Rh7CG144100

finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0015622
Physical Location & Seq
Reverse (-)
11748190 .. 11750330
2141 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG144100.1

Sequence Viewer

Length: 1044 bp
ATGTCTACAATTCAATCTGAGCTCAACCAGGAAGATGCTAATTGGAGAAACTCACCACCCCCAACTTCATTTTCAGCTCCACCATCTTCAGTTCATAGCAGTATGAGTCCGCTATTTCTTGTGGTTGTAGTAGTTCTAGCTGTTATCTTCTTCATTGGTGGTCTTGTTCATTTGGTTTTACGATTCTTCATAAAGAGGTCATCTTCCCCACTCTTTCAATCCAGTAATAGACACCCAGCAGAAAGCTCTAGCTCTCGAAATCTTCGAAGACAGCTTCAACACCTCTTTCACTTACACGACTTGGGCCTGGACCAAGCTGTCATAGACTCTCTGCCTGTGTTCTGCTGCAAAGACATTGTTGGTTCAGATGAGCAATTTGACTGTGCTATCTGTCTGTGTGAGTTCTCTGAGCAGGACCAGCTGAGGTTGCTTCCTAATTGTGGTCATGCATTTCATATGGATTGTATTGACACTTGGCTTCTCTCAAATTCAACATGCCCTCTTTGTAGAGGCACCCTTTTGGGCTCTGGTCTAGTATTGGAAAACCCAGTGTTGAATTTTGATGATTCTAGAGCAATGTCAAGTCGGTTCAATGGTGATGGAGACAATGGGGGTTTAAGTGGTCGGAGAGTCTTAGCTTTGGAGGAAGCTGGTGTCGAAAAGAGGGTGTTTTCGGTGAGACTTGGGAAGTTCAGGAGCTCGACGAACGAAGGAGTAGAAGAAACAAGCAGGTGTAATTTGGATGCTAGGAGATGCTACTCAATGGGGACATATCAGTATGTGGTTGGTGATTCAAATCTTCAAGTGGTCTTGTCGCATGATTGTGGTGGAGGCACTGATACGAAGCTTGACATTGATGATGAACACTTTAAAGTTGGTGGGAATTTGGAGGGGAAGAAAATCAATGGGTGTCATAAAGGTGAGAGCTTCTCTGTGTCTAAGATCTGGCTTTGGTCTAAGAAGAACAAATTCCCAGGCTCTTTGAATACTCATACCGGTATGCCTTCTTTTACTGTAACTTCTCCAATCAATGGTGGAACATGA

Protein Analysis

347

Amino Acids

38.11

Weight (kDa)

6.17

Isoelectric Point (pI)

56.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-ANAPC11 PF12861 125 - 172 7.1e-06 Anaphase-promoting complex subunit 11 RING-H2 finger
zf-RING_2 PF13639 127 - 170 2.5e-15 Ring finger domain
zf-RING_11 PF17123 127 - 156 4.8e-10 RING-like zinc finger
zf-rbx1 PF12678 127 - 170 1.2e-09 RING-H2 zinc finger domain
zf-RING_5 PF14634 127 - 170 5.5e-06 zinc-RING finger domain
zf-C3HC4 PF00097 128 - 169 7.5e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 128 - 169 1.6e-06 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 128 - 167 1e-05 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015622)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g05060
malus_domestica MD00G1171600.v1.1 MD14G1184200.v1.1
prunus_persica Prupe.5G176800_v2.0.a1
pyrus_communis pycom06g15800 pycom14g15320
rosa_chinensis RchiOBHm_Chr7g0193981
rosa_laevigata RLG00000004226
rosa_multiflora Rmu_sc0002389.1_g000005
rosa_roxburghii Rroxscaffold_3G00261650
rosa_rugosa Rorug07G0013000
rosa_samantha Rh7AG140100 Rh7BG140500 Rh7CG144100 Rh7DG141400
rosa_wichuraiana Rw7G011950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 720
AasI GACNNNNNNGTC 1 cut(s) 317
Acc36I ACCTGC 1 cut(s) 720
AccB1I GGYRCC 1 cut(s) 512
AccB7I CCANNNNNTGG 1 cut(s) 1031
AccI GTMKAC 1 cut(s) 5
AciI CCGC 1 cut(s) 110
AcsI RAATTY 4 cut(s) 487, 556, 883, 968
AcuI CTGAAG 1 cut(s) 72
AfiI CCNNNNNNNGG 2 cut(s) 440, 1031
AgeI ACCGGT 1 cut(s) 995
AgsI TTSAA 9 cut(s) 14, 218, 278, 492, 556, 592, 795, 803, 985
AjnI CCWGG 3 cut(s) 27, 306, 973
AjuI GAANNNNNNNTTGG 2 cut(s) 55, 87
Alw21I GWGCWC 2 cut(s) 24, 701
Alw26I GTCTC 2 cut(s) 597, 673
AoxI GGCC 1 cut(s) 304
ApeKI GCWGC 1 cut(s) 345
ApoI RAATTY 4 cut(s) 487, 556, 883, 968
AsiGI ACCGGT 1 cut(s) 995
Asp700I GAANNNNTTC 1 cut(s) 968
AspS9I GGNCC 3 cut(s) 304, 310, 415
AsuHPI GGTGA 5 cut(s) 45, 608, 688, 800, 932
AsuII TTCGAA 1 cut(s) 265
AvaII GGWCC 2 cut(s) 310, 415
BanI GGYRCC 1 cut(s) 512
BanII GRGCYC 3 cut(s) 24, 527, 701
BbsI GAAGAC 1 cut(s) 274
Bbv12I GWGCWC 2 cut(s) 24, 701
BbvCI CCTCAGC 1 cut(s) 422
BbvI GCAGC 1 cut(s) 332
BccI CCATC 2 cut(s) 91, 593
BciT130I CCWGG 3 cut(s) 29, 308, 975
BcoDI GTCTC 2 cut(s) 597, 673
BfaI CTAG 5 cut(s) 137, 249, 533, 570, 747
BfuAI ACCTGC 1 cut(s) 720
BglII AGATCT 1 cut(s) 942
BisI GCNGC 1 cut(s) 346
BlsI GCNGC 1 cut(s) 347
Bme1390I CCNGG 3 cut(s) 29, 308, 975
Bme18I GGWCC 2 cut(s) 310, 415
BmgT120I GGNCC 3 cut(s) 304, 310, 415
BmiI GGNNCC 1 cut(s) 514
BmrFI CCNGG 3 cut(s) 29, 308, 975
BmrI ACTGGG 1 cut(s) 542
BmsI GCATC 3 cut(s) 25, 733, 743
BmuI ACTGGG 1 cut(s) 542
BpiI GAAGAC 1 cut(s) 274
BplI GAGNNNNNCTC 2 cut(s) 914, 946
Bpu10I CCTNAGC 1 cut(s) 422
Bpu14I TTCGAA 1 cut(s) 265
BsaBI GATNNNNATC 1 cut(s) 795
BsaJI CCNNGG 1 cut(s) 973
BsaWI WCCGGW 1 cut(s) 995
Bsc4I CCNNNNNNNGG 2 cut(s) 440, 1031
Bse118I RCCGGY 1 cut(s) 995
Bse1I ACTGG 2 cut(s) 222, 548
Bse3DI GCAATG 1 cut(s) 582
Bse8I GATNNNNATC 1 cut(s) 795
BseBI CCWGG 3 cut(s) 29, 308, 975
BseDI CCNNGG 1 cut(s) 973
BseGI GGATG 1 cut(s) 748
BseJI GATNNNNATC 1 cut(s) 795
BseLI CCNNNNNNNGG 2 cut(s) 440, 1031
BseMI GCAATG 1 cut(s) 582
BseMII CTCAG 3 cut(s) 9, 399, 413
BseNI ACTGG 2 cut(s) 222, 548
BseXI GCAGC 1 cut(s) 332
BseYI CCCAGC 1 cut(s) 235
BshFI GGCC 1 cut(s) 306
BshNI GGYRCC 1 cut(s) 512
BshTI ACCGGT 1 cut(s) 995
BsiHKAI GWGCWC 2 cut(s) 24, 701
BsiSI CCGG 1 cut(s) 996
BslFI GGGAC 1 cut(s) 781
BslI CCNNNNNNNGG 2 cut(s) 440, 1031
BsmAI GTCTC 2 cut(s) 597, 673
BsmFI GGGAC 1 cut(s) 781
BsnI GGCC 1 cut(s) 306
Bsp119I TTCGAA 1 cut(s) 265
Bsp1286I GDGCHC 3 cut(s) 24, 527, 701
Bsp143I GATC 1 cut(s) 942
BspACI CCGC 1 cut(s) 110
BspANI GGCC 1 cut(s) 306
BspCNI CTCAG 3 cut(s) 10, 400, 414
BspLI GGNNCC 1 cut(s) 514
BspMI ACCTGC 1 cut(s) 720
BspT104I TTCGAA 1 cut(s) 265
BspT107I GGYRCC 1 cut(s) 512
BsrDI GCAATG 1 cut(s) 582
BsrFI RCCGGY 1 cut(s) 995
BsrI ACTGG 2 cut(s) 222, 548
BssAI RCCGGY 1 cut(s) 995
BssECI CCNNGG 1 cut(s) 973
BssMI GATC 1 cut(s) 942
Bst2UI CCWGG 3 cut(s) 29, 308, 975
Bst4CI ACNGT 2 cut(s) 383, 1015
BstBI TTCGAA 1 cut(s) 265
BstDEI CTNAG 6 cut(s) 18, 408, 422, 634, 939, 957
BstF5I GGATG 1 cut(s) 748
BstKTI GATC 1 cut(s) 945
BstMAI GTCTC 2 cut(s) 597, 673
BstMBI GATC 1 cut(s) 942
BstMWI GCNNNNNNNGC 2 cut(s) 418, 427
BstNI CCWGG 3 cut(s) 29, 308, 975
BstNSI RCATGY 1 cut(s) 498
BstSCI CCNGG 3 cut(s) 27, 306, 973
BstV1I GCAGC 1 cut(s) 332
BstV2I GAAGAC 1 cut(s) 274
BstX2I RGATCY 1 cut(s) 942
BstYI RGATCY 1 cut(s) 942
BsuRI GGCC 1 cut(s) 306
BtsCI GGATG 1 cut(s) 748
BtsIMutI CAGTG 2 cut(s) 555, 834
BveI ACCTGC 1 cut(s) 720
Cfr10I RCCGGY 1 cut(s) 995
Cfr13I GGNCC 3 cut(s) 304, 310, 415
CspAI ACCGGT 1 cut(s) 995
CviAII CATG 4 cut(s) 446, 495, 818, 1041
DdeI CTNAG 6 cut(s) 18, 408, 422, 634, 939, 957
DpnI GATC 1 cut(s) 944
DpnII GATC 1 cut(s) 942
DraI TTTAAA 1 cut(s) 871
DrdI GACNNNNNNGTC 1 cut(s) 317
DseDI GACNNNNNNGTC 1 cut(s) 317
Ecl136II GAGCTC 2 cut(s) 22, 699
Eco24I GRGCYC 3 cut(s) 24, 527, 701
Eco47I GGWCC 2 cut(s) 310, 415
Eco53kI GAGCTC 2 cut(s) 22, 699
Eco57I CTGAAG 1 cut(s) 72
EcoICRI GAGCTC 2 cut(s) 22, 699
EcoRII CCWGG 3 cut(s) 27, 306, 973
EcoT22I ATGCAT 1 cut(s) 451
EcoT38I GRGCYC 3 cut(s) 24, 527, 701
FaeI CATG 4 cut(s) 449, 498, 821, 1044
FaqI GGGAC 1 cut(s) 781
FatI CATG 4 cut(s) 445, 494, 817, 1040
FauNDI CATATG 1 cut(s) 456
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 346
FokI GGATG 1 cut(s) 755
FriOI GRGCYC 3 cut(s) 24, 527, 701
Fsp4HI GCNGC 1 cut(s) 346
FspBI CTAG 5 cut(s) 137, 249, 533, 570, 747
GluI GCNGC 1 cut(s) 346
GsaI CCCAGC 1 cut(s) 239
HaeIII GGCC 1 cut(s) 306
HapII CCGG 1 cut(s) 996
Hin1II CATG 4 cut(s) 449, 498, 821, 1044
HindIII AAGCTT 1 cut(s) 845
HinfI GANTC 6 cut(s) 106, 183, 326, 566, 630, 791
HpaII CCGG 1 cut(s) 996
HphI GGTGA 5 cut(s) 45, 608, 688, 800, 932
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 4 cut(s) 19, 367, 409, 627
Hpy188III TCNNGA 3 cut(s) 255, 570, 694
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 1 cut(s) 706
HpyAV CCTTC 2 cut(s) 704, 1014
HpyCH4III ACNGT 2 cut(s) 383, 1015
HpyCH4V TGCA 2 cut(s) 348, 449
HpyF10VI GCNNNNNNNGC 2 cut(s) 418, 427
HpyF3I CTNAG 6 cut(s) 18, 408, 422, 634, 939, 957
Hsp92II CATG 4 cut(s) 449, 498, 821, 1044
Kzo9I GATC 1 cut(s) 942
LmnI GCTCC 2 cut(s) 82, 696
Lsp1109I GCAGC 1 cut(s) 332
LweI GCATC 3 cut(s) 25, 733, 743
MaeI CTAG 5 cut(s) 137, 249, 533, 570, 747
MaeIII GTNAC 1 cut(s) 1015
MalI GATC 1 cut(s) 944
MboI GATC 1 cut(s) 942
MflI RGATCY 1 cut(s) 942
MhlI GDGCHC 3 cut(s) 24, 527, 701
MluCI AATT 9 cut(s) 9, 40, 374, 436, 487, 556, 736, 883, 968
MlyI GAGTC 3 cut(s) 115, 320, 639
MmeI TCCRAC 1 cut(s) 605
MnlI CCTC 9 cut(s) 189, 293, 417, 503, 510, 637, 657, 824, 883
Mph1103I ATGCAT 1 cut(s) 451
MroXI GAANNNNTTC 1 cut(s) 968
MseI TTAA 2 cut(s) 617, 870
MslI CAYNNNNRTG 2 cut(s) 822, 918
MspA1I CMGCKG 1 cut(s) 421
MspI CCGG 1 cut(s) 996
MspR9I CCNGG 3 cut(s) 29, 308, 975
MvaI CCWGG 3 cut(s) 29, 308, 975
MwoI GCNNNNNNNGC 2 cut(s) 418, 427
NdeI CATATG 1 cut(s) 456
NdeII GATC 1 cut(s) 942
NlaIII CATG 4 cut(s) 449, 498, 821, 1044
NlaIV GGNNCC 1 cut(s) 514
NsiI ATGCAT 1 cut(s) 451
NspI RCATGY 1 cut(s) 498
NspV TTCGAA 1 cut(s) 265
PaqCI CACCTGC 1 cut(s) 720
PcsI WCGNNNNNNNCGW 1 cut(s) 262
PdmI GAANNNNTTC 1 cut(s) 968
PfeI GAWTC 3 cut(s) 183, 566, 791
PflMI CCANNNNNTGG 1 cut(s) 1031
PinAI ACCGGT 1 cut(s) 995
PkrI GCNGC 1 cut(s) 347
PleI GAGTC 3 cut(s) 114, 320, 638
PpsI GAGTC 3 cut(s) 114, 320, 638
Psp124BI GAGCTC 2 cut(s) 24, 701
Psp6I CCWGG 3 cut(s) 27, 306, 973
PspFI CCCAGC 1 cut(s) 235
PspGI CCWGG 3 cut(s) 27, 306, 973
PspN4I GGNNCC 1 cut(s) 514
PspPI GGNCC 3 cut(s) 304, 310, 415
PsuI RGATCY 1 cut(s) 942
PvuII CAGCTG 1 cut(s) 421
RseI CAYNNNNRTG 2 cut(s) 822, 918
SacI GAGCTC 2 cut(s) 24, 701
SaqAI TTAA 2 cut(s) 617, 870
SatI GCNGC 1 cut(s) 346
Sau3AI GATC 1 cut(s) 942
Sau96I GGNCC 3 cut(s) 304, 310, 415
SchI GAGTC 3 cut(s) 115, 320, 639
ScrFI CCNGG 3 cut(s) 29, 308, 975
SduI GDGCHC 3 cut(s) 24, 527, 701
SfaNI GCATC 3 cut(s) 25, 733, 743
SfuI TTCGAA 1 cut(s) 265
SinI GGWCC 2 cut(s) 310, 415
SmiMI CAYNNNNRTG 2 cut(s) 822, 918
Sse9I AATT 9 cut(s) 9, 40, 374, 436, 487, 556, 736, 883, 968
SsiI CCGC 1 cut(s) 110
SspMI CTAG 5 cut(s) 137, 249, 533, 570, 747
SstI GAGCTC 2 cut(s) 24, 701
StyD4I CCNGG 3 cut(s) 27, 306, 973
TaaI ACNGT 2 cut(s) 383, 1015
TaqI TCGA 4 cut(s) 256, 265, 657, 701
TasI AATT 9 cut(s) 9, 40, 374, 436, 487, 556, 736, 883, 968
TfiI GAWTC 3 cut(s) 183, 566, 791
Tru1I TTAA 2 cut(s) 617, 870
Tru9I TTAA 2 cut(s) 617, 870
TscAI CASTG 2 cut(s) 555, 841
TseI GCWGC 1 cut(s) 345
TspDTI ATGAA 7 cut(s) 57, 83, 142, 158, 178, 443, 876
TspRI CASTG 2 cut(s) 555, 841
Van91I CCANNNNNTGG 1 cut(s) 1031
VpaK11BI GGWCC 2 cut(s) 310, 415
XapI RAATTY 4 cut(s) 487, 556, 883, 968
XbaI TCTAGA 1 cut(s) 569
XceI RCATGY 1 cut(s) 498
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 968
XspI CTAG 5 cut(s) 137, 249, 533, 570, 747
Zsp2I ATGCAT 1 cut(s) 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.