Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0015622

Physical Location & Seq

Genomic Coordinates Reverse (-)

17960522 .. 17961583

Gene Structure 1062 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g15320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGTCTAGAATTCTCCATGGATGGCAGCAAAAAGATGATAATTTGATATATCCAACCCCCTCATTGATAACCCCACCATCATCATCTCCTTCTTCATCTACTGGCAGTATCAGTCCAGTGCTTCTTTTGGTTATAGTAATTGTAGCTGTTATGTTTTTTATCTATGGGTTTGCTCATTTGCTTTTGAGATGCCTCATAAAAAGGTCACCTTCCTCCACAATCTTTCAATCCAATAGATTCCCAGAAACCTCTGGGTCTCGGGCTATCCAAAGGCAGCTTCAGCAGCTTTTTCGCCTTCACGATTCGGGCCTTGATCAAGCCACCATTGATTCTCTACCTGTGTTCTTCTGCAAAGACATTGTTGGTTTGAAGGAGGAGCCATTTGATTGTGCAGTTTGTCTGTGTGAATTTTCTGACCAGGACAAGCTGAGGTTGCTTCCTGTGTGCGATCATGCTTTCCACATTGATTGCATTGACACTTGGCTTCTCTCGAATTCGACGTGCCCCCTTTGTAGAGGAACCATTTTGGGGTCTGGGATTTTGTTGGAGAATCCGGTGTTCGATTTCGGTGATTCTAGGGAGATGTCAGATGGGGTTGTGAGTGATGGGGAGAACGTGTGTTCGAGCGGTCGGAAAGGTTTGGTTGTGGAGGAAGGTGTTGGTGAAAAGAAGGTTTATTCTGTGAGGCTTGGGAAGTTCAAAAGCCTGAATGAAGGGGATGAAAGTGGAGGGAAAGTGGGGGAGAGCAGTAGGTGTAATTTGGATGCCAGGAGATGTTACTCAATGGGTGCATATCAGTATGTGGTTGGCGATTCAAATCTCCAAGTTGCATTATCCCCCGACTGTGATGCCAAGCTTGCCAAAGAGGGAGTTAGAAATGGGAGCTTCTCAGTTAATGAGAATTTGGAAGGGAAGAAAATCAGTAGCAGACATAAGGGTGAGAGTTTCTCGGTTTCGAAGATTTGGCTTTGGTCTGCAAAAAACAGATTCCCGGGTTCTTCAAATGCTCAAACCGGTTTGCCTCCTTTTCGTGTAATTTCTCCGATCAATGCTGAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

354

Amino Acids

38.66

Weight (kDa)

6.33

Isoelectric Point (pI)

51.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	129 - 172	6.9e-14	Ring finger domain
zf-rbx1	PF12678	129 - 172	1.3e-09	RING-H2 zinc finger domain
zf-RING_11	PF17123	129 - 158	9.2e-09	RING-like zinc finger
zf-C3HC4	PF00097	130 - 171	4.2e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015622)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05060
malus_domestica	MD00G1171600.v1.1 MD14G1184200.v1.1
prunus_persica	Prupe.5G176800_v2.0.a1
pyrus_communis	pycom06g15800 pycom14g15320
rosa_chinensis	RchiOBHm_Chr7g0193981
rosa_laevigata	RLG00000004226
rosa_multiflora	Rmu_sc0002389.1_g000005
rosa_roxburghii	Rroxscaffold_3G00261650
rosa_rugosa	Rorug07G0013000
rosa_samantha	Rh7AG140100 Rh7BG140500 Rh7CG144100 Rh7DG141400
rosa_wichuraiana	Rw7G011950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	627
AciI	CCGC	1 cut(s)	627
AcsI	RAATTY	4 cut(s)	9, 407, 493, 901
AcuI	CTGAAG	1 cut(s)	263
AfiI	CCNNNNNNNGG	1 cut(s)	528
AflIII	ACRYGT	1 cut(s)	615
AgeI	ACCGGT	1 cut(s)	1013
AgsI	TTSAA	5 cut(s)	227, 370, 700, 816, 1002
AjiI	CACGTC	1 cut(s)	501
AjnI	CCWGG	2 cut(s)	417, 767
AjuI	GAANNNNNNNTTGG	2 cut(s)	261, 293
AluBI	AGCT	6 cut(s)	146, 277, 286, 427, 856, 885
AluI	AGCT	6 cut(s)	146, 277, 286, 427, 856, 885
Alw26I	GTCTC	1 cut(s)	261
Ama87I	CYCGRG	2 cut(s)	258, 991
AoxI	GGCC	1 cut(s)	307
ApeKI	GCWGC	3 cut(s)	25, 274, 283
ApoI	RAATTY	4 cut(s)	9, 407, 493, 901
AsiGI	ACCGGT	1 cut(s)	1013
AspS9I	GGNCC	1 cut(s)	307
AsuC2I	CCSGG	2 cut(s)	992, 993
AsuHPI	GGTGA	4 cut(s)	198, 581, 674, 950
AsuII	TTCGAA	1 cut(s)	956
AvaI	CYCGRG	2 cut(s)	258, 991
BaeGI	GKGCMC	1 cut(s)	506
BbvCI	CCTCAGC	1 cut(s)	428
BbvI	GCAGC	3 cut(s)	37, 286, 295
BccI	CCATC	4 cut(s)	15, 85, 584, 599
BcgI	CGANNNNNNTGC	4 cut(s)	272, 306, 830, 864
BciT130I	CCWGG	2 cut(s)	419, 769
BclI	TGATCA	1 cut(s)	313
BcnI	CCSGG	2 cut(s)	992, 993
BcoDI	GTCTC	1 cut(s)	261
BfaI	CTAG	2 cut(s)	6, 576
BisI	GCNGC	3 cut(s)	26, 275, 284
BlsI	GCNGC	3 cut(s)	27, 276, 285
Bme1390I	CCNGG	4 cut(s)	419, 769, 992, 993
BmeT110I	CYCGRG	2 cut(s)	258, 991
BmgBI	CACGTC	1 cut(s)	501
BmgT120I	GGNCC	1 cut(s)	307
BmiI	GGNNCC	2 cut(s)	378, 520
BmrFI	CCNGG	4 cut(s)	419, 769, 992, 993
BmsI	GCATC	3 cut(s)	179, 754, 838
BplI	GAGNNNNNCTC	2 cut(s)	932, 964
Bpu10I	CCTNAGC	1 cut(s)	428
Bpu14I	TTCGAA	1 cut(s)	956
BpuMI	CCSGG	2 cut(s)	992, 993
BsaBI	GATNNNNATC	1 cut(s)	816
BsaI	GGTCTC	1 cut(s)	261
BsaJI	CCNNGG	2 cut(s)	16, 991
BsaWI	WCCGGW	2 cut(s)	553, 1013
BsaXI	ACNNNNNCTCC	4 cut(s)	602, 632, 720, 750
Bsc4I	CCNNNNNNNGG	1 cut(s)	528
Bse118I	RCCGGY	1 cut(s)	1013
Bse1I	ACTGG	2 cut(s)	106, 116
Bse8I	GATNNNNATC	1 cut(s)	816
BseBI	CCWGG	2 cut(s)	419, 769
BseDI	CCNNGG	2 cut(s)	16, 991
BseGI	GGATG	3 cut(s)	26, 724, 769
BseJI	GATNNNNATC	1 cut(s)	816
BseLI	CCNNNNNNNGG	1 cut(s)	528
BseMII	CTCAG	2 cut(s)	419, 903
BseNI	ACTGG	2 cut(s)	106, 116
BseRI	GAGGAG	1 cut(s)	389
BseSI	GKGCMC	1 cut(s)	506
BseXI	GCAGC	3 cut(s)	37, 286, 295
BsgI	GTGCAG	1 cut(s)	411
Bsh1285I	CGRYCG	1 cut(s)	631
BshFI	GGCC	1 cut(s)	309
BshTI	ACCGGT	1 cut(s)	1013
BsiEI	CGRYCG	1 cut(s)	631
BsiHKCI	CYCGRG	2 cut(s)	258, 991
BsiSI	CCGG	3 cut(s)	554, 992, 1014
BslI	CCNNNNNNNGG	1 cut(s)	528
BsmAI	GTCTC	1 cut(s)	261
BsnI	GGCC	1 cut(s)	309
Bso31I	GGTCTC	1 cut(s)	261
BsoBI	CYCGRG	2 cut(s)	258, 991
Bsp119I	TTCGAA	1 cut(s)	956
Bsp1286I	GDGCHC	1 cut(s)	506
Bsp143I	GATC	3 cut(s)	313, 448, 1044
Bsp19I	CCATGG	1 cut(s)	16
BspACI	CCGC	1 cut(s)	627
BspANI	GGCC	1 cut(s)	309
BspCNI	CTCAG	2 cut(s)	420, 902
BspLI	GGNNCC	2 cut(s)	378, 520
BspT104I	TTCGAA	1 cut(s)	956
BspTNI	GGTCTC	1 cut(s)	261
BsrBI	CCGCTC	1 cut(s)	627
BsrFI	RCCGGY	1 cut(s)	1013
BsrI	ACTGG	2 cut(s)	106, 116
BssAI	RCCGGY	1 cut(s)	1013
BssECI	CCNNGG	2 cut(s)	16, 991
BssMI	GATC	3 cut(s)	313, 448, 1044
BssT1I	CCWWGG	1 cut(s)	16
Bst2UI	CCWGG	2 cut(s)	419, 769
Bst4CI	ACNGT	1 cut(s)	845
BstBI	TTCGAA	1 cut(s)	956
BstC8I	GCNNGC	1 cut(s)	858
BstDEI	CTNAG	2 cut(s)	428, 889
BstDSI	CCRYGG	1 cut(s)	16
BstEII	GGTNACC	1 cut(s)	204
BstF5I	GGATG	3 cut(s)	26, 724, 769
BstKTI	GATC	3 cut(s)	316, 451, 1047
BstMAI	GTCTC	1 cut(s)	261
BstMBI	GATC	3 cut(s)	313, 448, 1044
BstMCI	CGRYCG	1 cut(s)	631
BstMWI	GCNNNNNNNGC	4 cut(s)	280, 283, 433, 857
BstNI	CCWGG	2 cut(s)	419, 769
BstPI	GGTNACC	1 cut(s)	204
BstSCI	CCNGG	4 cut(s)	417, 767, 990, 991
BstSLI	GKGCMC	1 cut(s)	506
BstV1I	GCAGC	3 cut(s)	37, 286, 295
BsuRI	GGCC	1 cut(s)	309
BtgI	CCRYGG	1 cut(s)	16
BtrI	CACGTC	1 cut(s)	501
BtsCI	GGATG	3 cut(s)	26, 724, 769
BtsIMutI	CAGTG	1 cut(s)	123
Cac8I	GCNNGC	1 cut(s)	858
Cfr10I	RCCGGY	1 cut(s)	1013
Cfr13I	GGNCC	1 cut(s)	307
Cfr9I	CCCGGG	1 cut(s)	991
CspAI	ACCGGT	1 cut(s)	1013
CspCI	CAANNNNNGTGG	2 cut(s)	449, 484
CviAII	CATG	3 cut(s)	17, 452, 1059
DdeI	CTNAG	2 cut(s)	428, 889
DpnI	GATC	3 cut(s)	315, 450, 1046
DpnII	GATC	3 cut(s)	313, 448, 1044
Eco130I	CCWWGG	1 cut(s)	16
Eco31I	GGTCTC	1 cut(s)	261
Eco57I	CTGAAG	1 cut(s)	263
Eco88I	CYCGRG	2 cut(s)	258, 991
Eco91I	GGTNACC	1 cut(s)	204
EcoO65I	GGTNACC	1 cut(s)	204
EcoRI	GAATTC	2 cut(s)	9, 493
EcoRII	CCWGG	2 cut(s)	417, 767
EcoT14I	CCWWGG	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	3 cut(s)	20, 455, 1062
FalI	AAGNNNNNCTT	2 cut(s)	193, 225
FatI	CATG	3 cut(s)	16, 451, 1058
FbaI	TGATCA	1 cut(s)	313
Fnu4HI	GCNGC	3 cut(s)	26, 275, 284
FokI	GGATG	3 cut(s)	33, 731, 776
Fsp4HI	GCNGC	3 cut(s)	26, 275, 284
FspBI	CTAG	2 cut(s)	6, 576
GluI	GCNGC	3 cut(s)	26, 275, 284
HaeIII	GGCC	1 cut(s)	309
HapII	CCGG	3 cut(s)	554, 992, 1014
Hin1II	CATG	3 cut(s)	20, 455, 1062
HindIII	AAGCTT	1 cut(s)	854
HinfI	GANTC	7 cut(s)	237, 302, 329, 550, 572, 812, 987
HpaII	CCGG	3 cut(s)	554, 992, 1014
HphI	GGTGA	4 cut(s)	198, 581, 674, 950
Hpy188I	TCNGA	4 cut(s)	415, 589, 633, 1044
Hpy188III	TCNNGA	3 cut(s)	6, 299, 490
Hpy99I	CGWCG	1 cut(s)	502
HpyAV	CCTTC	8 cut(s)	99, 219, 305, 364, 647, 664, 707, 902
HpyCH4III	ACNGT	1 cut(s)	845
HpyCH4IV	ACGT	2 cut(s)	500, 615
HpyCH4V	TGCA	6 cut(s)	351, 392, 471, 791, 830, 977
HpyF10VI	GCNNNNNNNGC	4 cut(s)	280, 283, 433, 857
HpyF3I	CTNAG	2 cut(s)	428, 889
HpySE526I	ACGT	2 cut(s)	500, 615
Hsp92II	CATG	3 cut(s)	20, 455, 1062
Ksp22I	TGATCA	1 cut(s)	313
Kzo9I	GATC	3 cut(s)	313, 448, 1044
LmnI	GCTCC	2 cut(s)	376, 882
Lsp1109I	GCAGC	3 cut(s)	37, 286, 295
LweI	GCATC	3 cut(s)	179, 754, 838
MaeI	CTAG	2 cut(s)	6, 576
MaeII	ACGT	2 cut(s)	500, 615
MaeIII	GTNAC	2 cut(s)	204, 776
MalI	GATC	3 cut(s)	315, 450, 1046
MbiI	CCGCTC	1 cut(s)	627
MboI	GATC	3 cut(s)	313, 448, 1044
MboII	GAAGA	5 cut(s)	84, 337, 925, 970, 990
MhlI	GDGCHC	1 cut(s)	506
MluCI	AATT	8 cut(s)	9, 40, 138, 407, 493, 757, 901, 1035
MmeI	TCCRAC	3 cut(s)	77, 525, 611
MseI	TTAA	1 cut(s)	894
MslI	CAYNNNNRTG	1 cut(s)	936
MspI	CCGG	3 cut(s)	554, 992, 1014
MspR9I	CCNGG	4 cut(s)	419, 769, 992, 993
MvaI	CCWGG	2 cut(s)	419, 769
MwoI	GCNNNNNNNGC	4 cut(s)	280, 283, 433, 857
NciI	CCSGG	2 cut(s)	992, 993
NcoI	CCATGG	1 cut(s)	16
NdeII	GATC	3 cut(s)	313, 448, 1044
NlaIII	CATG	3 cut(s)	20, 455, 1062
NlaIV	GGNNCC	2 cut(s)	378, 520
NmuCI	GTSAC	1 cut(s)	204
NspV	TTCGAA	1 cut(s)	956
PcsI	WCGNNNNNNNCGW	1 cut(s)	497
PfeI	GAWTC	7 cut(s)	237, 302, 329, 550, 572, 812, 987
PinAI	ACCGGT	1 cut(s)	1013
PkrI	GCNGC	3 cut(s)	27, 276, 285
Psp6I	CCWGG	2 cut(s)	417, 767
PspEI	GGTNACC	1 cut(s)	204
PspGI	CCWGG	2 cut(s)	417, 767
PspN4I	GGNNCC	2 cut(s)	378, 520
PspPI	GGNCC	1 cut(s)	307
RseI	CAYNNNNRTG	1 cut(s)	936
SaqAI	TTAA	1 cut(s)	894
SatI	GCNGC	3 cut(s)	26, 275, 284
Sau3AI	GATC	3 cut(s)	313, 448, 1044
Sau96I	GGNCC	1 cut(s)	307
ScrFI	CCNGG	4 cut(s)	419, 769, 992, 993
SduI	GDGCHC	1 cut(s)	506
SfaNI	GCATC	3 cut(s)	179, 754, 838
SfuI	TTCGAA	1 cut(s)	956
SmaI	CCCGGG	1 cut(s)	993
SmiMI	CAYNNNNRTG	1 cut(s)	936
Sse9I	AATT	8 cut(s)	9, 40, 138, 407, 493, 757, 901, 1035
SsiI	CCGC	1 cut(s)	627
SspMI	CTAG	2 cut(s)	6, 576
StyD4I	CCNGG	4 cut(s)	417, 767, 990, 991
StyI	CCWWGG	1 cut(s)	16
TaaI	ACNGT	1 cut(s)	845
TaiI	ACGT	2 cut(s)	503, 618
TaqI	TCGA	5 cut(s)	491, 497, 561, 623, 956
TasI	AATT	8 cut(s)	9, 40, 138, 407, 493, 757, 901, 1035
TfiI	GAWTC	7 cut(s)	237, 302, 329, 550, 572, 812, 987
Tru1I	TTAA	1 cut(s)	894
Tru9I	TTAA	1 cut(s)	894
TscAI	CASTG	1 cut(s)	123
TseFI	GTSAC	1 cut(s)	204
TseI	GCWGC	3 cut(s)	25, 274, 283
Tsp45I	GTSAC	1 cut(s)	204
TspDTI	ATGAA	3 cut(s)	84, 726, 735
TspMI	CCCGGG	1 cut(s)	991
TspRI	CASTG	1 cut(s)	123
XapI	RAATTY	4 cut(s)	9, 407, 493, 901
XbaI	TCTAGA	1 cut(s)	5
XmaI	CCCGGG	1 cut(s)	991
XspI	CTAG	2 cut(s)	6, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.