Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0015622

Physical Location & Seq

Genomic Coordinates Forward (+)

57389701 .. 57390741

Gene Structure 1041 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004226

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGTCTACAATTCAATCTGAGCTGAACCAGGAAGATGCTAATTGGACAAATTCACCACCTGCAACTTCATTTTCAGCTCCACCATCTTCAGTTCATAGCAGTATGAGTCCGCTATTTCTTGTGGTTGTAGTAGTTCTAGCTGTTATCTTCTTCATTGGTGGTCTTGTTCATTTGGTTTTACGATTCTTCATAAAGAGGTCATCTTCCGCACTCTTTCAATCCAGTAATAGACACCCAGAAAGCTCTAGCTCTCGAAATCTTCGAAGACAGCTTCAACACCTCTTTCACTTACACGACTTGGGCCTGGACCAAGCTGTCATAGACTCTCTGCCTGTGTTCTGCTGCAAAGACATTGTTGGTTCAGATGAGCAATTTGATTGTGCTATCTGTCTGTGCGAGTTTTCTGAGCAGGACAAGCTGAGAGGCACCCTTTTGGGCTCTGGTCTAGTATTGGAAAACCCAGTGTTGAATTTTGATGATTCTAGAGCAATGTCAAGTAGGTTCAATGGTGATGGAGACAATGGGGGTTTAAGTGGTCGGAAAGTCTTAGCTTTGGAGGAAGCTGGTGTCGAAAAGAGGGTGTTTTCGGTGAGACTTGGGAAGTTCAGGAGCTCGACGAACGAAGGAGTAGGAGAAACAAGCAGGTGTAATTTGGACGCTAGGAGATGCTACTCAATGGGGACATATCAGTATGTTGTTGGTGATTCAAATCTTCAAGTGGTCTTGTCGCATGATTGTGGTGGAGGCACTGATACTAAGCTCGACATTGATGATGAACACTTTAAAGTTGGTGGGAATTTGGGGGGGAAGAAAATCAATGGGTGTCACAAAGGTGAGAGCTTCTCTGTGTCCAAGATCTGGCTTTGGTCTAAGAAGAACAAATTCCCAGGCTCTTTGAATATTCATACTGGTATGCCGTCTTTTACTGTAACTTCTCCGATCAATGGTGGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

319

Amino Acids

34.63

Weight (kDa)

6.55

Isoelectric Point (pI)

55.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015622)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05060
malus_domestica	MD00G1171600.v1.1 MD14G1184200.v1.1
prunus_persica	Prupe.5G176800_v2.0.a1
pyrus_communis	pycom06g15800 pycom14g15320
rosa_chinensis	RchiOBHm_Chr7g0193981
rosa_laevigata	RLG00000004226
rosa_multiflora	Rmu_sc0002389.1_g000005
rosa_roxburghii	Rroxscaffold_3G00261650
rosa_rugosa	Rorug07G0013000
rosa_samantha	Rh7AG140100 Rh7BG140500 Rh7CG144100 Rh7DG141400
rosa_wichuraiana	Rw7G011950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	67, 633
AasI	GACNNNNNNGTC	1 cut(s)	314
Acc36I	ACCTGC	2 cut(s)	67, 633
AccB1I	GGYRCC	1 cut(s)	425
AccB7I	CCANNNNNTGG	1 cut(s)	858
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	2 cut(s)	110, 207
AcsI	RAATTY	4 cut(s)	49, 469, 796, 881
AcuI	CTGAAG	1 cut(s)	72
AfiI	CCNNNNNNNGG	2 cut(s)	858, 944
AgsI	TTSAA	8 cut(s)	14, 218, 275, 469, 505, 708, 716, 898
AjnI	CCWGG	3 cut(s)	27, 303, 886
AleI	CACNNNNGTG	1 cut(s)	831
Alw21I	GWGCWC	1 cut(s)	614
Alw26I	GTCTC	2 cut(s)	510, 586
AoxI	GGCC	1 cut(s)	301
ApeKI	GCWGC	1 cut(s)	342
ApoI	RAATTY	4 cut(s)	49, 469, 796, 881
Asp700I	GAANNNNTTC	1 cut(s)	881
AspS9I	GGNCC	2 cut(s)	301, 307
AsuHPI	GGTGA	5 cut(s)	45, 521, 601, 713, 845
AsuII	TTCGAA	1 cut(s)	262
AvaII	GGWCC	1 cut(s)	307
BanI	GGYRCC	1 cut(s)	425
BanII	GRGCYC	2 cut(s)	440, 614
BbsI	GAAGAC	1 cut(s)	271
Bbv12I	GWGCWC	1 cut(s)	614
BbvI	GCAGC	1 cut(s)	329
BccI	CCATC	2 cut(s)	91, 506
BceAI	ACGGC	1 cut(s)	901
BciT130I	CCWGG	3 cut(s)	29, 305, 888
BcoDI	GTCTC	2 cut(s)	510, 586
BfaI	CTAG	5 cut(s)	137, 246, 446, 483, 660
BfuAI	ACCTGC	2 cut(s)	67, 633
BglII	AGATCT	1 cut(s)	855
BisI	GCNGC	1 cut(s)	343
BlsI	GCNGC	1 cut(s)	344
Bme1390I	CCNGG	3 cut(s)	29, 305, 888
Bme18I	GGWCC	1 cut(s)	307
BmgT120I	GGNCC	2 cut(s)	301, 307
BmiI	GGNNCC	1 cut(s)	427
BmrFI	CCNGG	3 cut(s)	29, 305, 888
BmrI	ACTGGG	1 cut(s)	455
BmsI	GCATC	2 cut(s)	25, 656
BmuI	ACTGGG	1 cut(s)	455
BpiI	GAAGAC	1 cut(s)	271
BplI	GAGNNNNNCTC	2 cut(s)	827, 859
Bpu14I	TTCGAA	1 cut(s)	262
BsaBI	GATNNNNATC	1 cut(s)	708
BsaJI	CCNNGG	1 cut(s)	886
Bsc4I	CCNNNNNNNGG	2 cut(s)	858, 944
Bse1I	ACTGG	3 cut(s)	222, 461, 913
Bse3DI	GCAATG	1 cut(s)	495
Bse8I	GATNNNNATC	1 cut(s)	708
BseBI	CCWGG	3 cut(s)	29, 305, 888
BseDI	CCNNGG	1 cut(s)	886
BseJI	GATNNNNATC	1 cut(s)	708
BseLI	CCNNNNNNNGG	2 cut(s)	858, 944
BseMI	GCAATG	1 cut(s)	495
BseMII	CTCAG	3 cut(s)	9, 396, 410
BseNI	ACTGG	3 cut(s)	222, 461, 913
BseXI	GCAGC	1 cut(s)	329
BshFI	GGCC	1 cut(s)	303
BshNI	GGYRCC	1 cut(s)	425
BsiHKAI	GWGCWC	1 cut(s)	614
BslFI	GGGAC	1 cut(s)	694
BslI	CCNNNNNNNGG	2 cut(s)	858, 944
BsmAI	GTCTC	2 cut(s)	510, 586
BsmFI	GGGAC	1 cut(s)	694
BsnI	GGCC	1 cut(s)	303
Bsp119I	TTCGAA	1 cut(s)	262
Bsp1286I	GDGCHC	2 cut(s)	440, 614
Bsp143I	GATC	2 cut(s)	855, 939
BspACI	CCGC	2 cut(s)	110, 207
BspANI	GGCC	1 cut(s)	303
BspCNI	CTCAG	3 cut(s)	10, 397, 411
BspLI	GGNNCC	1 cut(s)	427
BspMI	ACCTGC	2 cut(s)	67, 633
BspT104I	TTCGAA	1 cut(s)	262
BspT107I	GGYRCC	1 cut(s)	425
BsrDI	GCAATG	1 cut(s)	495
BsrI	ACTGG	3 cut(s)	222, 461, 913
BssECI	CCNNGG	1 cut(s)	886
BssMI	GATC	2 cut(s)	855, 939
Bst2UI	CCWGG	3 cut(s)	29, 305, 888
Bst4CI	ACNGT	1 cut(s)	928
BstBI	TTCGAA	1 cut(s)	262
BstDEI	CTNAG	6 cut(s)	18, 405, 419, 547, 756, 870
BstKTI	GATC	2 cut(s)	858, 942
BstMAI	GTCTC	2 cut(s)	510, 586
BstMBI	GATC	2 cut(s)	855, 939
BstMWI	GCNNNNNNNGC	1 cut(s)	415
BstNI	CCWGG	3 cut(s)	29, 305, 888
BstSCI	CCNGG	3 cut(s)	27, 303, 886
BstV1I	GCAGC	1 cut(s)	329
BstV2I	GAAGAC	1 cut(s)	271
BstX2I	RGATCY	1 cut(s)	855
BstYI	RGATCY	1 cut(s)	855
BsuRI	GGCC	1 cut(s)	303
BtsIMutI	CAGTG	2 cut(s)	468, 747
BveI	ACCTGC	2 cut(s)	67, 633
Cfr13I	GGNCC	2 cut(s)	301, 307
CseI	GACGC	1 cut(s)	665
CviAII	CATG	2 cut(s)	731, 954
DdeI	CTNAG	6 cut(s)	18, 405, 419, 547, 756, 870
DpnI	GATC	2 cut(s)	857, 941
DpnII	GATC	2 cut(s)	855, 939
DraI	TTTAAA	1 cut(s)	784
DrdI	GACNNNNNNGTC	1 cut(s)	314
DseDI	GACNNNNNNGTC	1 cut(s)	314
Ecl136II	GAGCTC	1 cut(s)	612
Eco24I	GRGCYC	2 cut(s)	440, 614
Eco47I	GGWCC	1 cut(s)	307
Eco53kI	GAGCTC	1 cut(s)	612
Eco57I	CTGAAG	1 cut(s)	72
EcoICRI	GAGCTC	1 cut(s)	612
EcoRII	CCWGG	3 cut(s)	27, 303, 886
EcoT38I	GRGCYC	2 cut(s)	440, 614
FaeI	CATG	2 cut(s)	734, 957
FaqI	GGGAC	1 cut(s)	694
FatI	CATG	2 cut(s)	730, 953
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	1 cut(s)	343
FriOI	GRGCYC	2 cut(s)	440, 614
Fsp4HI	GCNGC	1 cut(s)	343
FspBI	CTAG	5 cut(s)	137, 246, 446, 483, 660
GluI	GCNGC	1 cut(s)	343
HaeIII	GGCC	1 cut(s)	303
HgaI	GACGC	1 cut(s)	665
Hin1II	CATG	2 cut(s)	734, 957
HinfI	GANTC	5 cut(s)	106, 183, 323, 479, 704
HphI	GGTGA	5 cut(s)	45, 521, 601, 713, 845
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	5 cut(s)	19, 364, 406, 540, 939
Hpy188III	TCNNGA	3 cut(s)	252, 483, 607
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	1 cut(s)	619
HpyAV	CCTTC	1 cut(s)	617
HpyCH4III	ACNGT	1 cut(s)	928
HpyCH4V	TGCA	2 cut(s)	62, 345
HpyF10VI	GCNNNNNNNGC	1 cut(s)	415
HpyF3I	CTNAG	6 cut(s)	18, 405, 419, 547, 756, 870
Hsp92II	CATG	2 cut(s)	734, 957
Kzo9I	GATC	2 cut(s)	855, 939
LmnI	GCTCC	2 cut(s)	82, 609
Lsp1109I	GCAGC	1 cut(s)	329
LweI	GCATC	2 cut(s)	25, 656
MaeI	CTAG	5 cut(s)	137, 246, 446, 483, 660
MaeIII	GTNAC	2 cut(s)	824, 928
MalI	GATC	2 cut(s)	857, 941
MboI	GATC	2 cut(s)	855, 939
MflI	RGATCY	1 cut(s)	855
MhlI	GDGCHC	2 cut(s)	440, 614
MluCI	AATT	8 cut(s)	9, 40, 49, 371, 469, 649, 796, 881
MlyI	GAGTC	2 cut(s)	115, 317
MmeI	TCCRAC	1 cut(s)	518
MnlI	CCTC	6 cut(s)	189, 290, 416, 550, 570, 737
MroXI	GAANNNNTTC	1 cut(s)	881
MseI	TTAA	2 cut(s)	530, 783
MslI	CAYNNNNRTG	2 cut(s)	735, 831
MspR9I	CCNGG	3 cut(s)	29, 305, 888
MvaI	CCWGG	3 cut(s)	29, 305, 888
MwoI	GCNNNNNNNGC	1 cut(s)	415
NdeII	GATC	2 cut(s)	855, 939
NlaIII	CATG	2 cut(s)	734, 957
NlaIV	GGNNCC	1 cut(s)	427
NmuCI	GTSAC	1 cut(s)	824
NspV	TTCGAA	1 cut(s)	262
OliI	CACNNNNGTG	1 cut(s)	831
PaqCI	CACCTGC	2 cut(s)	67, 633
PcsI	WCGNNNNNNNCGW	1 cut(s)	259
PdmI	GAANNNNTTC	1 cut(s)	881
PfeI	GAWTC	3 cut(s)	183, 479, 704
PflMI	CCANNNNNTGG	1 cut(s)	858
PkrI	GCNGC	1 cut(s)	344
PleI	GAGTC	2 cut(s)	114, 317
PpsI	GAGTC	2 cut(s)	114, 317
Psp124BI	GAGCTC	1 cut(s)	614
Psp6I	CCWGG	3 cut(s)	27, 303, 886
PspGI	CCWGG	3 cut(s)	27, 303, 886
PspN4I	GGNNCC	1 cut(s)	427
PspPI	GGNCC	2 cut(s)	301, 307
PsuI	RGATCY	1 cut(s)	855
RseI	CAYNNNNRTG	2 cut(s)	735, 831
SacI	GAGCTC	1 cut(s)	614
SaqAI	TTAA	2 cut(s)	530, 783
SatI	GCNGC	1 cut(s)	343
Sau3AI	GATC	2 cut(s)	855, 939
Sau96I	GGNCC	2 cut(s)	301, 307
SchI	GAGTC	2 cut(s)	115, 317
ScrFI	CCNGG	3 cut(s)	29, 305, 888
SduI	GDGCHC	2 cut(s)	440, 614
SfaNI	GCATC	2 cut(s)	25, 656
SfuI	TTCGAA	1 cut(s)	262
SinI	GGWCC	1 cut(s)	307
SmiMI	CAYNNNNRTG	2 cut(s)	735, 831
Sse9I	AATT	8 cut(s)	9, 40, 49, 371, 469, 649, 796, 881
SsiI	CCGC	2 cut(s)	110, 207
SspI	AATATT	1 cut(s)	901
SspMI	CTAG	5 cut(s)	137, 246, 446, 483, 660
SstI	GAGCTC	1 cut(s)	614
StyD4I	CCNGG	3 cut(s)	27, 303, 886
TaaI	ACNGT	1 cut(s)	928
TaqI	TCGA	5 cut(s)	253, 262, 570, 614, 762
TasI	AATT	8 cut(s)	9, 40, 49, 371, 469, 649, 796, 881
TfiI	GAWTC	3 cut(s)	183, 479, 704
Tru1I	TTAA	2 cut(s)	530, 783
Tru9I	TTAA	2 cut(s)	530, 783
TscAI	CASTG	2 cut(s)	468, 754
TseFI	GTSAC	1 cut(s)	824
TseI	GCWGC	1 cut(s)	342
Tsp45I	GTSAC	1 cut(s)	824
TspDTI	ATGAA	7 cut(s)	57, 83, 142, 158, 178, 789, 893
TspRI	CASTG	2 cut(s)	468, 754
Van91I	CCANNNNNTGG	1 cut(s)	858
VpaK11BI	GGWCC	1 cut(s)	307
XapI	RAATTY	4 cut(s)	49, 469, 796, 881
XbaI	TCTAGA	1 cut(s)	482
XmiI	GTMKAC	1 cut(s)	5
XmnI	GAANNNNTTC	1 cut(s)	881
XspI	CTAG	5 cut(s)	137, 246, 446, 483, 660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.