Rh7CG136700

FAS-associated factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0012615
Physical Location & Seq
Forward (+)
11125940 .. 11128802
2863 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG136700.1

Sequence Viewer

Length: 828 bp
ATGTCATCAACAATGAGGGATGACATAAGATCATCTGGAGAGGCCTCTTGCAATGGTATTGTTCGCCGGATGGTGAGGCTCCCCAGAAGCCTGATTGGTGGATTTTCAAGAGCAATGGGTCATGGTAGAGGCCGTATAGGAATAGGAGGAAGAAGGACTCAAAATCTACCATCAAACTTCCAAATGCAGAATCCAGAAGAACCCCCAATTGTTCCTGAAGCATTTGCCTTTCTACATAGCTTTGAGCAGCATTATGGTACCATGCATCCATTCTTTTATGCTTGCCAGTTTATGGAGGCCTTAAAGATTGCGAAGGATGAGCACAAGTTCTTGTTCATGTATCTCCACTCACCAGAACACCCCTTCACACCCTCTTTCTGTAGGGAGACACTGTCTTCGGAGCTGGTGGTGCAGTTTCTTGATGCTAACTTTGTTTCTTGGGCAGCACTCGCGGATAGAGAGGAAGGTCTACAAATGGCTGCAACACTTAACCCTTCTTGCTTTCCGTTCTGCGCTATTATAGCTCCTGCTCCTAGTGATAGCATAGCAGTCTTGCAGAAGATGGAAGGGCCGATTTCTCCAACTGAGCTTATGGGGATTCTGCAGAGGACTGTGGAGGAACAAGGCTTGGCTTTCCACAGTCAAAAGGCCAAGCAGGCAGAACAGAATCAAAAGATGATAGACCGTCGTCTAAGAGACGAACAAGATGCAGCATATCTTGCAGTTCTACAAATAGACAAGGTCTGTAAATTGTACCTCTATGGCTCTATATATGGTTCTTATTTGGTCCACTCTATAAAGTTAACAGCAATTCTTGCCCATTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UBX

Protein Analysis

275

Amino Acids

30.92

Weight (kDa)

6.79

Isoelectric Point (pI)

60.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF1 PF21021 77 - 148 8.1e-12 Fas-associated factor 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012615)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g05720 FvH4_5g05720 FvH4_5g05720
malus_domestica MD06G1170500.v1.1 MD14G1176300.v1.1
prunus_persica Prupe.5G170100_v2.0.a1
pyrus_communis pycom06g15190 pycom14g14720
rosa_chinensis RchiOBHm_Chr7g0193081
rosa_laevigata RLG00000004296
rosa_multiflora Rmu_ssc0000002.1_g000009
rosa_roxburghii Rroxscaffold_3G00262380
rosa_rugosa Rorug07G0007500
rosa_samantha Rh7AG132700 Rh7BG133600 Rh7CG136700 Rh7DG134600
rosa_wichuraiana Rw0G015840 Rw7G011340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 257
AccB1I GGYRCC 1 cut(s) 257
AccB7I CCANNNNNTGG 1 cut(s) 292
AccI GTMKAC 1 cut(s) 469
AccII CGCG 1 cut(s) 452
AciI CCGC 1 cut(s) 452
AcuI CTGAAG 1 cut(s) 237
AfaI GTAC 2 cut(s) 259, 755
AfiI CCNNNNNNNGG 1 cut(s) 292
AgsI TTSAA 1 cut(s) 108
AluBI AGCT 4 cut(s) 240, 403, 524, 589
AluI AGCT 4 cut(s) 240, 403, 524, 589
Alw21I GWGCWC 1 cut(s) 324
Alw26I GTCTC 2 cut(s) 380, 690
AoxI GGCC 5 cut(s) 42, 130, 297, 569, 648
ApeKI GCWGC 4 cut(s) 247, 443, 479, 710
ArsI GACNNNNNNTTYG 2 cut(s) 379, 411
Asp718I GGTACC 1 cut(s) 257
AspLEI GCGC 1 cut(s) 515
AspS9I GGNCC 2 cut(s) 569, 787
AsuHPI GGTGA 2 cut(s) 85, 342
AvaII GGWCC 1 cut(s) 787
BanI GGYRCC 1 cut(s) 257
BbsI GAAGAC 1 cut(s) 387
Bbv12I GWGCWC 1 cut(s) 324
BbvI GCAGC 4 cut(s) 259, 455, 466, 722
BccI CCATC 3 cut(s) 64, 178, 556
BceAI ACGGC 1 cut(s) 117
BcgI CGANNNNNNTGC 2 cut(s) 689, 723
BcoDI GTCTC 2 cut(s) 380, 690
BfaI CTAG 1 cut(s) 534
BfmI CTRYAG 2 cut(s) 379, 602
BglI GCCNNNNNGGC 1 cut(s) 656
BisI GCNGC 4 cut(s) 248, 444, 480, 711
BlsI GCNGC 4 cut(s) 249, 445, 481, 712
Bme18I GGWCC 1 cut(s) 787
BmgT120I GGNCC 2 cut(s) 569, 787
BmiI GGNNCC 2 cut(s) 80, 259
BmsI GCATC 3 cut(s) 274, 412, 697
BoxI GACNNNNGTC 1 cut(s) 687
BpiI GAAGAC 1 cut(s) 387
BpmI CTGGAG 1 cut(s) 57
BsaXI ACNNNNNCTCC 2 cut(s) 377, 407
Bsc4I CCNNNNNNNGG 1 cut(s) 292
Bse1I ACTGG 1 cut(s) 286
Bse3DI GCAATG 2 cut(s) 58, 120
BseGI GGATG 4 cut(s) 25, 75, 265, 322
BseLI CCNNNNNNNGG 1 cut(s) 292
BseMI GCAATG 2 cut(s) 58, 120
BseMII CTCAG 1 cut(s) 576
BseNI ACTGG 1 cut(s) 286
BseXI GCAGC 4 cut(s) 259, 455, 466, 722
BsgI GTGCAG 1 cut(s) 431
Bsh1236I CGCG 1 cut(s) 452
BshFI GGCC 5 cut(s) 44, 132, 299, 571, 650
BshNI GGYRCC 1 cut(s) 257
BsiHKAI GWGCWC 1 cut(s) 324
BsiSI CCGG 1 cut(s) 67
BslI CCNNNNNNNGG 1 cut(s) 292
BsmAI GTCTC 2 cut(s) 380, 690
BsmBI CGTCTC 1 cut(s) 690
BsnI GGCC 5 cut(s) 44, 132, 299, 571, 650
Bsp1286I GDGCHC 1 cut(s) 324
Bsp143I GATC 1 cut(s) 29
BspACI CCGC 1 cut(s) 452
BspANI GGCC 5 cut(s) 44, 132, 299, 571, 650
BspCNI CTCAG 1 cut(s) 577
BspFNI CGCG 1 cut(s) 452
BspLI GGNNCC 2 cut(s) 80, 259
BspMAI CTGCAG 1 cut(s) 606
BspT107I GGYRCC 1 cut(s) 257
BsrDI GCAATG 2 cut(s) 58, 120
BsrI ACTGG 1 cut(s) 286
BssMI GATC 1 cut(s) 29
Bst4CI ACNGT 4 cut(s) 393, 613, 641, 686
BstAPI GCANNNNNTGC 2 cut(s) 719, 815
BstC8I GCNNGC 2 cut(s) 283, 657
BstDEI CTNAG 2 cut(s) 585, 692
BstF5I GGATG 4 cut(s) 25, 75, 265, 322
BstFNI CGCG 1 cut(s) 452
BstHHI GCGC 1 cut(s) 515
BstKTI GATC 1 cut(s) 32
BstMAI GTCTC 2 cut(s) 380, 690
BstMBI GATC 1 cut(s) 29
BstMWI GCNNNNNNNGC 6 cut(s) 409, 449, 521, 656, 719, 815
BstPAI GACNNNNGTC 1 cut(s) 687
BstSFI CTRYAG 2 cut(s) 379, 602
BstUI CGCG 1 cut(s) 452
BstV1I GCAGC 4 cut(s) 259, 455, 466, 722
BstV2I GAAGAC 1 cut(s) 387
BsuRI GGCC 5 cut(s) 44, 132, 299, 571, 650
BtsCI GGATG 4 cut(s) 25, 75, 265, 322
BtsIMutI CAGTG 1 cut(s) 389
Cac8I GCNNGC 2 cut(s) 283, 657
CfoI GCGC 1 cut(s) 515
Cfr13I GGNCC 2 cut(s) 569, 787
Csp6I GTAC 2 cut(s) 258, 754
CviAII CATG 3 cut(s) 122, 262, 337
CviQI GTAC 2 cut(s) 258, 754
DdeI CTNAG 2 cut(s) 585, 692
DpnI GATC 1 cut(s) 31
DpnII GATC 1 cut(s) 29
Eco147I AGGCCT 2 cut(s) 44, 299
Eco47I GGWCC 1 cut(s) 787
Eco57I CTGAAG 1 cut(s) 237
EcoT22I ATGCAT 1 cut(s) 267
Esp3I CGTCTC 1 cut(s) 690
FaeI CATG 3 cut(s) 125, 265, 340
FatI CATG 3 cut(s) 121, 261, 336
FblI GTMKAC 1 cut(s) 469
Fnu4HI GCNGC 4 cut(s) 248, 444, 480, 711
FokI GGATG 4 cut(s) 32, 82, 252, 329
Fsp4HI GCNGC 4 cut(s) 248, 444, 480, 711
FspBI CTAG 1 cut(s) 534
GlaI GCGC 1 cut(s) 514
GluI GCNGC 4 cut(s) 248, 444, 480, 711
GsuI CTGGAG 1 cut(s) 57
HaeIII GGCC 5 cut(s) 44, 132, 299, 571, 650
HapII CCGG 1 cut(s) 67
HhaI GCGC 1 cut(s) 515
Hin1II CATG 3 cut(s) 125, 265, 340
Hin6I GCGC 1 cut(s) 513
HinP1I GCGC 1 cut(s) 513
HincII GTYRAC 1 cut(s) 804
HindII GTYRAC 1 cut(s) 804
HinfI GANTC 4 cut(s) 157, 190, 598, 667
HpaI GTTAAC 1 cut(s) 804
HpaII CCGG 1 cut(s) 67
HphI GGTGA 2 cut(s) 85, 342
Hpy166II GTNNAC 3 cut(s) 470, 790, 804
Hpy188I TCNGA 1 cut(s) 400
Hpy188III TCNNGA 5 cut(s) 36, 108, 194, 215, 419
Hpy8I GTNNAC 3 cut(s) 470, 790, 804
Hpy99I CGWCG 1 cut(s) 690
HpyAV CCTTC 6 cut(s) 147, 307, 373, 458, 504, 560
HpyCH4III ACNGT 4 cut(s) 393, 613, 641, 686
HpyCH4V TGCA 9 cut(s) 51, 187, 265, 412, 482, 556, 604, 710, 722
HpyF10VI GCNNNNNNNGC 6 cut(s) 409, 449, 521, 656, 719, 815
HpyF3I CTNAG 2 cut(s) 585, 692
Hsp92II CATG 3 cut(s) 125, 265, 340
HspAI GCGC 1 cut(s) 513
KpnI GGTACC 1 cut(s) 261
KspAI GTTAAC 1 cut(s) 804
Kzo9I GATC 1 cut(s) 29
LmnI GCTCC 4 cut(s) 84, 400, 529, 535
Lsp1109I GCAGC 4 cut(s) 259, 455, 466, 722
LweI GCATC 3 cut(s) 274, 412, 697
MaeI CTAG 1 cut(s) 534
MalI GATC 1 cut(s) 31
MboI GATC 1 cut(s) 29
MboII GAAGA 4 cut(s) 162, 209, 387, 571
MfeI CAATTG 1 cut(s) 207
MhlI GDGCHC 1 cut(s) 324
MluCI AATT 3 cut(s) 207, 749, 810
MlyI GAGTC 1 cut(s) 151
MmeI TCCRAC 1 cut(s) 605
Mph1103I ATGCAT 1 cut(s) 267
MseI TTAA 3 cut(s) 302, 489, 803
MspI CCGG 1 cut(s) 67
MunI CAATTG 1 cut(s) 207
MvnI CGCG 1 cut(s) 452
MwoI GCNNNNNNNGC 6 cut(s) 409, 449, 521, 656, 719, 815
NdeII GATC 1 cut(s) 29
NlaIII CATG 3 cut(s) 125, 265, 340
NlaIV GGNNCC 2 cut(s) 80, 259
NsiI ATGCAT 1 cut(s) 267
PceI AGGCCT 2 cut(s) 44, 299
PfeI GAWTC 3 cut(s) 190, 598, 667
PflFI GACNNNGTC 2 cut(s) 391, 740
PflMI CCANNNNNTGG 1 cut(s) 292
PkrI GCNGC 4 cut(s) 249, 445, 481, 712
PleI GAGTC 1 cut(s) 151
PpsI GAGTC 1 cut(s) 151
PshAI GACNNNNGTC 1 cut(s) 687
PspN4I GGNNCC 2 cut(s) 80, 259
PspPI GGNCC 2 cut(s) 569, 787
PstI CTGCAG 1 cut(s) 606
PsyI GACNNNGTC 2 cut(s) 391, 740
RsaI GTAC 2 cut(s) 259, 755
RsaNI GTAC 2 cut(s) 258, 754
SaqAI TTAA 3 cut(s) 302, 489, 803
SatI GCNGC 4 cut(s) 248, 444, 480, 711
Sau3AI GATC 1 cut(s) 29
Sau96I GGNCC 2 cut(s) 569, 787
SchI GAGTC 1 cut(s) 151
SduI GDGCHC 1 cut(s) 324
SetI ASST 7 cut(s) 242, 405, 469, 526, 591, 744, 759
SfaNI GCATC 3 cut(s) 274, 412, 697
SfcI CTRYAG 2 cut(s) 379, 602
SinI GGWCC 1 cut(s) 787
Sse9I AATT 3 cut(s) 207, 749, 810
SseBI AGGCCT 2 cut(s) 44, 299
SsiI CCGC 1 cut(s) 452
SspMI CTAG 1 cut(s) 534
StuI AGGCCT 2 cut(s) 44, 299
TaaI ACNGT 4 cut(s) 393, 613, 641, 686
TasI AATT 3 cut(s) 207, 749, 810
TfiI GAWTC 3 cut(s) 190, 598, 667
Tru1I TTAA 3 cut(s) 302, 489, 803
Tru9I TTAA 3 cut(s) 302, 489, 803
TscAI CASTG 1 cut(s) 396
TseI GCWGC 4 cut(s) 247, 443, 479, 710
TspDTI ATGAA 1 cut(s) 325
TspGWI ACGGA 1 cut(s) 495
TspRI CASTG 1 cut(s) 396
Tth111I GACNNNGTC 2 cut(s) 391, 740
Van91I CCANNNNNTGG 1 cut(s) 292
VpaK11BI GGWCC 1 cut(s) 787
XmiI GTMKAC 1 cut(s) 469
XspI CTAG 1 cut(s) 534
Zsp2I ATGCAT 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.