4	PF00097	136 - 177	1.5e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	136 - 177	5.1e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015622)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05060
malus_domestica	MD00G1171600.v1.1 MD14G1184200.v1.1
prunus_persica	Prupe.5G176800_v2.0.a1
pyrus_communis	pycom06g15800 pycom14g15320
rosa_chinensis	RchiOBHm_Chr7g0193981
rosa_laevigata	RLG00000004226
rosa_multiflora	Rmu_sc0002389.1_g000005
rosa_roxburghii	Rroxscaffold_3G00261650
rosa_rugosa	Rorug07G0013000
rosa_samantha	Rh7AG140100 Rh7BG140500 Rh7CG144100 Rh7DG141400
rosa_wichuraiana	Rw7G011950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	22
AccBSI	CCGCTC	1 cut(s)	645
AciI	CCGC	3 cut(s)	339, 611, 645
AcoI	YGGCCR	1 cut(s)	466
AcsI	RAATTY	2 cut(s)	511, 919
AcuI	CTGAAG	1 cut(s)	281
AfiI	CCNNNNNNNGG	3 cut(s)	22, 464, 546
AflIII	ACRYGT	1 cut(s)	633
AgeI	ACCGGT	1 cut(s)	1031
AgsI	TTSAA	4 cut(s)	387, 718, 727, 834
AjiI	CACGTC	1 cut(s)	519
AjnI	CCWGG	1 cut(s)	435
AjuI	GAANNNNNNNTTGG	4 cut(s)	70, 102, 279, 311
AluBI	AGCT	9 cut(s)	164, 281, 295, 304, 445, 723, 874, 903, 963
AluI	AGCT	9 cut(s)	164, 281, 295, 304, 445, 723, 874, 903, 963
Alw26I	GTCTC	1 cut(s)	215
AlwNI	CAGNNNCTG	1 cut(s)	914
Ama87I	CYCGRG	2 cut(s)	276, 1009
AoxI	GGCC	2 cut(s)	325, 466
ApeKI	GCWGC	2 cut(s)	292, 301
ApoI	RAATTY	2 cut(s)	511, 919
AsiGI	ACCGGT	1 cut(s)	1031
Asp700I	GAANNNNTTC	1 cut(s)	1004
AspS9I	GGNCC	1 cut(s)	325
AsuC2I	CCSGG	3 cut(s)	260, 1010, 1011
AsuHPI	GGTGA	2 cut(s)	692, 968
AsuII	TTCGAA	2 cut(s)	974, 1019
AvaI	CYCGRG	2 cut(s)	276, 1009
BaeGI	GKGCMC	1 cut(s)	524
BalI	TGGCCA	1 cut(s)	468
BbvCI	CCTCAGC	1 cut(s)	446
BbvI	GCAGC	2 cut(s)	304, 313
BccI	CCATC	3 cut(s)	29, 91, 617
BcgI	CGANNNNNNTGC	2 cut(s)	290, 324
BciT130I	CCWGG	1 cut(s)	437
BcnI	CCSGG	3 cut(s)	260, 1010, 1011
BcoDI	GTCTC	1 cut(s)	215
BfaI	CTAG	4 cut(s)	6, 146, 594, 786
BisI	GCNGC	3 cut(s)	293, 302, 339
BlsI	GCNGC	3 cut(s)	294, 303, 340
Bme1390I	CCNGG	4 cut(s)	260, 437, 1010, 1011
BmeT110I	CYCGRG	2 cut(s)	276, 1009
BmgBI	CACGTC	1 cut(s)	519
BmgT120I	GGNCC	1 cut(s)	325
BmiI	GGNNCC	2 cut(s)	396, 538
BmrFI	CCNGG	4 cut(s)	260, 437, 1010, 1011
BmrI	ACTGGG	1 cut(s)	924
BmsI	GCATC	2 cut(s)	772, 856
BmuI	ACTGGG	1 cut(s)	924
BplI	GAGNNNNNCTC	2 cut(s)	950, 982
Bpu10I	CCTNAGC	1 cut(s)	446
Bpu14I	TTCGAA	2 cut(s)	974, 1019
BpuMI	CCSGG	3 cut(s)	260, 1010, 1011
BsaBI	GATNNNNATC	1 cut(s)	834
BsaJI	CCNNGG	2 cut(s)	16, 1009
BsaWI	WCCGGW	3 cut(s)	571, 584, 1031
BsaXI	ACNNNNNCTCC	4 cut(s)	620, 650, 738, 768
Bsc4I	CCNNNNNNNGG	3 cut(s)	22, 464, 546
Bse118I	RCCGGY	1 cut(s)	1031
Bse1I	ACTGG	3 cut(s)	123, 134, 919
Bse3DI	GCAATG	1 cut(s)	1072
Bse8I	GATNNNNATC	1 cut(s)	834
BseBI	CCWGG	1 cut(s)	437
BseDI	CCNNGG	2 cut(s)	16, 1009
BseGI	GGATG	1 cut(s)	787
BseJI	GATNNNNATC	1 cut(s)	834
BseLI	CCNNNNNNNGG	3 cut(s)	22, 464, 546
BseMI	GCAATG	1 cut(s)	1072
BseMII	CTCAG	3 cut(s)	437, 921, 981
BseNI	ACTGG	3 cut(s)	123, 134, 919
BseRI	GAGGAG	2 cut(s)	223, 407
BseSI	GKGCMC	1 cut(s)	524
BseXI	GCAGC	2 cut(s)	304, 313
BseYI	CCCAGC	1 cut(s)	1061
BsgI	GTGCAG	1 cut(s)	429
Bsh1285I	CGRYCG	1 cut(s)	649
BshFI	GGCC	2 cut(s)	327, 468
BshTI	ACCGGT	1 cut(s)	1031
BsiEI	CGRYCG	1 cut(s)	649
BsiHKCI	CYCGRG	2 cut(s)	276, 1009
BsiSI	CCGG	5 cut(s)	260, 572, 585, 1010, 1032
BslFI	GGGAC	1 cut(s)	838
BslI	CCNNNNNNNGG	3 cut(s)	22, 464, 546
BsmAI	GTCTC	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	838
BsmI	GAATGC	1 cut(s)	1027
BsnI	GGCC	2 cut(s)	327, 468
BsoBI	CYCGRG	2 cut(s)	276, 1009
Bsp119I	TTCGAA	2 cut(s)	974, 1019
Bsp1286I	GDGCHC	1 cut(s)	524
Bsp143I	GATC	1 cut(s)	331
Bsp19I	CCATGG	1 cut(s)	16
BspACI	CCGC	3 cut(s)	339, 611, 645
BspANI	GGCC	2 cut(s)	327, 468
BspCNI	CTCAG	3 cut(s)	438, 920, 980
BspLI	GGNNCC	2 cut(s)	396, 538
BspT104I	TTCGAA	2 cut(s)	974, 1019
BsrBI	CCGCTC	1 cut(s)	645
BsrDI	GCAATG	1 cut(s)	1072
BsrFI	RCCGGY	1 cut(s)	1031
BsrI	ACTGG	3 cut(s)	123, 134, 919
BssAI	RCCGGY	1 cut(s)	1031
BssECI	CCNNGG	2 cut(s)	16, 1009
BssMI	GATC	1 cut(s)	331
BssT1I	CCWWGG	1 cut(s)	16
Bst2UI	CCWGG	1 cut(s)	437
BstBI	TTCGAA	2 cut(s)	974, 1019
BstC8I	GCNNGC	2 cut(s)	876, 947
BstDEI	CTNAG	3 cut(s)	446, 907, 967
BstDSI	CCRYGG	1 cut(s)	16
BstF5I	GGATG	1 cut(s)	787
BstKTI	GATC	1 cut(s)	334
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	1 cut(s)	331
BstMCI	CGRYCG	1 cut(s)	649
BstMWI	GCNNNNNNNGC	5 cut(s)	298, 301, 310, 451, 875
BstNI	CCWGG	1 cut(s)	437
BstNSI	RCATGY	1 cut(s)	637
BstSCI	CCNGG	4 cut(s)	258, 435, 1008, 1009
BstSLI	GKGCMC	1 cut(s)	524
BstV1I	GCAGC	2 cut(s)	304, 313
BsuRI	GGCC	2 cut(s)	327, 468
BtgI	CCRYGG	1 cut(s)	16
BtrI	CACGTC	1 cut(s)	519
BtsCI	GGATG	1 cut(s)	787
BtsIMutI	CAGTG	2 cut(s)	141, 946
Cac8I	GCNNGC	2 cut(s)	876, 947
CaiI	CAGNNNCTG	1 cut(s)	914
Cfr10I	RCCGGY	1 cut(s)	1031
Cfr13I	GGNCC	1 cut(s)	325
Cfr9I	CCCGGG	1 cut(s)	1009
CspAI	ACCGGT	1 cut(s)	1031
CspCI	CAANNNNNGTGG	2 cut(s)	467, 502
CviAII	CATG	5 cut(s)	17, 470, 634, 857, 1077
DdeI	CTNAG	3 cut(s)	446, 907, 967
DpnI	GATC	1 cut(s)	333
DpnII	GATC	1 cut(s)	331
EaeI	YGGCCR	1 cut(s)	466
Eco130I	CCWWGG	1 cut(s)	16
Eco32I	GATATC	1 cut(s)	69
Eco57I	CTGAAG	1 cut(s)	281
Eco88I	CYCGRG	2 cut(s)	276, 1009
EcoRI	GAATTC	1 cut(s)	511
EcoRII	CCWGG	1 cut(s)	435
EcoRV	GATATC	1 cut(s)	69
EcoT14I	CCWWGG	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	5 cut(s)	20, 473, 637, 860, 1080
FalI	AAGNNNNNCTT	2 cut(s)	211, 243
FaqI	GGGAC	1 cut(s)	838
FatI	CATG	5 cut(s)	16, 469, 633, 856, 1076
Fnu4HI	GCNGC	3 cut(s)	293, 302, 339
FokI	GGATG	1 cut(s)	794
Fsp4HI	GCNGC	3 cut(s)	293, 302, 339
FspBI	CTAG	4 cut(s)	6, 146, 594, 786
GluI	GCNGC	3 cut(s)	293, 302, 339
GsaI	CCCAGC	1 cut(s)	1065
HaeIII	GGCC	2 cut(s)	327, 468
HapII	CCGG	5 cut(s)	260, 572, 585, 1010, 1032
Hin1II	CATG	5 cut(s)	20, 473, 637, 860, 1080
HindIII	AAGCTT	2 cut(s)	721, 872
HinfI	GANTC	6 cut(s)	320, 347, 568, 581, 830, 1005
HpaII	CCGG	5 cut(s)	260, 572, 585, 1010, 1032
HphI	GGTGA	2 cut(s)	692, 968
Hpy188I	TCNGA	2 cut(s)	433, 651
Hpy188III	TCNNGA	4 cut(s)	6, 276, 317, 508
Hpy99I	CGWCG	1 cut(s)	520
HpyAV	CCTTC	1 cut(s)	725
HpyCH4IV	ACGT	1 cut(s)	518
HpyCH4V	TGCA	6 cut(s)	369, 410, 489, 809, 841, 995
HpyF10VI	GCNNNNNNNGC	5 cut(s)	298, 301, 310, 451, 875
HpyF3I	CTNAG	3 cut(s)	446, 907, 967
HpySE526I	ACGT	1 cut(s)	518
Hsp92II	CATG	5 cut(s)	20, 473, 637, 860, 1080
Kzo9I	GATC	1 cut(s)	331
LmnI	GCTCC	3 cut(s)	25, 394, 900
Lsp1109I	GCAGC	2 cut(s)	304, 313
LweI	GCATC	2 cut(s)	772, 856
MaeI	CTAG	4 cut(s)	6, 146, 594, 786
MaeII	ACGT	1 cut(s)	518
MaeIII	GTNAC	2 cut(s)	794, 910
MalI	GATC	1 cut(s)	333
MbiI	CCGCTC	1 cut(s)	645
MboI	GATC	1 cut(s)	331
MhlI	GDGCHC	1 cut(s)	524
MlsI	TGGCCA	1 cut(s)	468
MluCI	AATT	7 cut(s)	40, 78, 156, 511, 775, 919, 1053
MluNI	TGGCCA	1 cut(s)	468
MmeI	TCCRAC	2 cut(s)	543, 629
Mox20I	TGGCCA	1 cut(s)	468
MroXI	GAANNNNTTC	1 cut(s)	1004
MscI	TGGCCA	1 cut(s)	468
MslI	CAYNNNNRTG	2 cut(s)	861, 954
Msp20I	TGGCCA	1 cut(s)	468
MspI	CCGG	5 cut(s)	260, 572, 585, 1010, 1032
MspR9I	CCNGG	4 cut(s)	260, 437, 1010, 1011
Mva1269I	GAATGC	1 cut(s)	1027
MvaI	CCWGG	1 cut(s)	437
MwoI	GCNNNNNNNGC	5 cut(s)	298, 301, 310, 451, 875
NciI	CCSGG	3 cut(s)	260, 1010, 1011
NcoI	CCATGG	1 cut(s)	16
NdeII	GATC	1 cut(s)	331
NlaIII	CATG	5 cut(s)	20, 473, 637, 860, 1080
NlaIV	GGNNCC	2 cut(s)	396, 538
NspI	RCATGY	1 cut(s)	637
NspV	TTCGAA	2 cut(s)	974, 1019
PaeR7I	CTCGAG	1 cut(s)	276
PciI	ACATGT	1 cut(s)	633
PcsI	WCGNNNNNNNCGW	1 cut(s)	515
PctI	GAATGC	1 cut(s)	1027
PdmI	GAANNNNTTC	1 cut(s)	1004
PfeI	GAWTC	6 cut(s)	320, 347, 568, 581, 830, 1005
PflMI	CCANNNNNTGG	1 cut(s)	22
PinAI	ACCGGT	1 cut(s)	1031
PkrI	GCNGC	3 cut(s)	294, 303, 340
PscI	ACATGT	1 cut(s)	633
Psp6I	CCWGG	1 cut(s)	435
PspFI	CCCAGC	1 cut(s)	1061
PspGI	CCWGG	1 cut(s)	435
PspN4I	GGNNCC	2 cut(s)	396, 538
PspPI	GGNCC	1 cut(s)	325
PstNI	CAGNNNCTG	1 cut(s)	914
RseI	CAYNNNNRTG	2 cut(s)	861, 954
SatI	GCNGC	3 cut(s)	293, 302, 339
Sau3AI	GATC	1 cut(s)	331
Sau96I	GGNCC	1 cut(s)	325
ScrFI	CCNGG	4 cut(s)	260, 437, 1010, 1011
SduI	GDGCHC	1 cut(s)	524
SfaNI	GCATC	2 cut(s)	772, 856
Sfr274I	CTCGAG	1 cut(s)	276
SfuI	TTCGAA	2 cut(s)	974, 1019
SlaI	CTCGAG	1 cut(s)	276
SmaI	CCCGGG	1 cut(s)	1011
SmiMI	CAYNNNNRTG	2 cut(s)	861, 954
SmlI	CTYRAG	1 cut(s)	276
SmoI	CTYRAG	1 cut(s)	276
Sse9I	AATT	7 cut(s)	40, 78, 156, 511, 775, 919, 1053
SsiI	CCGC	3 cut(s)	339, 611, 645
SspMI	CTAG	4 cut(s)	6, 146, 594, 786
StyD4I	CCNGG	4 cut(s)	258, 435, 1008, 1009
StyI	CCWWGG	1 cut(s)	16
TaiI	ACGT	1 cut(s)	521
TaqI	TCGA	8 cut(s)	277, 330, 509, 515, 579, 641, 974, 1019
TasI	AATT	7 cut(s)	40, 78, 156, 511, 775, 919, 1053
TauI	GCSGC	1 cut(s)	341
TfiI	GAWTC	6 cut(s)	320, 347, 568, 581, 830, 1005
TscAI	CASTG	2 cut(s)	141, 946
TseI	GCWGC	2 cut(s)	292, 301
TspDTI	ATGAA	3 cut(s)	102, 166, 744
TspMI	CCCGGG	1 cut(s)	1009
TspRI	CASTG	2 cut(s)	141, 946
Van91I	CCANNNNNTGG	1 cut(s)	22
XapI	RAATTY	2 cut(s)	511, 919
XbaI	TCTAGA	1 cut(s)	5
XceI	RCATGY	1 cut(s)	637
XhoI	CTCGAG	1 cut(s)	276
XmaI	CCCGGG	1 cut(s)	1009
XmnI	GAANNNNTTC	1 cut(s)	1004
XspI	CTAG	4 cut(s)	6, 146, 594, 786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.