Rmu_ssc0000002.1_g000009

FAS-associated factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000002.1
OG0012615
Physical Location & Seq
Reverse (-)
46197 .. 47909
1713 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000002.1_g000009.1.cds

Sequence Viewer

Length: 1158 bp
atgagggatgacataagatcatctggagaggcctcttgcaatggtattgttcgccggatggtgaagctccccagaagcctgattggtggattttcaagagcaatgggtcatggtagaggccgtataggaataggaggaagaaggactcaaaatctaccatcaaacttccaaatgcagaatacagaagaacccccaattgttcctgaagcatttgcctttctacatggctttgagcagcattatggtaccatgcatccattcttttatgcttgccagtttatggaggccttaaagattgcgaaggatgagcacaagttcttgttcatgtatctccactcaccagaacaccccttcacaccctctttctgtagggagacactgtcttcagagctggtggtgcagtttcttgatgctaactttgtttcttgggcagcactcactgatagagaggaaggtctacaaatggctgcaacacttaacccttcttgctttccgttctgcgctattatagctcctgctcatagtgatagcatagcagtcttgcagaagatggaagggccgatttctccaactgagcttatggggattctgcagcggactgtggaggaacaaggcttggctttccacagtcaaaaggccaagcaggcagaacagaatcaaaagatgatagcagaccatcgtctaagagacgaacaagatgcagcatatcttgcagctctacaaatagacaaggaaaaggagaagctgaagagttcagctttagcagagagagttcagaagccagtacaagtccctaagaaagcaaattctgagaagcttgagaatcattctaacaaaaaaaataatggaaaaatgaaagaggcttctgctaccagagattctcaatacaaggaggttgctaatagggggaaagatcctcaggctgcacagatactgataaggtttccgaacggtgaaagaagagagcaatgcttcttatgcacagacaaagtgcaggcaatttacagatacatagattcattaggtctacctggtataggaaactacagattgatatcaagcttcccaagaagagtctatggggttgaccagatggggatgatgctcaaagatgctggtctgcatccaagagcaagcctatttcttgaacttctgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UBX

Protein Analysis

385

Amino Acids

43.41

Weight (kDa)

8.84

Isoelectric Point (pI)

47.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012615)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g05720 FvH4_5g05720 FvH4_5g05720
malus_domestica MD06G1170500.v1.1 MD14G1176300.v1.1
prunus_persica Prupe.5G170100_v2.0.a1
pyrus_communis pycom06g15190 pycom14g14720
rosa_chinensis RchiOBHm_Chr7g0193081
rosa_laevigata RLG00000004296
rosa_multiflora Rmu_ssc0000002.1_g000009
rosa_roxburghii Rroxscaffold_3G00262380
rosa_rugosa Rorug07G0007500
rosa_samantha Rh7AG132700 Rh7BG133600 Rh7CG136700 Rh7DG134600
rosa_wichuraiana Rw0G015840 Rw7G011340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 245
AccB1I GGYRCC 1 cut(s) 245
AccB7I CCANNNNNTGG 1 cut(s) 280
AccI GTMKAC 2 cut(s) 457, 1027
AciI CCGC 1 cut(s) 595
AclWI GGATC 1 cut(s) 908
AcsI RAATTY 1 cut(s) 805
AcuI CTGAAG 3 cut(s) 225, 369, 767
AfaI GTAC 2 cut(s) 247, 786
AfiI CCNNNNNNNGG 2 cut(s) 280, 1037
AgsI TTSAA 2 cut(s) 96, 1148
AjnI CCWGG 1 cut(s) 1030
AluBI AGCT 9 cut(s) 67, 391, 512, 577, 716, 745, 758, 817, 1062
AluI AGCT 9 cut(s) 67, 391, 512, 577, 716, 745, 758, 817, 1062
Alw21I GWGCWC 1 cut(s) 312
Alw26I GTCTC 2 cut(s) 368, 681
AlwI GGATC 1 cut(s) 908
AlwNI CAGNNNCTG 1 cut(s) 934
AoxI GGCC 5 cut(s) 30, 118, 285, 557, 636
ApeKI GCWGC 7 cut(s) 235, 431, 467, 592, 701, 713, 923
ApoI RAATTY 1 cut(s) 805
Asp718I GGTACC 1 cut(s) 245
AspLEI GCGC 1 cut(s) 503
AspS9I GGNCC 1 cut(s) 557
AsuHPI GGTGA 3 cut(s) 73, 330, 965
AxyI CCTNAGG 1 cut(s) 918
BanI GGYRCC 1 cut(s) 245
BbsI GAAGAC 1 cut(s) 375
Bbv12I GWGCWC 1 cut(s) 312
BbvI GCAGC 7 cut(s) 247, 443, 454, 604, 713, 725, 910
BccI CCATC 5 cut(s) 52, 166, 544, 684, 1087
BceAI ACGGC 1 cut(s) 105
BcgI CGANNNNNNTGC 2 cut(s) 680, 714
BciT130I CCWGG 1 cut(s) 1032
BcoDI GTCTC 2 cut(s) 368, 681
BfmI CTRYAG 3 cut(s) 367, 590, 1045
BglI GCCNNNNNGGC 1 cut(s) 644
BisI GCNGC 7 cut(s) 236, 432, 468, 593, 702, 714, 924
BlsI GCNGC 7 cut(s) 237, 433, 469, 594, 703, 715, 925
Bme1390I CCNGG 1 cut(s) 1032
BmgT120I GGNCC 1 cut(s) 557
BmiI GGNNCC 1 cut(s) 247
BmrFI CCNGG 1 cut(s) 1032
BmsI GCATC 6 cut(s) 262, 400, 688, 1092, 1102, 1132
BoxI GACNNNNGTC 1 cut(s) 678
BpiI GAAGAC 1 cut(s) 375
BpmI CTGGAG 1 cut(s) 45
BpuEI CTTGAG 1 cut(s) 839
BsaBI GATNNNNATC 1 cut(s) 1054
BsaXI ACNNNNNCTCC 2 cut(s) 365, 395
Bsc4I CCNNNNNNNGG 2 cut(s) 280, 1037
Bse1I ACTGG 2 cut(s) 274, 782
Bse21I CCTNAGG 1 cut(s) 918
Bse3DI GCAATG 3 cut(s) 46, 108, 974
Bse8I GATNNNNATC 1 cut(s) 1054
BseBI CCWGG 1 cut(s) 1032
BseGI GGATG 6 cut(s) 13, 63, 253, 310, 1104, 1123
BseJI GATNNNNATC 1 cut(s) 1054
BseLI CCNNNNNNNGG 2 cut(s) 280, 1037
BseMI GCAATG 3 cut(s) 46, 108, 974
BseMII CTCAG 3 cut(s) 564, 801, 932
BseNI ACTGG 2 cut(s) 274, 782
BseXI GCAGC 7 cut(s) 247, 443, 454, 604, 713, 725, 910
BsgI GTGCAG 3 cut(s) 419, 909, 1013
BshFI GGCC 5 cut(s) 32, 120, 287, 559, 638
BshNI GGYRCC 1 cut(s) 245
BsiHKAI GWGCWC 1 cut(s) 312
BsiSI CCGG 1 cut(s) 55
BslFI GGGAC 1 cut(s) 776
BslI CCNNNNNNNGG 2 cut(s) 280, 1037
BsmAI GTCTC 2 cut(s) 368, 681
BsmBI CGTCTC 1 cut(s) 681
BsmFI GGGAC 1 cut(s) 776
BsnI GGCC 5 cut(s) 32, 120, 287, 559, 638
Bsp1286I GDGCHC 1 cut(s) 312
Bsp143I GATC 2 cut(s) 17, 913
BspACI CCGC 1 cut(s) 595
BspANI GGCC 5 cut(s) 32, 120, 287, 559, 638
BspCNI CTCAG 3 cut(s) 565, 802, 931
BspLI GGNNCC 1 cut(s) 247
BspMAI CTGCAG 1 cut(s) 594
BspPI GGATC 1 cut(s) 908
BspT107I GGYRCC 1 cut(s) 245
BsrDI GCAATG 3 cut(s) 46, 108, 974
BsrI ACTGG 2 cut(s) 274, 782
BssMI GATC 2 cut(s) 17, 913
Bst2UI CCWGG 1 cut(s) 1032
Bst4CI ACNGT 4 cut(s) 381, 601, 629, 953
Bst6I CTCTTC 3 cut(s) 743, 955, 1066
BstAPI GCANNNNNTGC 1 cut(s) 710
BstC8I GCNNGC 4 cut(s) 271, 645, 996, 1135
BstDEI CTNAG 5 cut(s) 573, 683, 795, 810, 918
BstENI CCTNNNNNAGG 1 cut(s) 1035
BstF5I GGATG 6 cut(s) 13, 63, 253, 310, 1104, 1123
BstHHI GCGC 1 cut(s) 503
BstKTI GATC 2 cut(s) 20, 916
BstMAI GTCTC 2 cut(s) 368, 681
BstMBI GATC 2 cut(s) 17, 913
BstMWI GCNNNNNNNGC 5 cut(s) 397, 509, 644, 710, 978
BstNI CCWGG 1 cut(s) 1032
BstPAI GACNNNNGTC 1 cut(s) 678
BstSCI CCNGG 1 cut(s) 1030
BstSFI CTRYAG 3 cut(s) 367, 590, 1045
BstV1I GCAGC 7 cut(s) 247, 443, 454, 604, 713, 725, 910
BstV2I GAAGAC 1 cut(s) 375
BstX2I RGATCY 1 cut(s) 913
BstYI RGATCY 1 cut(s) 913
Bsu36I CCTNAGG 1 cut(s) 918
BsuRI GGCC 5 cut(s) 32, 120, 287, 559, 638
BtsCI GGATG 6 cut(s) 13, 63, 253, 310, 1104, 1123
BtsIMutI CAGTG 2 cut(s) 377, 438
Cac8I GCNNGC 4 cut(s) 271, 645, 996, 1135
CaiI CAGNNNCTG 1 cut(s) 934
CfoI GCGC 1 cut(s) 503
Cfr13I GGNCC 1 cut(s) 557
CsiI ACCWGGT 1 cut(s) 1030
Csp6I GTAC 2 cut(s) 246, 785
CviAII CATG 4 cut(s) 110, 224, 250, 325
CviQI GTAC 2 cut(s) 246, 785
DdeI CTNAG 5 cut(s) 573, 683, 795, 810, 918
DpnI GATC 2 cut(s) 19, 915
DpnII GATC 2 cut(s) 17, 913
Eam1104I CTCTTC 3 cut(s) 743, 955, 1066
EarI CTCTTC 3 cut(s) 743, 955, 1066
Eco147I AGGCCT 2 cut(s) 32, 287
Eco32I GATATC 1 cut(s) 1056
Eco57I CTGAAG 3 cut(s) 225, 369, 767
Eco81I CCTNAGG 1 cut(s) 918
EcoNI CCTNNNNNAGG 1 cut(s) 1035
EcoRII CCWGG 1 cut(s) 1030
EcoRV GATATC 1 cut(s) 1056
EcoT22I ATGCAT 1 cut(s) 255
Esp3I CGTCTC 1 cut(s) 681
FaeI CATG 4 cut(s) 113, 227, 253, 328
FaqI GGGAC 1 cut(s) 776
FatI CATG 4 cut(s) 109, 223, 249, 324
FblI GTMKAC 2 cut(s) 457, 1027
Fnu4HI GCNGC 7 cut(s) 236, 432, 468, 593, 702, 714, 924
FokI GGATG 6 cut(s) 20, 70, 240, 317, 1110, 1111
Fsp4HI GCNGC 7 cut(s) 236, 432, 468, 593, 702, 714, 924
GlaI GCGC 1 cut(s) 502
GluI GCNGC 7 cut(s) 236, 432, 468, 593, 702, 714, 924
GsuI CTGGAG 1 cut(s) 45
HaeIII GGCC 5 cut(s) 32, 120, 287, 559, 638
HapII CCGG 1 cut(s) 55
HhaI GCGC 1 cut(s) 503
Hin1II CATG 4 cut(s) 113, 227, 253, 328
Hin6I GCGC 1 cut(s) 501
HinP1I GCGC 1 cut(s) 501
HincII GTYRAC 1 cut(s) 1087
HindII GTYRAC 1 cut(s) 1087
HindIII AAGCTT 2 cut(s) 815, 1060
HinfI GANTC 7 cut(s) 145, 586, 655, 823, 878, 1016, 1074
HpaII CCGG 1 cut(s) 55
HphI GGTGA 3 cut(s) 73, 330, 965
Hpy166II GTNNAC 3 cut(s) 458, 1028, 1087
Hpy188I TCNGA 4 cut(s) 388, 777, 811, 948
Hpy188III TCNNGA 5 cut(s) 24, 96, 203, 407, 1145
Hpy8I GTNNAC 3 cut(s) 458, 1028, 1087
HpyAV CCTTC 6 cut(s) 135, 295, 361, 446, 492, 548
HpyCH4III ACNGT 4 cut(s) 381, 601, 629, 953
HpyF10VI GCNNNNNNNGC 5 cut(s) 397, 509, 644, 710, 978
HpyF3I CTNAG 5 cut(s) 573, 683, 795, 810, 918
Hsp92II CATG 4 cut(s) 113, 227, 253, 328
HspAI GCGC 1 cut(s) 501
KpnI GGTACC 1 cut(s) 249
Kzo9I GATC 2 cut(s) 17, 913
LmnI GCTCC 2 cut(s) 72, 517
Lsp1109I GCAGC 7 cut(s) 247, 443, 454, 604, 713, 725, 910
LweI GCATC 6 cut(s) 262, 400, 688, 1092, 1102, 1132
MabI ACCWGGT 1 cut(s) 1030
MalI GATC 2 cut(s) 19, 915
MboI GATC 2 cut(s) 17, 913
MboII GAAGA 7 cut(s) 150, 197, 375, 559, 760, 972, 1083
MfeI CAATTG 1 cut(s) 195
MflI RGATCY 1 cut(s) 913
MhlI GDGCHC 1 cut(s) 312
MluCI AATT 3 cut(s) 195, 805, 999
MlyI GAGTC 2 cut(s) 139, 1083
MmeI TCCRAC 1 cut(s) 593
Mph1103I ATGCAT 1 cut(s) 255
MseI TTAA 2 cut(s) 290, 477
MspA1I CMGCKG 1 cut(s) 595
MspI CCGG 1 cut(s) 55
MspR9I CCNGG 1 cut(s) 1032
MunI CAATTG 1 cut(s) 195
MvaI CCWGG 1 cut(s) 1032
MwoI GCNNNNNNNGC 5 cut(s) 397, 509, 644, 710, 978
NdeII GATC 2 cut(s) 17, 913
NlaIII CATG 4 cut(s) 113, 227, 253, 328
NlaIV GGNNCC 1 cut(s) 247
NsiI ATGCAT 1 cut(s) 255
PceI AGGCCT 2 cut(s) 32, 287
PfeI GAWTC 5 cut(s) 586, 655, 823, 878, 1016
PflFI GACNNNGTC 1 cut(s) 379
PflMI CCANNNNNTGG 1 cut(s) 280
PkrI GCNGC 7 cut(s) 237, 433, 469, 594, 703, 715, 925
PleI GAGTC 2 cut(s) 139, 1082
PpsI GAGTC 2 cut(s) 139, 1082
PshAI GACNNNNGTC 1 cut(s) 678
Psp6I CCWGG 1 cut(s) 1030
PspGI CCWGG 1 cut(s) 1030
PspN4I GGNNCC 1 cut(s) 247
PspPI GGNCC 1 cut(s) 557
PstI CTGCAG 1 cut(s) 594
PstNI CAGNNNCTG 1 cut(s) 934
PsuI RGATCY 1 cut(s) 913
PsyI GACNNNGTC 1 cut(s) 379
RsaI GTAC 2 cut(s) 247, 786
RsaNI GTAC 2 cut(s) 246, 785
SaqAI TTAA 2 cut(s) 290, 477
SatI GCNGC 7 cut(s) 236, 432, 468, 593, 702, 714, 924
Sau3AI GATC 2 cut(s) 17, 913
Sau96I GGNCC 1 cut(s) 557
SchI GAGTC 2 cut(s) 139, 1083
ScrFI CCNGG 1 cut(s) 1032
SduI GDGCHC 1 cut(s) 312
SexAI ACCWGGT 1 cut(s) 1030
SfaNI GCATC 6 cut(s) 262, 400, 688, 1092, 1102, 1132
SfcI CTRYAG 3 cut(s) 367, 590, 1045
SmlI CTYRAG 1 cut(s) 818
SmoI CTYRAG 1 cut(s) 818
Sse9I AATT 3 cut(s) 195, 805, 999
SseBI AGGCCT 2 cut(s) 32, 287
SsiI CCGC 1 cut(s) 595
StuI AGGCCT 2 cut(s) 32, 287
StyD4I CCNGG 1 cut(s) 1030
TaaI ACNGT 4 cut(s) 381, 601, 629, 953
TasI AATT 3 cut(s) 195, 805, 999
TatI WGTACW 1 cut(s) 784
TfiI GAWTC 5 cut(s) 586, 655, 823, 878, 1016
Tru1I TTAA 2 cut(s) 290, 477
Tru9I TTAA 2 cut(s) 290, 477
TscAI CASTG 2 cut(s) 384, 445
TseI GCWGC 7 cut(s) 235, 431, 467, 592, 701, 713, 923
TspDTI ATGAA 3 cut(s) 313, 869, 1008
TspGWI ACGGA 1 cut(s) 483
TspRI CASTG 2 cut(s) 384, 445
Tth111I GACNNNGTC 1 cut(s) 379
Van91I CCANNNNNTGG 1 cut(s) 280
XagI CCTNNNNNAGG 1 cut(s) 1035
XapI RAATTY 1 cut(s) 805
XmiI GTMKAC 2 cut(s) 457, 1027
Zsp2I ATGCAT 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.