Rw0G015840

FAS-associated factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00742
OG0012615
Physical Location & Seq
Reverse (-)
31134 .. 32867
1734 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G015840.1

Sequence Viewer

Length: 1125 bp
ATGTCATCAACAATGAGGGATGACATAAGATCATCTGGAGAGGCCTCTTGCAATGGTATTGTTCGCCGGATGGTGAGGCTCCCCAGAAGCCTGATTGGTGGATTTTCAAGAGCAATGGGTCATGGTAGAGGCCGTATAGGAATAGGAGGAAGAAGGACTCAAAATCTACCATCAAACTTCCAAATGCAGAATCCAGAAGAACCCCTAATTGTTCCTGAAGCATTTGCCTTTCTACATAGCTTTGAGCAGCATTATGGTACCATGCATCCATTCTTTTATGCTTGCCAGTTTATGGAGGCCTTAAAGATTGCGAAGGATGAGCACAAGTTCTTGTTCATGTATCTCCACTCACCAGAACACCCCTTCACACCCTCTTTCTGTAGGGAGACACTGTCTTCAGAGCTGGTGGTGCAGTTTCTTGATGCTAACTTTGTTTCTTGGGCAGCACTCACTGATAGAGAGGAAGGTCTACAAATGGCTGCAACACTTAACCCTTCTTGCTTTCCGTTCTGCGCTATTATAGCTCCTGCTCATAGTGATAGCATAGCAGTCTTGCAGAAGATGGAAGGGCCGATTTCTCCAACTGAGCTTATGGGGATTCTGCAGAGGACTGTGGAGGAACAAGGCTTGGCTTTCCACAGTCAAAAGGCCAAGCAGGCAGAACAGAATCAAAAGATGATAGCAGACCATCGTCTAAGAGACGAACAAGATGCAGCATATCTTGCAGCTCTACAAATAGACAAGGAAAAGGAGAAGCTGAAGAGTTCAGCTTTAGCAGAGAGAGTTCAGAAGCCAGTACAAGTCCCTAAGAAAGCAAATTCTGAGAAGCTTGAGAATCATTCTAACAAAAAAAATAATGGAAAAATGAAAGAGGCTTCTGCTACCAGAGATTCTCAATGCAAGGAGGTTGCTAATAGGGGGAAAGATCCTCAGGCTGCACAGATACTGATAAGGTTTCCGAACGGTGAAAGAAGAGAGCAATGCTTCTTATGTCTACCTGGTATAGGAAACTACAGATTGATATCAAGCTTCCCAAGAAGAGTCTATGGGGTTGACCAGATGGGGATGATGCTCAAAGATGCTGGTCTGCATCCAAGAGCAAGCCTATTTCTTGAACTTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UBX

Protein Analysis

374

Amino Acids

42.1

Weight (kDa)

8.83

Isoelectric Point (pI)

51.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF1 PF21021 77 - 148 9.1e-12 Fas-associated factor 1
UBX PF00789 337 - 372 3.8e-06 UBX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012615)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g05720 FvH4_5g05720 FvH4_5g05720
malus_domestica MD06G1170500.v1.1 MD14G1176300.v1.1
prunus_persica Prupe.5G170100_v2.0.a1
pyrus_communis pycom06g15190 pycom14g14720
rosa_chinensis RchiOBHm_Chr7g0193081
rosa_laevigata RLG00000004296
rosa_multiflora Rmu_ssc0000002.1_g000009
rosa_roxburghii Rroxscaffold_3G00262380
rosa_rugosa Rorug07G0007500
rosa_samantha Rh7AG132700 Rh7BG133600 Rh7CG136700 Rh7DG134600
rosa_wichuraiana Rw0G015840 Rw7G011340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 257
AccB1I GGYRCC 1 cut(s) 257
AccB7I CCANNNNNTGG 1 cut(s) 292
AccI GTMKAC 2 cut(s) 469, 994
AclWI GGATC 1 cut(s) 920
AcsI RAATTY 1 cut(s) 817
AcuI CTGAAG 3 cut(s) 237, 381, 779
AfaI GTAC 2 cut(s) 259, 798
AfiI CCNNNNNNNGG 2 cut(s) 292, 1004
AgsI TTSAA 2 cut(s) 108, 1115
AjnI CCWGG 1 cut(s) 997
AluBI AGCT 9 cut(s) 240, 403, 524, 589, 728, 757, 770, 829, 1029
AluI AGCT 9 cut(s) 240, 403, 524, 589, 728, 757, 770, 829, 1029
Alw21I GWGCWC 1 cut(s) 324
Alw26I GTCTC 2 cut(s) 380, 693
AlwI GGATC 1 cut(s) 920
AlwNI CAGNNNCTG 1 cut(s) 946
AoxI GGCC 5 cut(s) 42, 130, 297, 569, 648
ApeKI GCWGC 6 cut(s) 247, 443, 479, 713, 725, 935
ApoI RAATTY 1 cut(s) 817
Asp718I GGTACC 1 cut(s) 257
AspLEI GCGC 1 cut(s) 515
AspS9I GGNCC 1 cut(s) 569
AsuHPI GGTGA 3 cut(s) 85, 342, 977
AxyI CCTNAGG 1 cut(s) 930
BanI GGYRCC 1 cut(s) 257
BbsI GAAGAC 1 cut(s) 387
Bbv12I GWGCWC 1 cut(s) 324
BbvI GCAGC 6 cut(s) 259, 455, 466, 725, 737, 922
BccI CCATC 5 cut(s) 64, 178, 556, 696, 1054
BceAI ACGGC 1 cut(s) 117
BcgI CGANNNNNNTGC 2 cut(s) 692, 726
BciT130I CCWGG 1 cut(s) 999
BcoDI GTCTC 2 cut(s) 380, 693
BfmI CTRYAG 3 cut(s) 379, 602, 1012
BglI GCCNNNNNGGC 1 cut(s) 656
BisI GCNGC 6 cut(s) 248, 444, 480, 714, 726, 936
BlsI GCNGC 6 cut(s) 249, 445, 481, 715, 727, 937
Bme1390I CCNGG 1 cut(s) 999
BmgT120I GGNCC 1 cut(s) 569
BmiI GGNNCC 2 cut(s) 80, 259
BmrFI CCNGG 1 cut(s) 999
BmsI GCATC 6 cut(s) 274, 412, 700, 1059, 1069, 1099
BoxI GACNNNNGTC 1 cut(s) 690
BpiI GAAGAC 1 cut(s) 387
BpmI CTGGAG 1 cut(s) 57
BpuEI CTTGAG 1 cut(s) 851
BsaBI GATNNNNATC 1 cut(s) 1021
BsaXI ACNNNNNCTCC 2 cut(s) 377, 407
Bsc4I CCNNNNNNNGG 2 cut(s) 292, 1004
Bse1I ACTGG 2 cut(s) 286, 794
Bse21I CCTNAGG 1 cut(s) 930
Bse3DI GCAATG 3 cut(s) 58, 120, 986
Bse8I GATNNNNATC 1 cut(s) 1021
BseBI CCWGG 1 cut(s) 999
BseGI GGATG 6 cut(s) 25, 75, 265, 322, 1071, 1090
BseJI GATNNNNATC 1 cut(s) 1021
BseLI CCNNNNNNNGG 2 cut(s) 292, 1004
BseMI GCAATG 3 cut(s) 58, 120, 986
BseMII CTCAG 3 cut(s) 576, 813, 944
BseNI ACTGG 2 cut(s) 286, 794
BseXI GCAGC 6 cut(s) 259, 455, 466, 725, 737, 922
BsgI GTGCAG 2 cut(s) 431, 921
BshFI GGCC 5 cut(s) 44, 132, 299, 571, 650
BshNI GGYRCC 1 cut(s) 257
BsiHKAI GWGCWC 1 cut(s) 324
BsiSI CCGG 1 cut(s) 67
BslFI GGGAC 1 cut(s) 788
BslI CCNNNNNNNGG 2 cut(s) 292, 1004
BsmAI GTCTC 2 cut(s) 380, 693
BsmBI CGTCTC 1 cut(s) 693
BsmFI GGGAC 1 cut(s) 788
BsnI GGCC 5 cut(s) 44, 132, 299, 571, 650
Bsp1286I GDGCHC 1 cut(s) 324
Bsp143I GATC 2 cut(s) 29, 925
BspANI GGCC 5 cut(s) 44, 132, 299, 571, 650
BspCNI CTCAG 3 cut(s) 577, 814, 943
BspLI GGNNCC 2 cut(s) 80, 259
BspMAI CTGCAG 1 cut(s) 606
BspPI GGATC 1 cut(s) 920
BspT107I GGYRCC 1 cut(s) 257
BsrDI GCAATG 3 cut(s) 58, 120, 986
BsrI ACTGG 2 cut(s) 286, 794
BssMI GATC 2 cut(s) 29, 925
Bst2UI CCWGG 1 cut(s) 999
Bst4CI ACNGT 4 cut(s) 393, 613, 641, 965
Bst6I CTCTTC 3 cut(s) 755, 967, 1033
BstAPI GCANNNNNTGC 1 cut(s) 722
BstC8I GCNNGC 3 cut(s) 283, 657, 1102
BstDEI CTNAG 5 cut(s) 585, 695, 807, 822, 930
BstENI CCTNNNNNAGG 1 cut(s) 1002
BstF5I GGATG 6 cut(s) 25, 75, 265, 322, 1071, 1090
BstHHI GCGC 1 cut(s) 515
BstKTI GATC 2 cut(s) 32, 928
BstMAI GTCTC 2 cut(s) 380, 693
BstMBI GATC 2 cut(s) 29, 925
BstMWI GCNNNNNNNGC 4 cut(s) 409, 521, 656, 722
BstNI CCWGG 1 cut(s) 999
BstPAI GACNNNNGTC 1 cut(s) 690
BstSCI CCNGG 1 cut(s) 997
BstSFI CTRYAG 3 cut(s) 379, 602, 1012
BstV1I GCAGC 6 cut(s) 259, 455, 466, 725, 737, 922
BstV2I GAAGAC 1 cut(s) 387
BstX2I RGATCY 1 cut(s) 925
BstYI RGATCY 1 cut(s) 925
Bsu36I CCTNAGG 1 cut(s) 930
BsuRI GGCC 5 cut(s) 44, 132, 299, 571, 650
BtsCI GGATG 6 cut(s) 25, 75, 265, 322, 1071, 1090
BtsIMutI CAGTG 2 cut(s) 389, 450
Cac8I GCNNGC 3 cut(s) 283, 657, 1102
CaiI CAGNNNCTG 1 cut(s) 946
CfoI GCGC 1 cut(s) 515
Cfr13I GGNCC 1 cut(s) 569
CsiI ACCWGGT 1 cut(s) 997
Csp6I GTAC 2 cut(s) 258, 797
CviAII CATG 3 cut(s) 122, 262, 337
CviQI GTAC 2 cut(s) 258, 797
DdeI CTNAG 5 cut(s) 585, 695, 807, 822, 930
DpnI GATC 2 cut(s) 31, 927
DpnII GATC 2 cut(s) 29, 925
Eam1104I CTCTTC 3 cut(s) 755, 967, 1033
EarI CTCTTC 3 cut(s) 755, 967, 1033
Eco147I AGGCCT 2 cut(s) 44, 299
Eco32I GATATC 1 cut(s) 1023
Eco57I CTGAAG 3 cut(s) 237, 381, 779
Eco81I CCTNAGG 1 cut(s) 930
EcoNI CCTNNNNNAGG 1 cut(s) 1002
EcoRII CCWGG 1 cut(s) 997
EcoRV GATATC 1 cut(s) 1023
EcoT22I ATGCAT 1 cut(s) 267
Esp3I CGTCTC 1 cut(s) 693
FaeI CATG 3 cut(s) 125, 265, 340
FaqI GGGAC 1 cut(s) 788
FatI CATG 3 cut(s) 121, 261, 336
FblI GTMKAC 2 cut(s) 469, 994
Fnu4HI GCNGC 6 cut(s) 248, 444, 480, 714, 726, 936
FokI GGATG 6 cut(s) 32, 82, 252, 329, 1077, 1078
Fsp4HI GCNGC 6 cut(s) 248, 444, 480, 714, 726, 936
GlaI GCGC 1 cut(s) 514
GluI GCNGC 6 cut(s) 248, 444, 480, 714, 726, 936
GsuI CTGGAG 1 cut(s) 57
HaeIII GGCC 5 cut(s) 44, 132, 299, 571, 650
HapII CCGG 1 cut(s) 67
HhaI GCGC 1 cut(s) 515
Hin1II CATG 3 cut(s) 125, 265, 340
Hin6I GCGC 1 cut(s) 513
HinP1I GCGC 1 cut(s) 513
HincII GTYRAC 1 cut(s) 1054
HindII GTYRAC 1 cut(s) 1054
HindIII AAGCTT 2 cut(s) 827, 1027
HinfI GANTC 7 cut(s) 157, 190, 598, 667, 835, 890, 1041
HpaII CCGG 1 cut(s) 67
HphI GGTGA 3 cut(s) 85, 342, 977
Hpy166II GTNNAC 3 cut(s) 470, 995, 1054
Hpy188I TCNGA 4 cut(s) 400, 789, 823, 960
Hpy188III TCNNGA 6 cut(s) 36, 108, 194, 215, 419, 1112
Hpy8I GTNNAC 3 cut(s) 470, 995, 1054
HpyAV CCTTC 6 cut(s) 147, 307, 373, 458, 504, 560
HpyCH4III ACNGT 4 cut(s) 393, 613, 641, 965
HpyF10VI GCNNNNNNNGC 4 cut(s) 409, 521, 656, 722
HpyF3I CTNAG 5 cut(s) 585, 695, 807, 822, 930
Hsp92II CATG 3 cut(s) 125, 265, 340
HspAI GCGC 1 cut(s) 513
KpnI GGTACC 1 cut(s) 261
Kzo9I GATC 2 cut(s) 29, 925
LmnI GCTCC 2 cut(s) 84, 529
Lsp1109I GCAGC 6 cut(s) 259, 455, 466, 725, 737, 922
LweI GCATC 6 cut(s) 274, 412, 700, 1059, 1069, 1099
MabI ACCWGGT 1 cut(s) 997
MalI GATC 2 cut(s) 31, 927
MboI GATC 2 cut(s) 29, 925
MboII GAAGA 7 cut(s) 162, 209, 387, 571, 772, 984, 1050
MflI RGATCY 1 cut(s) 925
MhlI GDGCHC 1 cut(s) 324
MluCI AATT 2 cut(s) 207, 817
MlyI GAGTC 2 cut(s) 151, 1050
MmeI TCCRAC 1 cut(s) 605
Mph1103I ATGCAT 1 cut(s) 267
MseI TTAA 2 cut(s) 302, 489
MspI CCGG 1 cut(s) 67
MspR9I CCNGG 1 cut(s) 999
MvaI CCWGG 1 cut(s) 999
MwoI GCNNNNNNNGC 4 cut(s) 409, 521, 656, 722
NdeII GATC 2 cut(s) 29, 925
NlaIII CATG 3 cut(s) 125, 265, 340
NlaIV GGNNCC 2 cut(s) 80, 259
NsiI ATGCAT 1 cut(s) 267
PceI AGGCCT 2 cut(s) 44, 299
PfeI GAWTC 5 cut(s) 190, 598, 667, 835, 890
PflFI GACNNNGTC 1 cut(s) 391
PflMI CCANNNNNTGG 1 cut(s) 292
PkrI GCNGC 6 cut(s) 249, 445, 481, 715, 727, 937
PleI GAGTC 2 cut(s) 151, 1049
PpsI GAGTC 2 cut(s) 151, 1049
PshAI GACNNNNGTC 1 cut(s) 690
Psp6I CCWGG 1 cut(s) 997
PspGI CCWGG 1 cut(s) 997
PspN4I GGNNCC 2 cut(s) 80, 259
PspPI GGNCC 1 cut(s) 569
PstI CTGCAG 1 cut(s) 606
PstNI CAGNNNCTG 1 cut(s) 946
PsuI RGATCY 1 cut(s) 925
PsyI GACNNNGTC 1 cut(s) 391
RsaI GTAC 2 cut(s) 259, 798
RsaNI GTAC 2 cut(s) 258, 797
SaqAI TTAA 2 cut(s) 302, 489
SatI GCNGC 6 cut(s) 248, 444, 480, 714, 726, 936
Sau3AI GATC 2 cut(s) 29, 925
Sau96I GGNCC 1 cut(s) 569
SchI GAGTC 2 cut(s) 151, 1050
ScrFI CCNGG 1 cut(s) 999
SduI GDGCHC 1 cut(s) 324
SexAI ACCWGGT 1 cut(s) 997
SfaNI GCATC 6 cut(s) 274, 412, 700, 1059, 1069, 1099
SfcI CTRYAG 3 cut(s) 379, 602, 1012
SmlI CTYRAG 1 cut(s) 830
SmoI CTYRAG 1 cut(s) 830
Sse9I AATT 2 cut(s) 207, 817
SseBI AGGCCT 2 cut(s) 44, 299
StuI AGGCCT 2 cut(s) 44, 299
StyD4I CCNGG 1 cut(s) 997
TaaI ACNGT 4 cut(s) 393, 613, 641, 965
TasI AATT 2 cut(s) 207, 817
TatI WGTACW 1 cut(s) 796
TfiI GAWTC 5 cut(s) 190, 598, 667, 835, 890
Tru1I TTAA 2 cut(s) 302, 489
Tru9I TTAA 2 cut(s) 302, 489
TscAI CASTG 2 cut(s) 396, 457
TseI GCWGC 6 cut(s) 247, 443, 479, 713, 725, 935
TspDTI ATGAA 2 cut(s) 325, 881
TspGWI ACGGA 1 cut(s) 495
TspRI CASTG 2 cut(s) 396, 457
Tth111I GACNNNGTC 1 cut(s) 391
Van91I CCANNNNNTGG 1 cut(s) 292
XagI CCTNNNNNAGG 1 cut(s) 1002
XapI RAATTY 1 cut(s) 817
XmiI GTMKAC 2 cut(s) 469, 994
Zsp2I ATGCAT 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.