Rw7G011340

FAS-associated factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0012615
Physical Location & Seq
Forward (+)
10622760 .. 10624505
1746 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G011340.1

Sequence Viewer

Length: 1086 bp
ATGTCATCAACAATGAGGGATGACATAAGATCATCTGGAGAGGCCTCTTGCAATGGTATTGTTCGCCGGATGGTGAGGCTCCCCAGAAGCCTGATTGGTGGATTTTCAAGAGCAATGGGTCATGGTAGAGGCCGTATAGGAATAGGAGGAAGAAGGACTCAAAATCTACCATCAAACTTCCAAATGCAGAATACAGAAGAACCCCTAATTGTTCCTGAAGCATTTGCCTTTCTACATGGCTTTGAGCAGCATTATGGTACCATGCATCCATTCTTTTATGCTTGCCAGTTTATGGAGGCCTTAAAGATTGCGAAGGATGAGCACAAGTTCTTGTTCATGTATCTCCACTCACCAGAACACCCCTTCACACCCTCTTTCTGTAGGGAGACACTGTCTTCAGAGCTGGTGCAGAGCTGGTGGTGCAGTTTCTTGATGCTAACTTTGTTTCTTGGGCAGCACTCACTGATAGAGAGGAAGATGGAAGGGCCGATTTCTCCAACTGAGCTTATGGGGATTCTGCAGAGGACTGTGGAGGAACAAGGCTTGGCTTTCCACAGTCAAAAGGCCAAGCAGGCAGAACAGAATCAAAAGATGATAGCAGACCATCGTCTAAGAGACGAACAAGATGCAGCATATCTTGCAGCTCTACAAATAGACAAGGAAAAGGAGAAGCTGAAGAGTTCAGCTTTAGCAGAGAGAATTCAGAAGCCAGTACAAGTCCCTAAGAAAGCAAATTCTGAGAAGCTTGAGAATCATTCTAACAAAAAAAATAATGGAAAAATGAAAGAGGCTTCTGCTACCAGAGATTCTCAATACAAGGAGGTTGCTAATAGGGGGAAAGATCCTCAGGCTGCACAGATACTGATAAGGTTTCCGAACGGTGAAAGAAGAGAGCAATGCTTCTTATGCACAGACAAAGTGCAGGCAATTTACAGATACATAGATTCATTAGGTCTACCTGGTGTAGGAAACTACAGATTGATATCAAGCTTCCCAAGAAGAGTCTATGGGGTTGACCAGATGGGGATGATGCTCAAAGATGCTGGTCTGCATCCAAGAGCAAGCCTATTTCTTGAACTTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UBX

Protein Analysis

361

Amino Acids

41.17

Weight (kDa)

9.27

Isoelectric Point (pI)

48.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF1 PF21021 77 - 138 2.9e-06 Fas-associated factor 1
UBX PF00789 281 - 359 7.1e-19 UBX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012615)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g05720 FvH4_5g05720 FvH4_5g05720
malus_domestica MD06G1170500.v1.1 MD14G1176300.v1.1
prunus_persica Prupe.5G170100_v2.0.a1
pyrus_communis pycom06g15190 pycom14g14720
rosa_chinensis RchiOBHm_Chr7g0193081
rosa_laevigata RLG00000004296
rosa_multiflora Rmu_ssc0000002.1_g000009
rosa_roxburghii Rroxscaffold_3G00262380
rosa_rugosa Rorug07G0007500
rosa_samantha Rh7AG132700 Rh7BG133600 Rh7CG136700 Rh7DG134600
rosa_wichuraiana Rw0G015840 Rw7G011340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 257
AccB1I GGYRCC 1 cut(s) 257
AccB7I CCANNNNNTGG 1 cut(s) 292
AccI GTMKAC 1 cut(s) 955
AclWI GGATC 1 cut(s) 836
AcsI RAATTY 2 cut(s) 699, 733
AcuI CTGAAG 3 cut(s) 237, 381, 695
AfaI GTAC 2 cut(s) 259, 714
AfiI CCNNNNNNNGG 2 cut(s) 292, 965
AgsI TTSAA 2 cut(s) 108, 1076
AjnI CCWGG 1 cut(s) 958
AluBI AGCT 8 cut(s) 403, 414, 505, 644, 673, 686, 745, 990
AluI AGCT 8 cut(s) 403, 414, 505, 644, 673, 686, 745, 990
Alw21I GWGCWC 1 cut(s) 324
Alw26I GTCTC 2 cut(s) 380, 609
AlwI GGATC 1 cut(s) 836
AlwNI CAGNNNCTG 1 cut(s) 862
AoxI GGCC 5 cut(s) 42, 130, 297, 485, 564
ApeKI GCWGC 5 cut(s) 247, 454, 629, 641, 851
ApoI RAATTY 2 cut(s) 699, 733
Asp718I GGTACC 1 cut(s) 257
AspS9I GGNCC 1 cut(s) 485
AsuHPI GGTGA 3 cut(s) 85, 342, 893
AxyI CCTNAGG 1 cut(s) 846
BanI GGYRCC 1 cut(s) 257
BbsI GAAGAC 1 cut(s) 387
Bbv12I GWGCWC 1 cut(s) 324
BbvI GCAGC 5 cut(s) 259, 466, 641, 653, 838
BccI CCATC 5 cut(s) 64, 178, 472, 612, 1015
BceAI ACGGC 1 cut(s) 117
BcgI CGANNNNNNTGC 2 cut(s) 608, 642
BciT130I CCWGG 1 cut(s) 960
BcoDI GTCTC 2 cut(s) 380, 609
BfmI CTRYAG 3 cut(s) 379, 518, 973
BglI GCCNNNNNGGC 1 cut(s) 572
BisI GCNGC 5 cut(s) 248, 455, 630, 642, 852
BlsI GCNGC 5 cut(s) 249, 456, 631, 643, 853
Bme1390I CCNGG 1 cut(s) 960
BmgT120I GGNCC 1 cut(s) 485
BmiI GGNNCC 2 cut(s) 80, 259
BmrFI CCNGG 1 cut(s) 960
BmsI GCATC 6 cut(s) 274, 423, 616, 1020, 1030, 1060
BoxI GACNNNNGTC 1 cut(s) 606
BpiI GAAGAC 1 cut(s) 387
BpmI CTGGAG 1 cut(s) 57
BpuEI CTTGAG 1 cut(s) 767
BsaBI GATNNNNATC 1 cut(s) 982
BsaXI ACNNNNNCTCC 2 cut(s) 377, 407
Bsc4I CCNNNNNNNGG 2 cut(s) 292, 965
Bse1I ACTGG 2 cut(s) 286, 710
Bse21I CCTNAGG 1 cut(s) 846
Bse3DI GCAATG 3 cut(s) 58, 120, 902
Bse8I GATNNNNATC 1 cut(s) 982
BseBI CCWGG 1 cut(s) 960
BseGI GGATG 6 cut(s) 25, 75, 265, 322, 1032, 1051
BseJI GATNNNNATC 1 cut(s) 982
BseLI CCNNNNNNNGG 2 cut(s) 292, 965
BseMI GCAATG 3 cut(s) 58, 120, 902
BseMII CTCAG 3 cut(s) 492, 729, 860
BseNI ACTGG 2 cut(s) 286, 710
BseXI GCAGC 5 cut(s) 259, 466, 641, 653, 838
BsgI GTGCAG 4 cut(s) 428, 442, 837, 941
BshFI GGCC 5 cut(s) 44, 132, 299, 487, 566
BshNI GGYRCC 1 cut(s) 257
BsiHKAI GWGCWC 1 cut(s) 324
BsiSI CCGG 1 cut(s) 67
BslFI GGGAC 1 cut(s) 704
BslI CCNNNNNNNGG 2 cut(s) 292, 965
BsmAI GTCTC 2 cut(s) 380, 609
BsmBI CGTCTC 1 cut(s) 609
BsmFI GGGAC 1 cut(s) 704
BsnI GGCC 5 cut(s) 44, 132, 299, 487, 566
Bsp1286I GDGCHC 1 cut(s) 324
Bsp143I GATC 2 cut(s) 29, 841
BspANI GGCC 5 cut(s) 44, 132, 299, 487, 566
BspCNI CTCAG 3 cut(s) 493, 730, 859
BspLI GGNNCC 2 cut(s) 80, 259
BspMAI CTGCAG 1 cut(s) 522
BspPI GGATC 1 cut(s) 836
BspT107I GGYRCC 1 cut(s) 257
BsrDI GCAATG 3 cut(s) 58, 120, 902
BsrI ACTGG 2 cut(s) 286, 710
BssMI GATC 2 cut(s) 29, 841
Bst2UI CCWGG 1 cut(s) 960
Bst4CI ACNGT 4 cut(s) 393, 529, 557, 881
Bst6I CTCTTC 3 cut(s) 671, 883, 994
BstAPI GCANNNNNTGC 1 cut(s) 638
BstC8I GCNNGC 4 cut(s) 283, 573, 924, 1063
BstDEI CTNAG 5 cut(s) 501, 611, 723, 738, 846
BstENI CCTNNNNNAGG 1 cut(s) 963
BstF5I GGATG 6 cut(s) 25, 75, 265, 322, 1032, 1051
BstKTI GATC 2 cut(s) 32, 844
BstMAI GTCTC 2 cut(s) 380, 609
BstMBI GATC 2 cut(s) 29, 841
BstMWI GCNNNNNNNGC 4 cut(s) 420, 572, 638, 906
BstNI CCWGG 1 cut(s) 960
BstPAI GACNNNNGTC 1 cut(s) 606
BstSCI CCNGG 1 cut(s) 958
BstSFI CTRYAG 3 cut(s) 379, 518, 973
BstV1I GCAGC 5 cut(s) 259, 466, 641, 653, 838
BstV2I GAAGAC 1 cut(s) 387
BstX2I RGATCY 1 cut(s) 841
BstYI RGATCY 1 cut(s) 841
Bsu36I CCTNAGG 1 cut(s) 846
BsuRI GGCC 5 cut(s) 44, 132, 299, 487, 566
BtsCI GGATG 6 cut(s) 25, 75, 265, 322, 1032, 1051
BtsIMutI CAGTG 2 cut(s) 389, 461
Cac8I GCNNGC 4 cut(s) 283, 573, 924, 1063
CaiI CAGNNNCTG 1 cut(s) 862
Cfr13I GGNCC 1 cut(s) 485
CsiI ACCWGGT 1 cut(s) 958
Csp6I GTAC 2 cut(s) 258, 713
CviAII CATG 4 cut(s) 122, 236, 262, 337
CviQI GTAC 2 cut(s) 258, 713
DdeI CTNAG 5 cut(s) 501, 611, 723, 738, 846
DpnI GATC 2 cut(s) 31, 843
DpnII GATC 2 cut(s) 29, 841
Eam1104I CTCTTC 3 cut(s) 671, 883, 994
EarI CTCTTC 3 cut(s) 671, 883, 994
Eco147I AGGCCT 2 cut(s) 44, 299
Eco32I GATATC 1 cut(s) 984
Eco57I CTGAAG 3 cut(s) 237, 381, 695
Eco81I CCTNAGG 1 cut(s) 846
EcoNI CCTNNNNNAGG 1 cut(s) 963
EcoRI GAATTC 1 cut(s) 699
EcoRII CCWGG 1 cut(s) 958
EcoRV GATATC 1 cut(s) 984
EcoT22I ATGCAT 1 cut(s) 267
Esp3I CGTCTC 1 cut(s) 609
FaeI CATG 4 cut(s) 125, 239, 265, 340
FaqI GGGAC 1 cut(s) 704
FatI CATG 4 cut(s) 121, 235, 261, 336
FblI GTMKAC 1 cut(s) 955
Fnu4HI GCNGC 5 cut(s) 248, 455, 630, 642, 852
FokI GGATG 6 cut(s) 32, 82, 252, 329, 1038, 1039
Fsp4HI GCNGC 5 cut(s) 248, 455, 630, 642, 852
GluI GCNGC 5 cut(s) 248, 455, 630, 642, 852
GsuI CTGGAG 1 cut(s) 57
HaeIII GGCC 5 cut(s) 44, 132, 299, 487, 566
HapII CCGG 1 cut(s) 67
Hin1II CATG 4 cut(s) 125, 239, 265, 340
HincII GTYRAC 1 cut(s) 1015
HindII GTYRAC 1 cut(s) 1015
HindIII AAGCTT 2 cut(s) 743, 988
HinfI GANTC 7 cut(s) 157, 514, 583, 751, 806, 944, 1002
HpaII CCGG 1 cut(s) 67
HphI GGTGA 3 cut(s) 85, 342, 893
Hpy166II GTNNAC 2 cut(s) 956, 1015
Hpy188I TCNGA 4 cut(s) 400, 705, 739, 876
Hpy188III TCNNGA 5 cut(s) 36, 108, 215, 430, 1073
Hpy8I GTNNAC 2 cut(s) 956, 1015
HpyAV CCTTC 4 cut(s) 147, 307, 373, 476
HpyCH4III ACNGT 4 cut(s) 393, 529, 557, 881
HpyF10VI GCNNNNNNNGC 4 cut(s) 420, 572, 638, 906
HpyF3I CTNAG 5 cut(s) 501, 611, 723, 738, 846
Hsp92II CATG 4 cut(s) 125, 239, 265, 340
KpnI GGTACC 1 cut(s) 261
Kzo9I GATC 2 cut(s) 29, 841
LmnI GCTCC 1 cut(s) 84
Lsp1109I GCAGC 5 cut(s) 259, 466, 641, 653, 838
LweI GCATC 6 cut(s) 274, 423, 616, 1020, 1030, 1060
MabI ACCWGGT 1 cut(s) 958
MalI GATC 2 cut(s) 31, 843
MboI GATC 2 cut(s) 29, 841
MboII GAAGA 7 cut(s) 162, 209, 387, 487, 688, 900, 1011
MflI RGATCY 1 cut(s) 841
MhlI GDGCHC 1 cut(s) 324
MluCI AATT 4 cut(s) 207, 699, 733, 927
MlyI GAGTC 2 cut(s) 151, 1011
MmeI TCCRAC 1 cut(s) 521
Mph1103I ATGCAT 1 cut(s) 267
MseI TTAA 1 cut(s) 302
MspI CCGG 1 cut(s) 67
MspR9I CCNGG 1 cut(s) 960
MvaI CCWGG 1 cut(s) 960
MwoI GCNNNNNNNGC 4 cut(s) 420, 572, 638, 906
NdeII GATC 2 cut(s) 29, 841
NlaIII CATG 4 cut(s) 125, 239, 265, 340
NlaIV GGNNCC 2 cut(s) 80, 259
NsiI ATGCAT 1 cut(s) 267
PceI AGGCCT 2 cut(s) 44, 299
PfeI GAWTC 5 cut(s) 514, 583, 751, 806, 944
PflFI GACNNNGTC 1 cut(s) 391
PflMI CCANNNNNTGG 1 cut(s) 292
PkrI GCNGC 5 cut(s) 249, 456, 631, 643, 853
PleI GAGTC 2 cut(s) 151, 1010
PpsI GAGTC 2 cut(s) 151, 1010
PshAI GACNNNNGTC 1 cut(s) 606
Psp6I CCWGG 1 cut(s) 958
PspGI CCWGG 1 cut(s) 958
PspN4I GGNNCC 2 cut(s) 80, 259
PspPI GGNCC 1 cut(s) 485
PstI CTGCAG 1 cut(s) 522
PstNI CAGNNNCTG 1 cut(s) 862
PsuI RGATCY 1 cut(s) 841
PsyI GACNNNGTC 1 cut(s) 391
RsaI GTAC 2 cut(s) 259, 714
RsaNI GTAC 2 cut(s) 258, 713
SaqAI TTAA 1 cut(s) 302
SatI GCNGC 5 cut(s) 248, 455, 630, 642, 852
Sau3AI GATC 2 cut(s) 29, 841
Sau96I GGNCC 1 cut(s) 485
SchI GAGTC 2 cut(s) 151, 1011
ScrFI CCNGG 1 cut(s) 960
SduI GDGCHC 1 cut(s) 324
SexAI ACCWGGT 1 cut(s) 958
SfaNI GCATC 6 cut(s) 274, 423, 616, 1020, 1030, 1060
SfcI CTRYAG 3 cut(s) 379, 518, 973
SmlI CTYRAG 1 cut(s) 746
SmoI CTYRAG 1 cut(s) 746
Sse9I AATT 4 cut(s) 207, 699, 733, 927
SseBI AGGCCT 2 cut(s) 44, 299
StuI AGGCCT 2 cut(s) 44, 299
StyD4I CCNGG 1 cut(s) 958
TaaI ACNGT 4 cut(s) 393, 529, 557, 881
TasI AATT 4 cut(s) 207, 699, 733, 927
TatI WGTACW 1 cut(s) 712
TfiI GAWTC 5 cut(s) 514, 583, 751, 806, 944
Tru1I TTAA 1 cut(s) 302
Tru9I TTAA 1 cut(s) 302
TscAI CASTG 2 cut(s) 396, 468
TseI GCWGC 5 cut(s) 247, 454, 629, 641, 851
TspDTI ATGAA 3 cut(s) 325, 797, 936
TspRI CASTG 2 cut(s) 396, 468
Tth111I GACNNNGTC 1 cut(s) 391
Van91I CCANNNNNTGG 1 cut(s) 292
XagI CCTNNNNNAGG 1 cut(s) 963
XapI RAATTY 2 cut(s) 699, 733
XmiI GTMKAC 1 cut(s) 955
Zsp2I ATGCAT 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.