FvH4_5g06191

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0010078
Physical Location & Seq
Reverse (-)
3641174 .. 3645767
4594 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g06191.t1

Sequence Viewer

Length: 552 bp
ATGGCTGCCCGTGATGAATTTTCGCAATTTGGGGCTGATTTTGAGTTCATGAGAGCAGTTCTAATTTGCGATCTCAGATTCTTCAACGCCGACGTTGGCTCAGGCTTCCTCGGAGGGTATCGATGGCGACAGCTGGAGCTGGATCTTCAGAGCATGCTATGGTGGGTGTTGGAGTTGGATCTCGTCTCCGTCATCTCAGCGCTATCCAGGCTTTATAGAGGCGTCTTCGAGGCGGCAACACCGATCTCATTCTTCTTCTTCTACTCTCATCTCACCATCTTATCTGTAATTCCTAATAGCCTCATATATTTCACCACCATGGAAACACAAAACGACGACGTCTCTTCATGGAGCTCCGCTACGAATTGGTCCGTCGCCGGTGGCGCTCTCGTAGATCGCATCACCTTCGAGTCCTTCTTGTCTCCGATCGACGGCGACGCTCCAAATTGCACCGCCGGATCCTCCCTTATTCTTCACCCTCCATCACCAGATTCTGGACCTTGCGAGATCTTATACCCTTTCCTATTTTCATCATTCATAGGACTGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

20.42

Weight (kDa)

4.22

Isoelectric Point (pI)

39.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010078)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47940
fragaria_vesca FvH4_5g06191 FvH4_7g01170 FvH4_7g01170 FvH4_7g01170
malus_domestica MD00G1112200.v1.1 MD02G1309200.v1.1 MD07G1012500.v1.1
prunus_persica Prupe.2G015000_v2.0.a1
pyrus_communis pycom02g26050 pycom07g01030
rosa_chinensis RchiOBHm_Chr1g0316471
rosa_laevigata RLG00000030670
rosa_multiflora Rmu_sc0006790.1_g000005
rosa_roxburghii Rroxscaffold_4G00330970
rosa_rugosa Rorug01G0011100
rosa_samantha Rh1AG020600 Rh1BG015900 Rh1CG018900 Rh1DG016000
rosa_wichuraiana Rw1G001350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 342
AccB7I CCANNNNNTGG 1 cut(s) 494
AciI CCGC 3 cut(s) 233, 357, 453
AclWI GGATC 4 cut(s) 150, 186, 453, 466
AcsI RAATTY 1 cut(s) 17
AcuI CTGAAG 1 cut(s) 131
AcyI GRCGYC 2 cut(s) 222, 339
AfeI AGCGCT 1 cut(s) 201
AfiI CCNNNNNNNGG 2 cut(s) 431, 494
AgsI TTSAA 1 cut(s) 85
AjnI CCWGG 1 cut(s) 206
AluBI AGCT 3 cut(s) 133, 139, 354
AluI AGCT 3 cut(s) 133, 139, 354
Alw21I GWGCWC 1 cut(s) 356
Alw26I GTCTC 3 cut(s) 190, 346, 426
AlwI GGATC 4 cut(s) 150, 186, 453, 466
AlwNI CAGNNNCTG 1 cut(s) 494
Aor51HI AGCGCT 1 cut(s) 201
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 17
AspLEI GCGC 2 cut(s) 202, 386
AspS9I GGNCC 2 cut(s) 369, 497
AsuHPI GGTGA 5 cut(s) 265, 304, 394, 467, 477
AvaII GGWCC 2 cut(s) 369, 497
BamHI GGATCC 1 cut(s) 458
BanII GRGCYC 1 cut(s) 356
BbsI GAAGAC 1 cut(s) 217
Bbv12I GWGCWC 1 cut(s) 356
BccI CCATC 3 cut(s) 117, 284, 490
BceAI ACGGC 1 cut(s) 448
BcgI CGANNNNNNTGC 2 cut(s) 388, 422
BciT130I CCWGG 1 cut(s) 208
BcoDI GTCTC 3 cut(s) 190, 346, 426
BfoI RGCGCY 2 cut(s) 203, 387
BglII AGATCT 1 cut(s) 507
BisI GCNGC 2 cut(s) 6, 234
BlsI GCNGC 2 cut(s) 7, 235
Bme1390I CCNGG 1 cut(s) 208
Bme18I GGWCC 2 cut(s) 369, 497
BmgT120I GGNCC 2 cut(s) 369, 497
BmiI GGNNCC 1 cut(s) 460
BmrFI CCNGG 1 cut(s) 208
BmsI GCATC 1 cut(s) 408
BpiI GAAGAC 1 cut(s) 217
BpmI CTGGAG 1 cut(s) 155
Bpu10I CCTNAGC 1 cut(s) 100
Bsa29I ATCGAT 1 cut(s) 121
BsaHI GRCGYC 2 cut(s) 222, 339
BsaJI CCNNGG 2 cut(s) 109, 318
Bsc4I CCNNNNNNNGG 2 cut(s) 431, 494
Bse118I RCCGGY 1 cut(s) 377
BseBI CCWGG 1 cut(s) 208
BseCI ATCGAT 1 cut(s) 121
BseDI CCNNGG 2 cut(s) 109, 318
BseLI CCNNNNNNNGG 2 cut(s) 431, 494
BseMII CTCAG 3 cut(s) 88, 114, 210
Bsh1285I CGRYCG 1 cut(s) 429
BshVI ATCGAT 1 cut(s) 121
BsiEI CGRYCG 1 cut(s) 429
BsiHKAI GWGCWC 1 cut(s) 356
BsiSI CCGG 2 cut(s) 378, 456
BslI CCNNNNNNNGG 2 cut(s) 431, 494
BsmAI GTCTC 3 cut(s) 190, 346, 426
BsmBI CGTCTC 2 cut(s) 190, 346
Bsp1286I GDGCHC 1 cut(s) 356
Bsp143I GATC 8 cut(s) 70, 142, 178, 243, 394, 426, 458, 507
Bsp19I CCATGG 1 cut(s) 318
BspACI CCGC 3 cut(s) 233, 357, 453
BspCNI CTCAG 3 cut(s) 87, 113, 209
BspDI ATCGAT 1 cut(s) 121
BspHI TCATGA 1 cut(s) 48
BspLI GGNNCC 1 cut(s) 460
BspPI GGATC 4 cut(s) 150, 186, 453, 466
BsrFI RCCGGY 1 cut(s) 377
BssAI RCCGGY 1 cut(s) 377
BssECI CCNNGG 2 cut(s) 109, 318
BssMI GATC 8 cut(s) 70, 142, 178, 243, 394, 426, 458, 507
BssNI GRCGYC 2 cut(s) 222, 339
BssT1I CCWWGG 1 cut(s) 318
Bst2UI CCWGG 1 cut(s) 208
Bst6I CTCTTC 1 cut(s) 349
BstACI GRCGYC 2 cut(s) 222, 339
BstC8I GCNNGC 1 cut(s) 155
BstDEI CTNAG 3 cut(s) 74, 100, 196
BstDSI CCRYGG 1 cut(s) 318
BstH2I RGCGCY 2 cut(s) 203, 387
BstHHI GCGC 2 cut(s) 202, 386
BstKTI GATC 8 cut(s) 73, 145, 181, 246, 397, 429, 461, 510
BstMAI GTCTC 3 cut(s) 190, 346, 426
BstMBI GATC 8 cut(s) 70, 142, 178, 243, 394, 426, 458, 507
BstMCI CGRYCG 1 cut(s) 429
BstMWI GCNNNNNNNGC 2 cut(s) 208, 383
BstNI CCWGG 1 cut(s) 208
BstNSI RCATGY 1 cut(s) 157
BstSCI CCNGG 1 cut(s) 206
BstV2I GAAGAC 1 cut(s) 217
BstX2I RGATCY 4 cut(s) 142, 178, 458, 507
BstYI RGATCY 4 cut(s) 142, 178, 458, 507
Bsu15I ATCGAT 1 cut(s) 121
BsuTUI ATCGAT 1 cut(s) 121
BtgI CCRYGG 1 cut(s) 318
Cac8I GCNNGC 1 cut(s) 155
CaiI CAGNNNCTG 1 cut(s) 494
CciI TCATGA 1 cut(s) 48
CfoI GCGC 2 cut(s) 202, 386
Cfr10I RCCGGY 1 cut(s) 377
Cfr13I GGNCC 2 cut(s) 369, 497
ClaI ATCGAT 1 cut(s) 121
CseI GACGC 2 cut(s) 211, 446
CviAII CATG 4 cut(s) 49, 154, 319, 348
CviJI RGCY 9 cut(s) 5, 35, 99, 105, 133, 139, 211, 300, 354
CviKI_1 RGCY 9 cut(s) 5, 35, 99, 105, 133, 139, 211, 300, 354
DdeI CTNAG 3 cut(s) 74, 100, 196
DpnI GATC 8 cut(s) 72, 144, 180, 245, 396, 428, 460, 509
DpnII GATC 8 cut(s) 70, 142, 178, 243, 394, 426, 458, 507
Eam1104I CTCTTC 1 cut(s) 349
EarI CTCTTC 1 cut(s) 349
Ecl136II GAGCTC 1 cut(s) 354
Eco130I CCWWGG 1 cut(s) 318
Eco24I GRGCYC 1 cut(s) 356
Eco47I GGWCC 2 cut(s) 369, 497
Eco47III AGCGCT 1 cut(s) 201
Eco53kI GAGCTC 1 cut(s) 354
Eco57I CTGAAG 1 cut(s) 131
EcoICRI GAGCTC 1 cut(s) 354
EcoRII CCWGG 1 cut(s) 206
EcoT14I CCWWGG 1 cut(s) 318
EcoT38I GRGCYC 1 cut(s) 356
ErhI CCWWGG 1 cut(s) 318
Esp3I CGTCTC 2 cut(s) 190, 346
FaeI CATG 4 cut(s) 52, 157, 322, 351
FatI CATG 4 cut(s) 48, 153, 318, 347
Fnu4HI GCNGC 2 cut(s) 6, 234
FriOI GRGCYC 1 cut(s) 356
Fsp4HI GCNGC 2 cut(s) 6, 234
GlaI GCGC 2 cut(s) 201, 385
GluI GCNGC 2 cut(s) 6, 234
GsuI CTGGAG 1 cut(s) 155
HaeII RGCGCY 2 cut(s) 203, 387
HapII CCGG 2 cut(s) 378, 456
HgaI GACGC 2 cut(s) 211, 446
HhaI GCGC 2 cut(s) 202, 386
Hin1I GRCGYC 2 cut(s) 222, 339
Hin1II CATG 4 cut(s) 52, 157, 322, 351
Hin6I GCGC 2 cut(s) 200, 384
HinP1I GCGC 2 cut(s) 200, 384
HinfI GANTC 3 cut(s) 78, 410, 491
HpaII CCGG 2 cut(s) 378, 456
HphI GGTGA 5 cut(s) 265, 304, 394, 467, 477
Hpy188I TCNGA 4 cut(s) 77, 113, 150, 426
Hpy188III TCNNGA 2 cut(s) 49, 495
Hpy99I CGWCG 6 cut(s) 95, 338, 341, 377, 434, 440
HpyAV CCTTC 2 cut(s) 415, 424
HpyCH4IV ACGT 2 cut(s) 93, 339
HpyCH4V TGCA 1 cut(s) 450
HpyF10VI GCNNNNNNNGC 2 cut(s) 208, 383
HpyF3I CTNAG 3 cut(s) 74, 100, 196
HpySE526I ACGT 2 cut(s) 93, 339
Hsp92I GRCGYC 2 cut(s) 222, 339
Hsp92II CATG 4 cut(s) 52, 157, 322, 351
HspAI GCGC 2 cut(s) 200, 384
Kzo9I GATC 8 cut(s) 70, 142, 178, 243, 394, 426, 458, 507
LmnI GCTCC 4 cut(s) 136, 351, 359, 445
LpnPI CCDG 9 cut(s) 87, 119, 125, 193, 220, 391, 469, 480, 501
LweI GCATC 1 cut(s) 408
MaeII ACGT 2 cut(s) 93, 339
MalI GATC 8 cut(s) 72, 144, 180, 245, 396, 428, 460, 509
MboI GATC 8 cut(s) 70, 142, 178, 243, 394, 426, 458, 507
MboII GAAGA 8 cut(s) 73, 137, 217, 244, 247, 250, 336, 464
MflI RGATCY 4 cut(s) 142, 178, 458, 507
MhlI GDGCHC 1 cut(s) 356
MluCI AATT 6 cut(s) 17, 26, 63, 288, 364, 445
MlyI GAGTC 1 cut(s) 419
MmeI TCCRAC 2 cut(s) 150, 156
MnlI CCTC 7 cut(s) 107, 119, 212, 223, 311, 472, 489
MslI CAYNNNNRTG 1 cut(s) 317
MspA1I CMGCKG 1 cut(s) 133
MspI CCGG 2 cut(s) 378, 456
MspR9I CCNGG 1 cut(s) 208
MvaI CCWGG 1 cut(s) 208
MwoI GCNNNNNNNGC 2 cut(s) 208, 383
NcoI CCATGG 1 cut(s) 318
NdeII GATC 8 cut(s) 70, 142, 178, 243, 394, 426, 458, 507
NlaIII CATG 4 cut(s) 52, 157, 322, 351
NlaIV GGNNCC 1 cut(s) 460
NspI RCATGY 1 cut(s) 157
PaeI GCATGC 1 cut(s) 157
PagI TCATGA 1 cut(s) 48
PfeI GAWTC 2 cut(s) 78, 491
PflFI GACNNNGTC 1 cut(s) 338
PflMI CCANNNNNTGG 1 cut(s) 494
PkrI GCNGC 2 cut(s) 7, 235
Ple19I CGATCG 1 cut(s) 429
PleI GAGTC 1 cut(s) 418
PpsI GAGTC 1 cut(s) 418
Psp124BI GAGCTC 1 cut(s) 356
Psp6I CCWGG 1 cut(s) 206
PspGI CCWGG 1 cut(s) 206
PspN4I GGNNCC 1 cut(s) 460
PspPI GGNCC 2 cut(s) 369, 497
PstNI CAGNNNCTG 1 cut(s) 494
PsuI RGATCY 4 cut(s) 142, 178, 458, 507
PsyI GACNNNGTC 1 cut(s) 338
PvuI CGATCG 1 cut(s) 429
PvuII CAGCTG 1 cut(s) 133
RseI CAYNNNNRTG 1 cut(s) 317
SacI GAGCTC 1 cut(s) 356
SatI GCNGC 2 cut(s) 6, 234
Sau3AI GATC 8 cut(s) 70, 142, 178, 243, 394, 426, 458, 507
Sau96I GGNCC 2 cut(s) 369, 497
SchI GAGTC 1 cut(s) 419
ScrFI CCNGG 1 cut(s) 208
SduI GDGCHC 1 cut(s) 356
SetI ASST 7 cut(s) 96, 135, 141, 342, 356, 407, 502
SfaNI GCATC 1 cut(s) 408
SgrAI CRCCGGYG 1 cut(s) 377
SinI GGWCC 2 cut(s) 369, 497
SmiMI CAYNNNNRTG 1 cut(s) 317
SphI GCATGC 1 cut(s) 157
Sse9I AATT 6 cut(s) 17, 26, 63, 288, 364, 445
SsiI CCGC 3 cut(s) 233, 357, 453
SstI GAGCTC 1 cut(s) 356
StyD4I CCNGG 1 cut(s) 206
StyI CCWWGG 1 cut(s) 318
TaiI ACGT 2 cut(s) 96, 342
TaqI TCGA 4 cut(s) 121, 228, 408, 429
TasI AATT 6 cut(s) 17, 26, 63, 288, 364, 445
TauI GCSGC 1 cut(s) 236
TfiI GAWTC 2 cut(s) 78, 491
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 5 cut(s) 30, 37, 336, 519, 526
TspGWI ACGGA 2 cut(s) 178, 361
Tth111I GACNNNGTC 1 cut(s) 338
Van91I CCANNNNNTGG 1 cut(s) 494
VpaK11BI GGWCC 2 cut(s) 369, 497
XapI RAATTY 1 cut(s) 17
XceI RCATGY 1 cut(s) 157
ZraI GACGTC 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.