FvH4_5g05720

FAS-associated factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0012615
Physical Location & Seq
Reverse (-)
3398203 .. 3401075
2873 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g05720.t2

Sequence Viewer

Length: 1164 bp
ATGTCATCAACAATGAGGGAGGACATAAGATCATCTGGAGAGGCCTCTCGCAATGGGATTGTTCGCCGGATGGTGAGCCTTCCCAGAAGCCTGATAGGTGGATTTTCAAGAGCAATGGGTCAGGGTAGAGGCCGCATAGGAATAGGAAGAAGGACTCAAACTCTACCATCAAACTTTCAAATGCAAAATCCAGAAGAATCCCTAATTGTTCCTGAAACATTCACCTTTCTACATAGCTTTGAGCAGCATTATGGTACCATGCATCCATTCTTTTATGCTTGCCAGTTTATGGAGGCCCTGAAGATTGCAAAGGATGAGCACAAGTTCTTGTTCATGTATCTGCACTCACCAGAACATCCCTTCACACCCTCTTTCTGTAGGGAGACACTGTCTTCGGAGCTGGTGGTGCAGTTTCTTGATGCTAACTTTGTTTCTTGGGCAGCACTCGCCGATAAAGAGGAAGGTCTACAAATGGCTGCAACACTTAACCCTTCTTGCTTTCCGTTCTGCGCTATTATAGCTCCTGCTCCTAGTGATAGCATAGCAGTCCTGCAGCAGATGGAAGGGCCGATTTCGCCAACTGAGCTTATAGGGATTCTGCAGAGGACAGTGGAGGAACAAGGGTTGGCTTTCCGCAGTCAGAGAGCCAAGCAGGCAGAACAAAATCAAAAAATAATTGCAGACCGTCGTCTAAGAGATGAACAAGATGCAGCATATCTAGCTGCTCTACACATAGACAAGGAAAAGGAGAAGCTGAAGAGTTCAGCTTTAGCAGACAGAATTCAGAAGCAAGTACAAGTACATAATAAAGCAAATGCTGAGAAGGTTGAGAATCATTTCAACAACACAAATACTGGAAAAATGAAGGCTTCTACTACCAGAGAAACTCAATACAAGGAGTTTGGTAATAGGGGGAAAGATCCTCAGGCTGCACAGATACTGATAAGGTTTCCGAACGGCGAAAGAAGAGAGCAATGCTTCTCAAGCACAGACAAAGTGCAGGCAATTTACAGATACATAGATTCATTAGGTTTACCTGTCATTGGAAACTACAGATTGATATCAAGCTTCCCCAGAAAAGTCTATGGGGTGGACCAGATGGGGATGACACTCAAAGATGCTGGTCTGCATCCAAGAGCAAGCCTATTTCTTGAACTTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UBX

Protein Analysis

388

Amino Acids

43.73

Weight (kDa)

8.85

Isoelectric Point (pI)

48.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF1 PF21021 76 - 147 6e-12 Fas-associated factor 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012615)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g05720 FvH4_5g05720 FvH4_5g05720
malus_domestica MD06G1170500.v1.1 MD14G1176300.v1.1
prunus_persica Prupe.5G170100_v2.0.a1
pyrus_communis pycom06g15190 pycom14g14720
rosa_chinensis RchiOBHm_Chr7g0193081
rosa_laevigata RLG00000004296
rosa_multiflora Rmu_ssc0000002.1_g000009
rosa_roxburghii Rroxscaffold_3G00262380
rosa_rugosa Rorug07G0007500
rosa_samantha Rh7AG132700 Rh7BG133600 Rh7CG136700 Rh7DG134600
rosa_wichuraiana Rw0G015840 Rw7G011340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 254
AccB1I GGYRCC 1 cut(s) 254
AccB7I CCANNNNNTGG 1 cut(s) 289
AccI GTMKAC 1 cut(s) 466
AciI CCGC 2 cut(s) 133, 634
AclWI GGATC 1 cut(s) 914
AcsI RAATTY 1 cut(s) 780
AcuI CTGAAG 2 cut(s) 320, 776
AfaI GTAC 3 cut(s) 256, 795, 801
AfiI CCNNNNNNNGG 2 cut(s) 289, 1043
AgsI TTSAA 4 cut(s) 108, 179, 841, 1154
AluBI AGCT 8 cut(s) 237, 400, 521, 586, 722, 754, 767, 1068
AluI AGCT 8 cut(s) 237, 400, 521, 586, 722, 754, 767, 1068
Alw21I GWGCWC 1 cut(s) 321
Alw26I GTCTC 1 cut(s) 377
AlwI GGATC 1 cut(s) 914
AlwNI CAGNNNCTG 1 cut(s) 940
AoxI GGCC 4 cut(s) 42, 130, 294, 566
ApeKI GCWGC 7 cut(s) 244, 440, 476, 553, 710, 722, 929
ApoI RAATTY 1 cut(s) 780
ArsI GACNNNNNNTTYG 2 cut(s) 376, 408
Asp700I GAANNNNTTC 1 cut(s) 836
Asp718I GGTACC 1 cut(s) 254
AspLEI GCGC 1 cut(s) 512
AspS9I GGNCC 3 cut(s) 295, 566, 1093
AsuHPI GGTGA 3 cut(s) 85, 214, 339
AvaII GGWCC 1 cut(s) 1093
AxyI CCTNAGG 1 cut(s) 924
BanI GGYRCC 1 cut(s) 254
BbsI GAAGAC 1 cut(s) 384
Bbv12I GWGCWC 1 cut(s) 321
BbvI GCAGC 7 cut(s) 256, 452, 463, 565, 709, 722, 916
BccI CCATC 4 cut(s) 64, 175, 553, 1093
BceAI ACGGC 1 cut(s) 973
BcoDI GTCTC 1 cut(s) 377
BfaI CTAG 2 cut(s) 531, 719
BfmI CTRYAG 4 cut(s) 376, 551, 599, 1051
BglI GCCNNNNNGGC 1 cut(s) 653
BisI GCNGC 8 cut(s) 133, 245, 441, 477, 554, 711, 723, 930
BlsI GCNGC 8 cut(s) 134, 246, 442, 478, 555, 712, 724, 931
Bme18I GGWCC 1 cut(s) 1093
BmgT120I GGNCC 3 cut(s) 295, 566, 1093
BmiI GGNNCC 1 cut(s) 256
BmsI GCATC 5 cut(s) 271, 409, 697, 1108, 1138
BoxI GACNNNNGTC 1 cut(s) 687
BpiI GAAGAC 1 cut(s) 384
BpmI CTGGAG 1 cut(s) 57
BpuEI CTTGAG 1 cut(s) 967
BsaBI GATNNNNATC 1 cut(s) 1060
BsaXI ACNNNNNCTCC 2 cut(s) 374, 404
Bsc4I CCNNNNNNNGG 2 cut(s) 289, 1043
Bse1I ACTGG 2 cut(s) 283, 859
Bse21I CCTNAGG 1 cut(s) 924
Bse3DI GCAATG 3 cut(s) 58, 120, 980
Bse8I GATNNNNATC 1 cut(s) 1060
BseGI GGATG 6 cut(s) 75, 262, 319, 355, 1110, 1129
BseJI GATNNNNATC 1 cut(s) 1060
BseLI CCNNNNNNNGG 2 cut(s) 289, 1043
BseMI GCAATG 3 cut(s) 58, 120, 980
BseMII CTCAG 3 cut(s) 573, 810, 938
BseNI ACTGG 2 cut(s) 283, 859
BseXI GCAGC 7 cut(s) 256, 452, 463, 565, 709, 722, 916
BsgI GTGCAG 4 cut(s) 326, 428, 915, 1019
BshFI GGCC 4 cut(s) 44, 132, 296, 568
BshNI GGYRCC 1 cut(s) 254
BsiHKAI GWGCWC 1 cut(s) 321
BsiSI CCGG 1 cut(s) 67
BslI CCNNNNNNNGG 2 cut(s) 289, 1043
BsmAI GTCTC 1 cut(s) 377
BsnI GGCC 4 cut(s) 44, 132, 296, 568
Bsp1286I GDGCHC 1 cut(s) 321
Bsp143I GATC 2 cut(s) 29, 919
BspACI CCGC 2 cut(s) 133, 634
BspANI GGCC 4 cut(s) 44, 132, 296, 568
BspCNI CTCAG 3 cut(s) 574, 811, 937
BspLI GGNNCC 1 cut(s) 256
BspMAI CTGCAG 2 cut(s) 555, 603
BspPI GGATC 1 cut(s) 914
BspT107I GGYRCC 1 cut(s) 254
BsrDI GCAATG 3 cut(s) 58, 120, 980
BsrI ACTGG 2 cut(s) 283, 859
BssMI GATC 2 cut(s) 29, 919
Bst4CI ACNGT 3 cut(s) 390, 610, 686
Bst6I CTCTTC 2 cut(s) 752, 961
BstC8I GCNNGC 4 cut(s) 280, 654, 1002, 1141
BstDEI CTNAG 4 cut(s) 582, 692, 819, 924
BstF5I GGATG 6 cut(s) 75, 262, 319, 355, 1110, 1129
BstHHI GCGC 1 cut(s) 512
BstKTI GATC 2 cut(s) 32, 922
BstMAI GTCTC 1 cut(s) 377
BstMBI GATC 2 cut(s) 29, 919
BstMWI GCNNNNNNNGC 8 cut(s) 406, 446, 518, 574, 583, 653, 719, 984
BstPAI GACNNNNGTC 1 cut(s) 687
BstSFI CTRYAG 4 cut(s) 376, 551, 599, 1051
BstV1I GCAGC 7 cut(s) 256, 452, 463, 565, 709, 722, 916
BstV2I GAAGAC 1 cut(s) 384
BstX2I RGATCY 1 cut(s) 919
BstYI RGATCY 1 cut(s) 919
Bsu36I CCTNAGG 1 cut(s) 924
BsuRI GGCC 4 cut(s) 44, 132, 296, 568
BtsCI GGATG 6 cut(s) 75, 262, 319, 355, 1110, 1129
BtsIMutI CAGTG 2 cut(s) 386, 615
Cac8I GCNNGC 4 cut(s) 280, 654, 1002, 1141
CaiI CAGNNNCTG 1 cut(s) 940
CfoI GCGC 1 cut(s) 512
Cfr13I GGNCC 3 cut(s) 295, 566, 1093
Csp6I GTAC 3 cut(s) 255, 794, 800
CviAII CATG 2 cut(s) 259, 334
CviQI GTAC 3 cut(s) 255, 794, 800
DdeI CTNAG 4 cut(s) 582, 692, 819, 924
DpnI GATC 2 cut(s) 31, 921
DpnII GATC 2 cut(s) 29, 919
Eam1104I CTCTTC 2 cut(s) 752, 961
EarI CTCTTC 2 cut(s) 752, 961
Eco147I AGGCCT 1 cut(s) 44
Eco32I GATATC 1 cut(s) 1062
Eco47I GGWCC 1 cut(s) 1093
Eco57I CTGAAG 2 cut(s) 320, 776
Eco81I CCTNAGG 1 cut(s) 924
EcoO109I RGGNCCY 1 cut(s) 295
EcoRI GAATTC 1 cut(s) 780
EcoRV GATATC 1 cut(s) 1062
EcoT22I ATGCAT 1 cut(s) 264
FaeI CATG 2 cut(s) 262, 337
FatI CATG 2 cut(s) 258, 333
FblI GTMKAC 1 cut(s) 466
Fnu4HI GCNGC 8 cut(s) 133, 245, 441, 477, 554, 711, 723, 930
FokI GGATG 6 cut(s) 82, 249, 326, 342, 1116, 1117
Fsp4HI GCNGC 8 cut(s) 133, 245, 441, 477, 554, 711, 723, 930
FspBI CTAG 2 cut(s) 531, 719
GlaI GCGC 1 cut(s) 511
GluI GCNGC 8 cut(s) 133, 245, 441, 477, 554, 711, 723, 930
GsuI CTGGAG 1 cut(s) 57
HaeIII GGCC 4 cut(s) 44, 132, 296, 568
HapII CCGG 1 cut(s) 67
HhaI GCGC 1 cut(s) 512
Hin1II CATG 2 cut(s) 262, 337
Hin6I GCGC 1 cut(s) 510
HinP1I GCGC 1 cut(s) 510
HindIII AAGCTT 1 cut(s) 1066
HinfI GANTC 5 cut(s) 154, 197, 595, 832, 1022
HpaII CCGG 1 cut(s) 67
HphI GGTGA 3 cut(s) 85, 214, 339
Hpy166II GTNNAC 3 cut(s) 467, 1034, 1093
Hpy188I TCNGA 4 cut(s) 397, 642, 786, 954
Hpy188III TCNNGA 6 cut(s) 36, 108, 191, 212, 416, 1151
Hpy8I GTNNAC 3 cut(s) 467, 1034, 1093
Hpy99I CGWCG 1 cut(s) 690
HpyAV CCTTC 8 cut(s) 89, 144, 370, 455, 501, 557, 817, 859
HpyCH4III ACNGT 3 cut(s) 390, 610, 686
HpyF10VI GCNNNNNNNGC 8 cut(s) 406, 446, 518, 574, 583, 653, 719, 984
HpyF3I CTNAG 4 cut(s) 582, 692, 819, 924
Hsp92II CATG 2 cut(s) 262, 337
HspAI GCGC 1 cut(s) 510
KpnI GGTACC 1 cut(s) 258
Kzo9I GATC 2 cut(s) 29, 919
LmnI GCTCC 3 cut(s) 397, 526, 532
Lsp1109I GCAGC 7 cut(s) 256, 452, 463, 565, 709, 722, 916
LweI GCATC 5 cut(s) 271, 409, 697, 1108, 1138
MaeI CTAG 2 cut(s) 531, 719
MalI GATC 2 cut(s) 31, 921
MboI GATC 2 cut(s) 29, 919
MboII GAAGA 6 cut(s) 159, 206, 313, 384, 769, 978
MflI RGATCY 1 cut(s) 919
MhlI GDGCHC 1 cut(s) 321
MluCI AATT 4 cut(s) 204, 675, 780, 1005
MlyI GAGTC 1 cut(s) 148
Mph1103I ATGCAT 1 cut(s) 264
MroXI GAANNNNTTC 1 cut(s) 836
MseI TTAA 1 cut(s) 486
MspI CCGG 1 cut(s) 67
MwoI GCNNNNNNNGC 8 cut(s) 406, 446, 518, 574, 583, 653, 719, 984
NdeII GATC 2 cut(s) 29, 919
NlaIII CATG 2 cut(s) 262, 337
NlaIV GGNNCC 1 cut(s) 256
NsiI ATGCAT 1 cut(s) 264
PceI AGGCCT 1 cut(s) 44
PdmI GAANNNNTTC 1 cut(s) 836
PfeI GAWTC 4 cut(s) 197, 595, 832, 1022
PflFI GACNNNGTC 1 cut(s) 388
PflMI CCANNNNNTGG 1 cut(s) 289
PkrI GCNGC 8 cut(s) 134, 246, 442, 478, 555, 712, 724, 931
PleI GAGTC 1 cut(s) 148
PpsI GAGTC 1 cut(s) 148
PshAI GACNNNNGTC 1 cut(s) 687
PspN4I GGNNCC 1 cut(s) 256
PspPI GGNCC 3 cut(s) 295, 566, 1093
PstI CTGCAG 2 cut(s) 555, 603
PstNI CAGNNNCTG 1 cut(s) 940
PsuI RGATCY 1 cut(s) 919
PsyI GACNNNGTC 1 cut(s) 388
RsaI GTAC 3 cut(s) 256, 795, 801
RsaNI GTAC 3 cut(s) 255, 794, 800
SaqAI TTAA 1 cut(s) 486
SatI GCNGC 8 cut(s) 133, 245, 441, 477, 554, 711, 723, 930
Sau3AI GATC 2 cut(s) 29, 919
Sau96I GGNCC 3 cut(s) 295, 566, 1093
SchI GAGTC 1 cut(s) 148
SduI GDGCHC 1 cut(s) 321
SfaNI GCATC 5 cut(s) 271, 409, 697, 1108, 1138
SfcI CTRYAG 4 cut(s) 376, 551, 599, 1051
SinI GGWCC 1 cut(s) 1093
SmlI CTYRAG 1 cut(s) 982
SmoI CTYRAG 1 cut(s) 982
Sse9I AATT 4 cut(s) 204, 675, 780, 1005
SseBI AGGCCT 1 cut(s) 44
SsiI CCGC 2 cut(s) 133, 634
SspMI CTAG 2 cut(s) 531, 719
StuI AGGCCT 1 cut(s) 44
TaaI ACNGT 3 cut(s) 390, 610, 686
TasI AATT 4 cut(s) 204, 675, 780, 1005
TatI WGTACW 2 cut(s) 793, 799
TauI GCSGC 1 cut(s) 135
TfiI GAWTC 4 cut(s) 197, 595, 832, 1022
Tru1I TTAA 1 cut(s) 486
Tru9I TTAA 1 cut(s) 486
TscAI CASTG 2 cut(s) 393, 615
TseI GCWGC 7 cut(s) 244, 440, 476, 553, 710, 722, 929
TspDTI ATGAA 4 cut(s) 322, 714, 878, 1014
TspGWI ACGGA 1 cut(s) 492
TspRI CASTG 2 cut(s) 393, 615
Tth111I GACNNNGTC 1 cut(s) 388
Van91I CCANNNNNTGG 1 cut(s) 289
VpaK11BI GGWCC 1 cut(s) 1093
XapI RAATTY 1 cut(s) 780
XmiI GTMKAC 1 cut(s) 466
XmnI GAANNNNTTC 1 cut(s) 836
XspI CTAG 2 cut(s) 531, 719
Zsp2I ATGCAT 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.