Rorug07G0007500

FAS-associated factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0012615
Physical Location & Seq
Forward (+)
605954 .. 606978
1025 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0007500.1

Sequence Viewer

Length: 708 bp
ATGCGCCTCTGCTTCTGTACACTGGTATATCATCAAGCACATAGCTATCTGAGGCTGAGAGAACCAGAGAAAAGAGAGATGGAGGGAGAGAACTCATCAAACGATGTATACAGAGAGTGCCTCAGAAACCATGCAGCCAGCCTCGGCAGCTATGCCACCGACGGGTGTGGAGAGTTTACACTCGACGACACCTCGTCCCCAGGCGGACTACAATGCGCCGCCTGCGGCTGCCACCGCAACTTCCACCGCCGAGTCACCTACGCACCCGGCGTAGGCAGATCATCCGGCGGCGGCACTGCTCATCATCGCGTCATCAGCTGCAGCAGCCGAGGAGGCCGAGGAGATCTTCACCACGAGATGATGACGTCACAGGAACTGATTGACTACAATGTCGGCGGTGGAGGGGGAGCAGCGGCGCGGCAGATGATGGTGGTGGAGTCACCGGACAGCGGGGACAGGAGCGGCAGCGGGAGGAAGCGGTTCAGGTCCAAGTTCACGGTGGAGCAGAAGGAGAAGATGCTGGCGTTTGCGGAGAAGCTGGGGTGGAAGCTGCAGAGGAAAGATCTAGAAGATGAGATTGAGAGGTTCTGCAGAAGTATTGGGGTCAGCAGACAGGTTTTCAAAGTGTGGATGCATAACCACAAGAACCTCTCCTCTTCTTCTTCTGCATCTACAACTGCCAATGCCTCCTCTCTCACAACCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UBX

Protein Analysis

235

Amino Acids

25.96

Weight (kDa)

8.88

Isoelectric Point (pI)

65.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZF-HD_dimer PF04770 36 - 86 5.5e-24 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012615)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g05720 FvH4_5g05720 FvH4_5g05720
malus_domestica MD06G1170500.v1.1 MD14G1176300.v1.1
prunus_persica Prupe.5G170100_v2.0.a1
pyrus_communis pycom06g15190 pycom14g14720
rosa_chinensis RchiOBHm_Chr7g0193081
rosa_laevigata RLG00000004296
rosa_multiflora Rmu_ssc0000002.1_g000009
rosa_roxburghii Rroxscaffold_3G00262380
rosa_rugosa Rorug07G0007500
rosa_samantha Rh7AG132700 Rh7BG133600 Rh7CG136700 Rh7DG134600
rosa_wichuraiana Rw0G015840 Rw7G011340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 389
AatII GACGTC 1 cut(s) 368
AccBSI CCGCTC 1 cut(s) 462
AccI GTMKAC 1 cut(s) 108
AccII CGCG 2 cut(s) 309, 418
AcyI GRCGYC 1 cut(s) 365
AfaI GTAC 1 cut(s) 19
AfiI CCNNNNNNNGG 3 cut(s) 162, 272, 449
AgsI TTSAA 1 cut(s) 622
AhdI GACNNNNNGTC 1 cut(s) 193
AjnI CCWGG 1 cut(s) 199
AluBI AGCT 5 cut(s) 45, 150, 318, 538, 550
AluI AGCT 5 cut(s) 45, 150, 318, 538, 550
AlwNI CAGNNNCTG 1 cut(s) 376
AoxI GGCC 1 cut(s) 334
ApeKI GCWGC 9 cut(s) 134, 147, 228, 318, 321, 324, 410, 465, 550
Asp700I GAANNNNTTC 1 cut(s) 479
AspLEI GCGC 3 cut(s) 6, 218, 418
AspS9I GGNCC 1 cut(s) 486
AsuC2I CCSGG 1 cut(s) 267
AsuHPI GGTGA 3 cut(s) 247, 341, 432
AvaII GGWCC 1 cut(s) 486
BauI CACGAG 1 cut(s) 353
BbvI GCAGC 9 cut(s) 146, 159, 215, 305, 333, 336, 422, 477, 537
BccI CCATC 2 cut(s) 73, 421
BciT130I CCWGG 1 cut(s) 201
BcnI CCSGG 1 cut(s) 267
BfaI CTAG 1 cut(s) 566
BfmI CTRYAG 3 cut(s) 319, 551, 589
BglI GCCNNNNNGGC 1 cut(s) 333
BglII AGATCT 2 cut(s) 343, 562
Bme1390I CCNGG 2 cut(s) 201, 267
Bme18I GGWCC 1 cut(s) 486
BmeRI GACNNNNNGTC 1 cut(s) 193
BmgT120I GGNCC 1 cut(s) 486
BmrFI CCNGG 2 cut(s) 201, 267
BmrI ACTGGG 1 cut(s) 697
BmsI GCATC 3 cut(s) 507, 621, 677
BmuI ACTGGG 1 cut(s) 697
BplI GAGNNNNNCTC 2 cut(s) 105, 137
BpuMI CCSGG 1 cut(s) 267
BsaHI GRCGYC 1 cut(s) 365
BsaJI CCNNGG 4 cut(s) 142, 199, 328, 337
BsaWI WCCGGW 1 cut(s) 442
Bsc4I CCNNNNNNNGG 3 cut(s) 162, 272, 449
Bse1I ACTGG 2 cut(s) 27, 703
BseBI CCWGG 1 cut(s) 201
BseDI CCNNGG 4 cut(s) 142, 199, 328, 337
BseGI GGATG 2 cut(s) 281, 636
BseLI CCNNNNNNNGG 3 cut(s) 162, 272, 449
BseMII CTCAG 3 cut(s) 41, 47, 136
BseNI ACTGG 2 cut(s) 27, 703
BseRI GAGGAG 4 cut(s) 345, 354, 643, 679
BseXI GCAGC 9 cut(s) 146, 159, 215, 305, 333, 336, 422, 477, 537
BseYI CCCAGC 1 cut(s) 538
Bsh1236I CGCG 2 cut(s) 309, 418
BshFI GGCC 1 cut(s) 336
BsiSI CCGG 3 cut(s) 267, 285, 443
BslFI GGGAC 2 cut(s) 181, 467
BslI CCNNNNNNNGG 3 cut(s) 162, 272, 449
BsmFI GGGAC 2 cut(s) 181, 467
BsnI GGCC 1 cut(s) 336
Bsp1407I TGTACA 1 cut(s) 17
Bsp143I GATC 3 cut(s) 278, 343, 562
BspANI GGCC 1 cut(s) 336
BspCNI CTCAG 3 cut(s) 42, 48, 135
BspFNI CGCG 2 cut(s) 309, 418
BspMAI CTGCAG 3 cut(s) 323, 555, 593
BsrBI CCGCTC 1 cut(s) 462
BsrGI TGTACA 1 cut(s) 17
BsrI ACTGG 2 cut(s) 27, 703
BssECI CCNNGG 4 cut(s) 142, 199, 328, 337
BssMI GATC 3 cut(s) 278, 343, 562
BssNAI GTATAC 1 cut(s) 109
BssNI GRCGYC 1 cut(s) 365
BssSI CACGAG 1 cut(s) 353
Bst1107I GTATAC 1 cut(s) 109
Bst2BI CACGAG 1 cut(s) 353
Bst2UI CCWGG 1 cut(s) 201
Bst4CI ACNGT 1 cut(s) 499
Bst6I CTCTTC 1 cut(s) 661
BstACI GRCGYC 1 cut(s) 365
BstAUI TGTACA 1 cut(s) 17
BstC8I GCNNGC 3 cut(s) 139, 223, 522
BstDEI CTNAG 3 cut(s) 50, 56, 122
BstF5I GGATG 2 cut(s) 281, 636
BstFNI CGCG 2 cut(s) 309, 418
BstHHI GCGC 3 cut(s) 6, 218, 418
BstKTI GATC 3 cut(s) 281, 346, 565
BstMBI GATC 3 cut(s) 278, 343, 562
BstMWI GCNNNNNNNGC 6 cut(s) 147, 222, 234, 315, 324, 333
BstNI CCWGG 1 cut(s) 201
BstSCI CCNGG 2 cut(s) 199, 265
BstSFI CTRYAG 3 cut(s) 319, 551, 589
BstUI CGCG 2 cut(s) 309, 418
BstV1I GCAGC 9 cut(s) 146, 159, 215, 305, 333, 336, 422, 477, 537
BstX2I RGATCY 2 cut(s) 343, 562
BstYI RGATCY 2 cut(s) 343, 562
BstZ17I GTATAC 1 cut(s) 109
BsuRI GGCC 1 cut(s) 336
BtgZI GCGATG 1 cut(s) 290
BtsCI GGATG 2 cut(s) 281, 636
BtsI GCAGTG 1 cut(s) 294
BtsIMutI CAGTG 2 cut(s) 20, 294
Cac8I GCNNGC 3 cut(s) 139, 223, 522
CaiI CAGNNNCTG 1 cut(s) 376
CfoI GCGC 3 cut(s) 6, 218, 418
Cfr13I GGNCC 1 cut(s) 486
CseI GACGC 1 cut(s) 298
Csp6I GTAC 1 cut(s) 18
CviAII CATG 1 cut(s) 131
CviQI GTAC 1 cut(s) 18
DdeI CTNAG 3 cut(s) 50, 56, 122
DpnI GATC 3 cut(s) 280, 345, 564
DpnII GATC 3 cut(s) 278, 343, 562
DrdI GACNNNNNNGTC 1 cut(s) 389
DriI GACNNNNNGTC 1 cut(s) 193
DseDI GACNNNNNNGTC 1 cut(s) 389
Eam1104I CTCTTC 1 cut(s) 661
Eam1105I GACNNNNNGTC 1 cut(s) 193
EarI CTCTTC 1 cut(s) 661
EciI GGCGGA 1 cut(s) 219
Eco47I GGWCC 1 cut(s) 486
EcoRII CCWGG 1 cut(s) 199
EcoT22I ATGCAT 1 cut(s) 636
FaeI CATG 1 cut(s) 134
FaiI YATR 6 cut(s) 28, 42, 109, 132, 153, 636
FaqI GGGAC 2 cut(s) 181, 467
FatI CATG 1 cut(s) 130
FauI CCCGC 2 cut(s) 443, 461
FblI GTMKAC 1 cut(s) 108
FokI GGATG 2 cut(s) 268, 643
FspBI CTAG 1 cut(s) 566
GlaI GCGC 3 cut(s) 5, 217, 417
GsaI CCCAGC 1 cut(s) 542
HaeIII GGCC 1 cut(s) 336
HapII CCGG 3 cut(s) 267, 285, 443
HgaI GACGC 1 cut(s) 298
HhaI GCGC 3 cut(s) 6, 218, 418
Hin1I GRCGYC 1 cut(s) 365
Hin1II CATG 1 cut(s) 134
Hin6I GCGC 3 cut(s) 4, 216, 416
HinP1I GCGC 3 cut(s) 4, 216, 416
HinfI GANTC 2 cut(s) 252, 437
HpaII CCGG 3 cut(s) 267, 285, 443
HphI GGTGA 3 cut(s) 247, 341, 432
Hpy166II GTNNAC 4 cut(s) 20, 109, 177, 495
Hpy188I TCNGA 2 cut(s) 51, 125
Hpy188III TCNNGA 1 cut(s) 566
Hpy8I GTNNAC 4 cut(s) 20, 109, 177, 495
Hpy99I CGWCG 2 cut(s) 164, 188
HpyAV CCTTC 1 cut(s) 502
HpyCH4III ACNGT 1 cut(s) 499
HpyCH4IV ACGT 1 cut(s) 365
HpyCH4V TGCA 6 cut(s) 134, 321, 553, 591, 634, 668
HpyF10VI GCNNNNNNNGC 6 cut(s) 147, 222, 234, 315, 324, 333
HpyF3I CTNAG 3 cut(s) 50, 56, 122
HpySE526I ACGT 1 cut(s) 365
Hsp92I GRCGYC 1 cut(s) 365
Hsp92II CATG 1 cut(s) 134
HspAI GCGC 3 cut(s) 4, 216, 416
Kzo9I GATC 3 cut(s) 278, 343, 562
LmnI GCTCC 3 cut(s) 407, 459, 502
Lsp1109I GCAGC 9 cut(s) 146, 159, 215, 305, 333, 336, 422, 477, 537
LweI GCATC 3 cut(s) 507, 621, 677
MaeI CTAG 1 cut(s) 566
MaeII ACGT 1 cut(s) 365
MaeIII GTNAC 3 cut(s) 253, 366, 438
MalI GATC 3 cut(s) 280, 345, 564
MbiI CCGCTC 1 cut(s) 462
MboI GATC 3 cut(s) 278, 343, 562
MboII GAAGA 6 cut(s) 338, 526, 581, 648, 651, 654
MflI RGATCY 2 cut(s) 343, 562
MlyI GAGTC 2 cut(s) 261, 446
Mph1103I ATGCAT 1 cut(s) 636
MroXI GAANNNNTTC 1 cut(s) 479
MspA1I CMGCKG 4 cut(s) 318, 413, 450, 468
MspI CCGG 3 cut(s) 267, 285, 443
MspR9I CCNGG 2 cut(s) 201, 267
MvaI CCWGG 1 cut(s) 201
MvnI CGCG 2 cut(s) 309, 418
MwoI GCNNNNNNNGC 6 cut(s) 147, 222, 234, 315, 324, 333
NciI CCSGG 1 cut(s) 267
NdeII GATC 3 cut(s) 278, 343, 562
NlaIII CATG 1 cut(s) 134
NmeAIII GCCGAG 4 cut(s) 123, 275, 353, 362
NmuCI GTSAC 3 cut(s) 253, 366, 438
NsiI ATGCAT 1 cut(s) 636
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PdmI GAANNNNTTC 1 cut(s) 479
PleI GAGTC 2 cut(s) 260, 445
PpsI GAGTC 2 cut(s) 260, 445
Psp6I CCWGG 1 cut(s) 199
PspFI CCCAGC 1 cut(s) 538
PspGI CCWGG 1 cut(s) 199
PspPI GGNCC 1 cut(s) 486
PstI CTGCAG 3 cut(s) 323, 555, 593
PstNI CAGNNNCTG 1 cut(s) 376
PsuI RGATCY 2 cut(s) 343, 562
PvuII CAGCTG 1 cut(s) 318
RsaI GTAC 1 cut(s) 19
RsaNI GTAC 1 cut(s) 18
Sau3AI GATC 3 cut(s) 278, 343, 562
Sau96I GGNCC 1 cut(s) 486
SchI GAGTC 2 cut(s) 261, 446
ScrFI CCNGG 2 cut(s) 201, 267
SfaNI GCATC 3 cut(s) 507, 621, 677
SfcI CTRYAG 3 cut(s) 319, 551, 589
SinI GGWCC 1 cut(s) 486
SspMI CTAG 1 cut(s) 566
StyD4I CCNGG 2 cut(s) 199, 265
TaaI ACNGT 1 cut(s) 499
TaiI ACGT 1 cut(s) 368
TaqI TCGA 1 cut(s) 183
TatI WGTACW 1 cut(s) 17
TauI GCSGC 7 cut(s) 221, 228, 291, 294, 416, 421, 465
TscAI CASTG 2 cut(s) 27, 301
TseFI GTSAC 3 cut(s) 253, 366, 438
TseI GCWGC 9 cut(s) 134, 147, 228, 318, 321, 324, 410, 465, 550
Tsp45I GTSAC 3 cut(s) 253, 366, 438
TspRI CASTG 2 cut(s) 27, 301
VpaK11BI GGWCC 1 cut(s) 486
XbaI TCTAGA 1 cut(s) 565
XcmI CCANNNNNNNNNTGG 1 cut(s) 496
XmiI GTMKAC 1 cut(s) 108
XmnI GAANNNNTTC 1 cut(s) 479
XspI CTAG 1 cut(s) 566
ZraI GACGTC 1 cut(s) 366
Zsp2I ATGCAT 1 cut(s) 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.