Prupe.5G170100_v2.0.a1

FAS-associated factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0012615
Physical Location & Seq
Forward (+)
14580363 .. 14582620
2258 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G170100.1

Sequence Viewer

Length: 1164 bp
ATGTCATCGGCAATGAGGGAAGGCGTAAGATCAGCAGGAGAGGCCTCTCACAATGGGATTGTTCGCCGGATGGTAAGCCTTCCCAGAAGCATTATAGGAGGATTTTCAAGAGCCATGGGTCATCGTAGAGGCCTAATAGGAATAGGAGGAAGAAAAGCCCAAACTCTACCATCAAACTTTCAACTGCAGCAACCAGAAGAGCCCCTAATTGGTCTAGATGTATCAGCTTTTCTACCTAGCTTTGAGCAGCAATATGGCACCATGCATCCATTCTTTTATGCTTGCCATTTTATGGAGGCCTTAAAGATTGCAGAGGGTGAACACAAGTTCTTGTTCATGTATCTCCACTCACCGGAACATCCCTTCACACCCTCTTACTGTAGGGAGACACTGTCTTCAGAGCTGGTGGTGCAGTTTCTTGATGCTAACTTTGTTTCCTGGGGAGCACTTGCTGATAGAGGGGAAGGTCTACAAATGGCTGCAACAATGAACCCTTCTTGCTTTCCATTCTGTGCTGTTATAGCTCCTGCTCCTGGTGAAAGCATAGCAGTGCTAAGACAGATGGAAGGACCAATTTCCCCAACTGAGCTGGTGGGGATTCTGCAGAGGACTGTGGAGGAACAAGGGTCGGCTTTTCGTAGTTCAAAGGTCAAGCAGGCAGAAGCTATAATAGCAGACCGTCGTCTAAGAGAAGAACAAGATGCAGCATATCTTGCAGCTCTGCAGTTAGACAAGGAAAAGGAGAAGCTAAAGAATCTACCTCCAGCAGACACAGCTCAGAAACCAGCAGAAGCCCCTACCAAAGCAAAAAATGAGAGACTTCAAAACTACCCTACCAAACAACAGTACGGAAAAACCAAAGAGGCTTCTAGTACAAGAGGAGCTCAATACAAGGAGGTTGCAAATAGGGGGAAGGATCCTCAGGCTGCTGCACAGATACTGATAAGGTTTCCAAATGGGGAAAGAAGAGAGCAGTGCTTTTTGTGCACAGACAAAGTGCAGTCAATTTACAGATACATAGATTCATTAGGCCTCCCTGGTATAGCAAACTACAGATTGATTTCAAGCTTCCCAAAAAGAGTTTATGGGGTTGACCAAATGGGGATCACACTCAAGGATGCTGGACTGCATCCAAGAGCAACCCTCTTTCTTGAACTTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UBX

Protein Analysis

388

Amino Acids

42.96

Weight (kDa)

8.9

Isoelectric Point (pI)

52.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012615)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g05720 FvH4_5g05720 FvH4_5g05720
malus_domestica MD06G1170500.v1.1 MD14G1176300.v1.1
prunus_persica Prupe.5G170100_v2.0.a1
pyrus_communis pycom06g15190 pycom14g14720
rosa_chinensis RchiOBHm_Chr7g0193081
rosa_laevigata RLG00000004296
rosa_multiflora Rmu_ssc0000002.1_g000009
rosa_roxburghii Rroxscaffold_3G00262380
rosa_rugosa Rorug07G0007500
rosa_samantha Rh7AG132700 Rh7BG133600 Rh7CG136700 Rh7DG134600
rosa_wichuraiana Rw0G015840 Rw7G011340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 257
AccB7I CCANNNNNTGG 1 cut(s) 292
AccI GTMKAC 1 cut(s) 469
AclWI GGATC 3 cut(s) 911, 924, 1112
AcuI CTGAAG 1 cut(s) 381
AfaI GTAC 2 cut(s) 848, 874
AfiI CCNNNNNNNGG 4 cut(s) 209, 292, 352, 533
AgsI TTSAA 6 cut(s) 108, 182, 645, 824, 1065, 1154
AjnI CCWGG 3 cut(s) 437, 532, 1036
Alw21I GWGCWC 3 cut(s) 448, 886, 989
Alw26I GTCTC 2 cut(s) 380, 811
Alw44I GTGCAC 1 cut(s) 985
AlwI GGATC 3 cut(s) 911, 924, 1112
AlwNI CAGNNNCTG 1 cut(s) 940
AoxI GGCC 4 cut(s) 42, 130, 297, 1030
ApaLI GTGCAC 1 cut(s) 985
ApeKI GCWGC 7 cut(s) 187, 247, 479, 704, 716, 926, 929
AspS9I GGNCC 1 cut(s) 569
AsuHPI GGTGA 3 cut(s) 329, 342, 548
AvaII GGWCC 1 cut(s) 569
AxyI CCTNAGG 1 cut(s) 921
BaeGI GKGCMC 1 cut(s) 989
BamHI GGATCC 1 cut(s) 916
BanI GGYRCC 1 cut(s) 257
BanII GRGCYC 2 cut(s) 204, 886
BbsI GAAGAC 1 cut(s) 387
Bbv12I GWGCWC 3 cut(s) 448, 886, 989
BbvI GCAGC 7 cut(s) 199, 259, 466, 716, 728, 913, 916
BccI CCATC 3 cut(s) 64, 178, 556
BciT130I CCWGG 3 cut(s) 439, 534, 1038
BcoDI GTCTC 2 cut(s) 380, 811
BfaI CTAG 3 cut(s) 215, 237, 870
BfmI CTRYAG 5 cut(s) 185, 379, 602, 722, 1051
BisI GCNGC 7 cut(s) 188, 248, 480, 705, 717, 927, 930
BlsI GCNGC 7 cut(s) 189, 249, 481, 706, 718, 928, 931
Bme1390I CCNGG 3 cut(s) 439, 534, 1038
Bme18I GGWCC 1 cut(s) 569
BmgT120I GGNCC 1 cut(s) 569
BmiI GGNNCC 2 cut(s) 259, 918
BmrFI CCNGG 3 cut(s) 439, 534, 1038
BmsI GCATC 5 cut(s) 274, 412, 691, 1108, 1138
BoxI GACNNNNGTC 1 cut(s) 681
BpiI GAAGAC 1 cut(s) 387
BplI GAGNNNNNCTC 2 cut(s) 1128, 1160
BpmI CTGGAG 1 cut(s) 747
BpuEI CTTGAG 1 cut(s) 1097
BsaJI CCNNGG 3 cut(s) 114, 438, 1036
BsaWI WCCGGW 1 cut(s) 352
BsaXI ACNNNNNCTCC 2 cut(s) 377, 407
Bsc4I CCNNNNNNNGG 4 cut(s) 209, 292, 352, 533
Bse21I CCTNAGG 1 cut(s) 921
Bse3DI GCAATG 1 cut(s) 18
BseBI CCWGG 3 cut(s) 439, 534, 1038
BseDI CCNNGG 3 cut(s) 114, 438, 1036
BseGI GGATG 5 cut(s) 75, 265, 358, 1123, 1129
BseLI CCNNNNNNNGG 4 cut(s) 209, 292, 352, 533
BseMI GCAATG 1 cut(s) 18
BseMII CTCAG 3 cut(s) 576, 791, 935
BseRI GAGGAG 1 cut(s) 894
BseSI GKGCMC 1 cut(s) 989
BseXI GCAGC 7 cut(s) 199, 259, 466, 716, 728, 913, 916
BsgI GTGCAG 3 cut(s) 431, 915, 1019
BshFI GGCC 4 cut(s) 44, 132, 299, 1032
BshNI GGYRCC 1 cut(s) 257
BsiHKAI GWGCWC 3 cut(s) 448, 886, 989
BsiSI CCGG 2 cut(s) 67, 353
BslI CCNNNNNNNGG 4 cut(s) 209, 292, 352, 533
BsmAI GTCTC 2 cut(s) 380, 811
BsnI GGCC 4 cut(s) 44, 132, 299, 1032
Bsp1286I GDGCHC 4 cut(s) 204, 448, 886, 989
Bsp143I GATC 3 cut(s) 29, 916, 1104
Bsp19I CCATGG 1 cut(s) 114
BspANI GGCC 4 cut(s) 44, 132, 299, 1032
BspCNI CTCAG 3 cut(s) 577, 790, 934
BspLI GGNNCC 2 cut(s) 259, 918
BspMAI CTGCAG 3 cut(s) 189, 606, 726
BspPI GGATC 3 cut(s) 911, 924, 1112
BspQI GCTCTTC 1 cut(s) 192
BspT107I GGYRCC 1 cut(s) 257
BsrDI GCAATG 1 cut(s) 18
BssECI CCNNGG 3 cut(s) 114, 438, 1036
BssMI GATC 3 cut(s) 29, 916, 1104
BssT1I CCWWGG 1 cut(s) 114
Bst2UI CCWGG 3 cut(s) 439, 534, 1038
Bst4CI ACNGT 5 cut(s) 380, 393, 613, 680, 846
Bst6I CTCTTC 2 cut(s) 192, 961
BstAPI GCANNNNNTGC 1 cut(s) 713
BstC8I GCNNGC 2 cut(s) 283, 657
BstDEI CTNAG 5 cut(s) 554, 585, 686, 777, 921
BstDSI CCRYGG 1 cut(s) 114
BstF5I GGATG 5 cut(s) 75, 265, 358, 1123, 1129
BstKTI GATC 3 cut(s) 32, 919, 1107
BstMAI GTCTC 2 cut(s) 380, 811
BstMBI GATC 3 cut(s) 29, 916, 1104
BstMWI GCNNNNNNNGC 7 cut(s) 41, 409, 521, 671, 713, 773, 984
BstNI CCWGG 3 cut(s) 439, 534, 1038
BstPAI GACNNNNGTC 1 cut(s) 681
BstSCI CCNGG 3 cut(s) 437, 532, 1036
BstSFI CTRYAG 5 cut(s) 185, 379, 602, 722, 1051
BstSLI GKGCMC 1 cut(s) 989
BstV1I GCAGC 7 cut(s) 199, 259, 466, 716, 728, 913, 916
BstV2I GAAGAC 1 cut(s) 387
BstX2I RGATCY 1 cut(s) 916
BstYI RGATCY 1 cut(s) 916
Bsu36I CCTNAGG 1 cut(s) 921
BsuRI GGCC 4 cut(s) 44, 132, 299, 1032
BtgI CCRYGG 1 cut(s) 114
BtsCI GGATG 5 cut(s) 75, 265, 358, 1123, 1129
BtsI GCAGTG 2 cut(s) 555, 980
BtsIMutI CAGTG 3 cut(s) 389, 555, 980
Cac8I GCNNGC 2 cut(s) 283, 657
CaiI CAGNNNCTG 1 cut(s) 940
Cfr13I GGNCC 1 cut(s) 569
Csp6I GTAC 2 cut(s) 847, 873
CviAII CATG 3 cut(s) 115, 262, 337
CviQI GTAC 2 cut(s) 847, 873
DdeI CTNAG 5 cut(s) 554, 585, 686, 777, 921
DpnI GATC 3 cut(s) 31, 918, 1106
DpnII GATC 3 cut(s) 29, 916, 1104
Eam1104I CTCTTC 2 cut(s) 192, 961
EarI CTCTTC 2 cut(s) 192, 961
Ecl136II GAGCTC 1 cut(s) 884
Eco130I CCWWGG 1 cut(s) 114
Eco147I AGGCCT 4 cut(s) 44, 132, 299, 1032
Eco24I GRGCYC 2 cut(s) 204, 886
Eco47I GGWCC 1 cut(s) 569
Eco53kI GAGCTC 1 cut(s) 884
Eco57I CTGAAG 1 cut(s) 381
Eco81I CCTNAGG 1 cut(s) 921
EcoICRI GAGCTC 1 cut(s) 884
EcoRII CCWGG 3 cut(s) 437, 532, 1036
EcoT14I CCWWGG 1 cut(s) 114
EcoT22I ATGCAT 1 cut(s) 267
EcoT38I GRGCYC 2 cut(s) 204, 886
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 3 cut(s) 118, 265, 340
FatI CATG 3 cut(s) 114, 261, 336
FblI GTMKAC 1 cut(s) 469
Fnu4HI GCNGC 7 cut(s) 188, 248, 480, 705, 717, 927, 930
FokI GGATG 5 cut(s) 82, 252, 345, 1116, 1130
FriOI GRGCYC 2 cut(s) 204, 886
Fsp4HI GCNGC 7 cut(s) 188, 248, 480, 705, 717, 927, 930
FspBI CTAG 3 cut(s) 215, 237, 870
GluI GCNGC 7 cut(s) 188, 248, 480, 705, 717, 927, 930
GsuI CTGGAG 1 cut(s) 747
HaeIII GGCC 4 cut(s) 44, 132, 299, 1032
HapII CCGG 2 cut(s) 67, 353
Hin1II CATG 3 cut(s) 118, 265, 340
HincII GTYRAC 1 cut(s) 1093
HindII GTYRAC 1 cut(s) 1093
HindIII AAGCTT 1 cut(s) 1066
HinfI GANTC 3 cut(s) 598, 754, 1022
HpaII CCGG 2 cut(s) 67, 353
HphI GGTGA 3 cut(s) 329, 342, 548
Hpy166II GTNNAC 4 cut(s) 320, 470, 987, 1093
Hpy188I TCNGA 2 cut(s) 400, 780
Hpy188III TCNNGA 4 cut(s) 108, 215, 419, 1151
Hpy8I GTNNAC 4 cut(s) 320, 470, 987, 1093
Hpy99I CGWCG 1 cut(s) 684
HpyAV CCTTC 7 cut(s) 14, 89, 373, 458, 504, 560, 907
HpyCH4III ACNGT 5 cut(s) 380, 393, 613, 680, 846
HpyF10VI GCNNNNNNNGC 7 cut(s) 41, 409, 521, 671, 713, 773, 984
HpyF3I CTNAG 5 cut(s) 554, 585, 686, 777, 921
Hsp92II CATG 3 cut(s) 118, 265, 340
Kzo9I GATC 3 cut(s) 29, 916, 1104
LguI GCTCTTC 1 cut(s) 192
LmnI GCTCC 4 cut(s) 443, 529, 535, 881
Lsp1109I GCAGC 7 cut(s) 199, 259, 466, 716, 728, 913, 916
LweI GCATC 5 cut(s) 274, 412, 691, 1108, 1138
MaeI CTAG 3 cut(s) 215, 237, 870
MalI GATC 3 cut(s) 31, 918, 1106
MboI GATC 3 cut(s) 29, 916, 1104
MboII GAAGA 5 cut(s) 162, 209, 387, 704, 978
MflI RGATCY 1 cut(s) 916
MhlI GDGCHC 4 cut(s) 204, 448, 886, 989
MluCI AATT 3 cut(s) 207, 573, 1005
Mph1103I ATGCAT 1 cut(s) 267
MseI TTAA 1 cut(s) 302
MslI CAYNNNNRTG 1 cut(s) 548
MspI CCGG 2 cut(s) 67, 353
MspR9I CCNGG 3 cut(s) 439, 534, 1038
MvaI CCWGG 3 cut(s) 439, 534, 1038
MwoI GCNNNNNNNGC 7 cut(s) 41, 409, 521, 671, 713, 773, 984
NcoI CCATGG 1 cut(s) 114
NdeII GATC 3 cut(s) 29, 916, 1104
NlaIII CATG 3 cut(s) 118, 265, 340
NlaIV GGNNCC 2 cut(s) 259, 918
NsiI ATGCAT 1 cut(s) 267
PceI AGGCCT 4 cut(s) 44, 132, 299, 1032
PciSI GCTCTTC 1 cut(s) 192
PfeI GAWTC 3 cut(s) 598, 754, 1022
PflFI GACNNNGTC 1 cut(s) 391
PflMI CCANNNNNTGG 1 cut(s) 292
PkrI GCNGC 7 cut(s) 189, 249, 481, 706, 718, 928, 931
PshAI GACNNNNGTC 1 cut(s) 681
Psp124BI GAGCTC 1 cut(s) 886
Psp6I CCWGG 3 cut(s) 437, 532, 1036
PspGI CCWGG 3 cut(s) 437, 532, 1036
PspN4I GGNNCC 2 cut(s) 259, 918
PspPI GGNCC 1 cut(s) 569
PstI CTGCAG 3 cut(s) 189, 606, 726
PstNI CAGNNNCTG 1 cut(s) 940
PsuI RGATCY 1 cut(s) 916
PsyI GACNNNGTC 1 cut(s) 391
RsaI GTAC 2 cut(s) 848, 874
RsaNI GTAC 2 cut(s) 847, 873
RseI CAYNNNNRTG 1 cut(s) 548
SacI GAGCTC 1 cut(s) 886
SapI GCTCTTC 1 cut(s) 192
SaqAI TTAA 1 cut(s) 302
SatI GCNGC 7 cut(s) 188, 248, 480, 705, 717, 927, 930
Sau3AI GATC 3 cut(s) 29, 916, 1104
Sau96I GGNCC 1 cut(s) 569
ScrFI CCNGG 3 cut(s) 439, 534, 1038
SduI GDGCHC 4 cut(s) 204, 448, 886, 989
SfaNI GCATC 5 cut(s) 274, 412, 691, 1108, 1138
SfcI CTRYAG 5 cut(s) 185, 379, 602, 722, 1051
SinI GGWCC 1 cut(s) 569
SmiMI CAYNNNNRTG 1 cut(s) 548
SmlI CTYRAG 1 cut(s) 1112
SmoI CTYRAG 1 cut(s) 1112
Sse9I AATT 3 cut(s) 207, 573, 1005
SseBI AGGCCT 4 cut(s) 44, 132, 299, 1032
SspMI CTAG 3 cut(s) 215, 237, 870
SstI GAGCTC 1 cut(s) 886
StuI AGGCCT 4 cut(s) 44, 132, 299, 1032
StyD4I CCNGG 3 cut(s) 437, 532, 1036
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 5 cut(s) 380, 393, 613, 680, 846
TasI AATT 3 cut(s) 207, 573, 1005
TatI WGTACW 1 cut(s) 872
TfiI GAWTC 3 cut(s) 598, 754, 1022
Tru1I TTAA 1 cut(s) 302
Tru9I TTAA 1 cut(s) 302
TscAI CASTG 3 cut(s) 396, 555, 980
TseI GCWGC 7 cut(s) 187, 247, 479, 704, 716, 926, 929
TspDTI ATGAA 3 cut(s) 325, 503, 1014
TspGWI ACGGA 1 cut(s) 864
TspRI CASTG 3 cut(s) 396, 555, 980
Tth111I GACNNNGTC 1 cut(s) 391
Van91I CCANNNNNTGG 1 cut(s) 292
VneI GTGCAC 1 cut(s) 985
VpaK11BI GGWCC 1 cut(s) 569
XbaI TCTAGA 1 cut(s) 214
XmiI GTMKAC 1 cut(s) 469
XspI CTAG 3 cut(s) 215, 237, 870
Zsp2I ATGCAT 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.