Rh7DG134600

FAS-associated factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0012615
Physical Location & Seq
Forward (+)
11397412 .. 11400077
2666 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG134600.1

Sequence Viewer

Length: 1038 bp
ATGTCATCAACAATGAGGGATGACATAAGATCATCTGGAGAGGCCTCTTGCAATGGTATTGTTCGCCGGATGGTGAGGCTCCCCAGAAGCCTGATTGGTGGATTTTCAAGAGCAATGGGTCATGGTAGAGGCCGTATAGGAATAGGAGGAAGAAGGACTCAAAATCTACCATCAAACTTCCAAATGCAGAATACAGAAGAACCCCTAATTGTTCCTGAAGCATTTGCCTTTCTACATGGCTTTGAGCAGCATTATGGTACCATGCATCCATTCTTTTATGCTTGCCAGTTTATGGAGGCCTTAAAGATTGCGAAGGATGAGCACAAGTTCTTGTTCATGTATCTCCACTCACCAGAACACCCCTTCACACCCTCTTTCTGTAGGGAGACACTGTCTTCAGAGCTGGTGGTGCAGTTTCTTGATGCTAACTTTGTTTCTTGGGCAGCACTCACTGATAGAGAGGAAGGTCTACAAATGGCTGCAACACTTAACCCTTCTTGCTTTCCGTTCTGCGCTATTATAGCTCCTGCTCATAGTGATAGCATAGCAGTCTTGCAGAAGATGGAAGGGCCGATTTCTCCAACTGAGCTTATGGGGATTCTGCAGAGGACTGTGGAGGAACAAGGCTTGGCTTTCCACAGTCAAAAGGCCAAGCAGGCAGAACAGAATCAAAAGATGATAGCAGACCATCGTCTAAGAGACGAACAAGATGCAGCATATCTTGCAGCTCTACAAATAGACAAGGAAAAGGAGAAGCTGAAGAGTTCAGCTTTAGCAGAGAGAATTCAGAAGCCAGTACAAGTCCCTAAGAAAGCAAATTCTGAGAAGCTTGAGAATCATTCTAACAAAAAAAATAATGGAAAAATGAAAGAGGCTTCTGCTACCAGAGATTCTCAATACAAGGAAGTTGCTAATAGGGGGAAAGATCCTCAGGCTGCACAGGTATGCTTGTGGAACCAAAATATCATACATAAAAGCAGTAGTTATCTAATTATATTTTGTGAACTTGGTTTGTTAATGTGTATTTTCAGATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UBX

Protein Analysis

345

Amino Acids

38.96

Weight (kDa)

8.54

Isoelectric Point (pI)

54.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF1 PF21021 77 - 148 1.2e-11 Fas-associated factor 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012615)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g05720 FvH4_5g05720 FvH4_5g05720
malus_domestica MD06G1170500.v1.1 MD14G1176300.v1.1
prunus_persica Prupe.5G170100_v2.0.a1
pyrus_communis pycom06g15190 pycom14g14720
rosa_chinensis RchiOBHm_Chr7g0193081
rosa_laevigata RLG00000004296
rosa_multiflora Rmu_ssc0000002.1_g000009
rosa_roxburghii Rroxscaffold_3G00262380
rosa_rugosa Rorug07G0007500
rosa_samantha Rh7AG132700 Rh7BG133600 Rh7CG136700 Rh7DG134600
rosa_wichuraiana Rw0G015840 Rw7G011340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 257
AccB1I GGYRCC 1 cut(s) 257
AccB7I CCANNNNNTGG 1 cut(s) 292
AccI GTMKAC 1 cut(s) 469
AclWI GGATC 1 cut(s) 920
AcsI RAATTY 2 cut(s) 783, 817
AcuI CTGAAG 3 cut(s) 237, 381, 779
AfaI GTAC 2 cut(s) 259, 798
AfiI CCNNNNNNNGG 1 cut(s) 292
AgsI TTSAA 1 cut(s) 108
AluBI AGCT 7 cut(s) 403, 524, 589, 728, 757, 770, 829
AluI AGCT 7 cut(s) 403, 524, 589, 728, 757, 770, 829
Alw21I GWGCWC 1 cut(s) 324
Alw26I GTCTC 2 cut(s) 380, 693
AlwI GGATC 1 cut(s) 920
AlwNI CAGNNNCTG 1 cut(s) 1035
AoxI GGCC 5 cut(s) 42, 130, 297, 569, 648
ApeKI GCWGC 6 cut(s) 247, 443, 479, 713, 725, 935
ApoI RAATTY 2 cut(s) 783, 817
Asp718I GGTACC 1 cut(s) 257
AspLEI GCGC 1 cut(s) 515
AspS9I GGNCC 1 cut(s) 569
AsuHPI GGTGA 2 cut(s) 85, 342
AxyI CCTNAGG 1 cut(s) 930
BanI GGYRCC 1 cut(s) 257
BbsI GAAGAC 1 cut(s) 387
Bbv12I GWGCWC 1 cut(s) 324
BbvI GCAGC 6 cut(s) 259, 455, 466, 725, 737, 922
BccI CCATC 4 cut(s) 64, 178, 556, 696
BceAI ACGGC 1 cut(s) 117
BcgI CGANNNNNNTGC 2 cut(s) 692, 726
BcoDI GTCTC 2 cut(s) 380, 693
BfmI CTRYAG 2 cut(s) 379, 602
BglI GCCNNNNNGGC 1 cut(s) 656
BisI GCNGC 6 cut(s) 248, 444, 480, 714, 726, 936
BlsI GCNGC 6 cut(s) 249, 445, 481, 715, 727, 937
BmgT120I GGNCC 1 cut(s) 569
BmiI GGNNCC 3 cut(s) 80, 259, 956
BmsI GCATC 3 cut(s) 274, 412, 700
BoxI GACNNNNGTC 1 cut(s) 690
BpiI GAAGAC 1 cut(s) 387
BpmI CTGGAG 1 cut(s) 57
BpuEI CTTGAG 1 cut(s) 851
BsaXI ACNNNNNCTCC 2 cut(s) 377, 407
Bsc4I CCNNNNNNNGG 1 cut(s) 292
Bse1I ACTGG 2 cut(s) 286, 794
Bse21I CCTNAGG 1 cut(s) 930
Bse3DI GCAATG 2 cut(s) 58, 120
BseGI GGATG 4 cut(s) 25, 75, 265, 322
BseLI CCNNNNNNNGG 1 cut(s) 292
BseMI GCAATG 2 cut(s) 58, 120
BseMII CTCAG 3 cut(s) 576, 813, 944
BseNI ACTGG 2 cut(s) 286, 794
BseXI GCAGC 6 cut(s) 259, 455, 466, 725, 737, 922
BsgI GTGCAG 2 cut(s) 431, 921
BshFI GGCC 5 cut(s) 44, 132, 299, 571, 650
BshNI GGYRCC 1 cut(s) 257
BsiHKAI GWGCWC 1 cut(s) 324
BsiSI CCGG 1 cut(s) 67
BslFI GGGAC 1 cut(s) 788
BslI CCNNNNNNNGG 1 cut(s) 292
BsmAI GTCTC 2 cut(s) 380, 693
BsmBI CGTCTC 1 cut(s) 693
BsmFI GGGAC 1 cut(s) 788
BsnI GGCC 5 cut(s) 44, 132, 299, 571, 650
Bsp1286I GDGCHC 1 cut(s) 324
Bsp143I GATC 2 cut(s) 29, 925
BspANI GGCC 5 cut(s) 44, 132, 299, 571, 650
BspCNI CTCAG 3 cut(s) 577, 814, 943
BspLI GGNNCC 3 cut(s) 80, 259, 956
BspMAI CTGCAG 1 cut(s) 606
BspPI GGATC 1 cut(s) 920
BspT107I GGYRCC 1 cut(s) 257
BsrDI GCAATG 2 cut(s) 58, 120
BsrI ACTGG 2 cut(s) 286, 794
BssMI GATC 2 cut(s) 29, 925
Bst4CI ACNGT 3 cut(s) 393, 613, 641
Bst6I CTCTTC 1 cut(s) 755
BstAPI GCANNNNNTGC 1 cut(s) 722
BstC8I GCNNGC 2 cut(s) 283, 657
BstDEI CTNAG 5 cut(s) 585, 695, 807, 822, 930
BstF5I GGATG 4 cut(s) 25, 75, 265, 322
BstHHI GCGC 1 cut(s) 515
BstKTI GATC 2 cut(s) 32, 928
BstMAI GTCTC 2 cut(s) 380, 693
BstMBI GATC 2 cut(s) 29, 925
BstMWI GCNNNNNNNGC 4 cut(s) 409, 521, 656, 722
BstPAI GACNNNNGTC 1 cut(s) 690
BstSFI CTRYAG 2 cut(s) 379, 602
BstV1I GCAGC 6 cut(s) 259, 455, 466, 725, 737, 922
BstV2I GAAGAC 1 cut(s) 387
BstX2I RGATCY 1 cut(s) 925
BstYI RGATCY 1 cut(s) 925
Bsu36I CCTNAGG 1 cut(s) 930
BsuRI GGCC 5 cut(s) 44, 132, 299, 571, 650
BtsCI GGATG 4 cut(s) 25, 75, 265, 322
BtsIMutI CAGTG 2 cut(s) 389, 450
Cac8I GCNNGC 2 cut(s) 283, 657
CaiI CAGNNNCTG 1 cut(s) 1035
CfoI GCGC 1 cut(s) 515
Cfr13I GGNCC 1 cut(s) 569
Csp6I GTAC 2 cut(s) 258, 797
CviAII CATG 4 cut(s) 122, 236, 262, 337
CviQI GTAC 2 cut(s) 258, 797
DdeI CTNAG 5 cut(s) 585, 695, 807, 822, 930
DpnI GATC 2 cut(s) 31, 927
DpnII GATC 2 cut(s) 29, 925
Eam1104I CTCTTC 1 cut(s) 755
EarI CTCTTC 1 cut(s) 755
Eco147I AGGCCT 2 cut(s) 44, 299
Eco57I CTGAAG 3 cut(s) 237, 381, 779
Eco81I CCTNAGG 1 cut(s) 930
EcoRI GAATTC 1 cut(s) 783
EcoT22I ATGCAT 1 cut(s) 267
Esp3I CGTCTC 1 cut(s) 693
FaeI CATG 4 cut(s) 125, 239, 265, 340
FaqI GGGAC 1 cut(s) 788
FatI CATG 4 cut(s) 121, 235, 261, 336
FblI GTMKAC 1 cut(s) 469
Fnu4HI GCNGC 6 cut(s) 248, 444, 480, 714, 726, 936
FokI GGATG 4 cut(s) 32, 82, 252, 329
Fsp4HI GCNGC 6 cut(s) 248, 444, 480, 714, 726, 936
GlaI GCGC 1 cut(s) 514
GluI GCNGC 6 cut(s) 248, 444, 480, 714, 726, 936
GsuI CTGGAG 1 cut(s) 57
HaeIII GGCC 5 cut(s) 44, 132, 299, 571, 650
HapII CCGG 1 cut(s) 67
HhaI GCGC 1 cut(s) 515
Hin1II CATG 4 cut(s) 125, 239, 265, 340
Hin6I GCGC 1 cut(s) 513
HinP1I GCGC 1 cut(s) 513
HindIII AAGCTT 1 cut(s) 827
HinfI GANTC 5 cut(s) 157, 598, 667, 835, 890
HpaII CCGG 1 cut(s) 67
HphI GGTGA 2 cut(s) 85, 342
Hpy166II GTNNAC 2 cut(s) 470, 1004
Hpy188I TCNGA 4 cut(s) 400, 789, 823, 1031
Hpy188III TCNNGA 4 cut(s) 36, 108, 215, 419
Hpy8I GTNNAC 2 cut(s) 470, 1004
HpyAV CCTTC 6 cut(s) 147, 307, 373, 458, 504, 560
HpyCH4III ACNGT 3 cut(s) 393, 613, 641
HpyF10VI GCNNNNNNNGC 4 cut(s) 409, 521, 656, 722
HpyF3I CTNAG 5 cut(s) 585, 695, 807, 822, 930
Hsp92II CATG 4 cut(s) 125, 239, 265, 340
HspAI GCGC 1 cut(s) 513
KpnI GGTACC 1 cut(s) 261
Kzo9I GATC 2 cut(s) 29, 925
LmnI GCTCC 2 cut(s) 84, 529
Lsp1109I GCAGC 6 cut(s) 259, 455, 466, 725, 737, 922
LweI GCATC 3 cut(s) 274, 412, 700
MalI GATC 2 cut(s) 31, 927
MboI GATC 2 cut(s) 29, 925
MboII GAAGA 5 cut(s) 162, 209, 387, 571, 772
MflI RGATCY 1 cut(s) 925
MhlI GDGCHC 1 cut(s) 324
MluCI AATT 4 cut(s) 207, 783, 817, 990
MlyI GAGTC 1 cut(s) 151
MmeI TCCRAC 1 cut(s) 605
Mph1103I ATGCAT 1 cut(s) 267
MseI TTAA 3 cut(s) 302, 489, 1016
MslI CAYNNNNRTG 1 cut(s) 943
MspI CCGG 1 cut(s) 67
MwoI GCNNNNNNNGC 4 cut(s) 409, 521, 656, 722
NdeII GATC 2 cut(s) 29, 925
NlaIII CATG 4 cut(s) 125, 239, 265, 340
NlaIV GGNNCC 3 cut(s) 80, 259, 956
NsiI ATGCAT 1 cut(s) 267
PceI AGGCCT 2 cut(s) 44, 299
PfeI GAWTC 4 cut(s) 598, 667, 835, 890
PflFI GACNNNGTC 1 cut(s) 391
PflMI CCANNNNNTGG 1 cut(s) 292
PkrI GCNGC 6 cut(s) 249, 445, 481, 715, 727, 937
PleI GAGTC 1 cut(s) 151
PpsI GAGTC 1 cut(s) 151
PshAI GACNNNNGTC 1 cut(s) 690
PspN4I GGNNCC 3 cut(s) 80, 259, 956
PspPI GGNCC 1 cut(s) 569
PstI CTGCAG 1 cut(s) 606
PstNI CAGNNNCTG 1 cut(s) 1035
PsuI RGATCY 1 cut(s) 925
PsyI GACNNNGTC 1 cut(s) 391
RsaI GTAC 2 cut(s) 259, 798
RsaNI GTAC 2 cut(s) 258, 797
RseI CAYNNNNRTG 1 cut(s) 943
SaqAI TTAA 3 cut(s) 302, 489, 1016
SatI GCNGC 6 cut(s) 248, 444, 480, 714, 726, 936
Sau3AI GATC 2 cut(s) 29, 925
Sau96I GGNCC 1 cut(s) 569
SchI GAGTC 1 cut(s) 151
SduI GDGCHC 1 cut(s) 324
SetI ASST 9 cut(s) 405, 469, 526, 591, 730, 759, 772, 831, 945
SfaNI GCATC 3 cut(s) 274, 412, 700
SfcI CTRYAG 2 cut(s) 379, 602
SmiMI CAYNNNNRTG 1 cut(s) 943
SmlI CTYRAG 1 cut(s) 830
SmoI CTYRAG 1 cut(s) 830
Sse9I AATT 4 cut(s) 207, 783, 817, 990
SseBI AGGCCT 2 cut(s) 44, 299
StuI AGGCCT 2 cut(s) 44, 299
TaaI ACNGT 3 cut(s) 393, 613, 641
TasI AATT 4 cut(s) 207, 783, 817, 990
TatI WGTACW 1 cut(s) 796
TfiI GAWTC 4 cut(s) 598, 667, 835, 890
Tru1I TTAA 3 cut(s) 302, 489, 1016
Tru9I TTAA 3 cut(s) 302, 489, 1016
TscAI CASTG 2 cut(s) 396, 457
TseI GCWGC 6 cut(s) 247, 443, 479, 713, 725, 935
TspDTI ATGAA 2 cut(s) 325, 881
TspGWI ACGGA 1 cut(s) 495
TspRI CASTG 2 cut(s) 396, 457
Tth111I GACNNNGTC 1 cut(s) 391
Van91I CCANNNNNTGG 1 cut(s) 292
XapI RAATTY 2 cut(s) 783, 817
XmiI GTMKAC 1 cut(s) 469
Zsp2I ATGCAT 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.