Rorug01G0011100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0010078
Physical Location & Seq
Forward (+)
1896133 .. 1898210
2078 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0011100.1

Sequence Viewer

Length: 1200 bp
ATGCAAAGTGCCAATTCATCAAATCTGATAATATGTATTTATACAACGGCTGTATGTTGGGGAGTGGGAGAAGAGTGCAAGGTGGAAGAGATACAGGTAGAGCCACCACAGAAGTTTGAAGTTCGTGTCAAGATGCTCTATGCCAGTCTCTGTCACACTGACATCCTCATGTCCAAAGGACGCCCAATTCCTCTTTTCCCTCGCGTTCTTGGACATGAGGGCGTCGGTGTGGTAGAGAGCGTCAGAGAAGAAGTAAACGCAGAGGATTTCAAACAAGGAGACATCGTGATACCAACGTATGTTTCAGAATGCCAAGAATGCGAGAATTGCTTGTCAGGGTCAGGCAAGTCCAACCTGTGCCTGAAATATCCGTTTACCTGGAGCGGTCTAATGCTCGATGGTACTTCAAGAATGTCGACTGTCAAGGGACAAAAGATGCTGTACCACCTCTTTTCTTGCTCCACATGGTCCGAGTACATGGTCGTTAACGTCAATTTCCTTGTCAAGCTCCACAAATGGGGTCCTCATCGTACTACTTCACCACCTCTGTCCCACGCTAGCTTCCTCTCATGTGGATTCTCTACCGGATTTGGGGCTCCTTGGAAGGAAGCTAAGATTGAAAGAGGGTCAACTGTTGCTGTTATTGGTCTTGGTGCTGTTGGATTAGGGGCAGTTGAGGGGGCTAGAATGCAAGGTGCATCTAGGATAATCGGTGTCGACAAAAATGAGATGAAAAGAGAAAAAGGAATAGCTTTTGGAATGACTGATTTTATAAACCCTGACAATCACCAATCTGAACATGATCAAGATCATGACAAATCAGTTTCTAAGCTCATCAAAGACTCTACAGATGGAATGGATGTAGATTATTGCTTTGAGTGCACTGGCGTTGCATCCTTCATCAATGAAGCCCTTGGAGCCACAAAAATGGGTAAAGGAACAGCTGTTGTGATAGGAGGCTCAGGTGTAACAACCGTTCAAATTGATTTTCTCTCCCTGATGAGCGGCAGAACCTTGAAAGGGTCCATGTTTGGAGGTCTCAAAGCCAAAACCGACCTTCCCATTCTCATCAACAAATGCATGAATATGGAAATGCAACTGGATGAACTCTTGACCCATGAAGTTCCTCTCGTAGATATTAACAAAGCATTTGAACTCTTAAAGCAGCCAGATTGTGTGAAGATTCTGATCAAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

399

Amino Acids

43.65

Weight (kDa)

5.97

Isoelectric Point (pI)

36.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 40 - 171 1.8e-18 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 219 - 350 3e-21 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010078)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47940
fragaria_vesca FvH4_5g06191 FvH4_7g01170 FvH4_7g01170 FvH4_7g01170
malus_domestica MD00G1112200.v1.1 MD02G1309200.v1.1 MD07G1012500.v1.1
prunus_persica Prupe.2G015000_v2.0.a1
pyrus_communis pycom02g26050 pycom07g01030
rosa_chinensis RchiOBHm_Chr1g0316471
rosa_laevigata RLG00000030670
rosa_multiflora Rmu_sc0006790.1_g000005
rosa_roxburghii Rroxscaffold_4G00330970
rosa_rugosa Rorug01G0011100
rosa_samantha Rh1AG020600 Rh1BG015900 Rh1CG018900 Rh1DG016000
rosa_wichuraiana Rw1G001350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 773
AccBSI CCGCTC 2 cut(s) 384, 1005
AccI GTMKAC 2 cut(s) 416, 717
AccII CGCG 1 cut(s) 204
AciI CCGC 2 cut(s) 384, 1005
AcyI GRCGYC 2 cut(s) 181, 222
AfaI GTAC 4 cut(s) 403, 443, 476, 532
AfiI CCNNNNNNNGG 3 cut(s) 517, 591, 1020
AgsI TTSAA 7 cut(s) 119, 271, 408, 620, 980, 1018, 1154
AjnI CCWGG 1 cut(s) 377
AjuI GAANNNNNNNTTGG 2 cut(s) 286, 318
AluBI AGCT 6 cut(s) 508, 561, 611, 752, 832, 944
AluI AGCT 6 cut(s) 508, 561, 611, 752, 832, 944
Alw21I GWGCWC 1 cut(s) 884
Alw26I GTCTC 3 cut(s) 152, 273, 1043
Alw44I GTGCAC 1 cut(s) 880
AlwNI CAGNNNCTG 1 cut(s) 150
ApaLI GTGCAC 1 cut(s) 880
ApeKI GCWGC 1 cut(s) 1165
AspS9I GGNCC 3 cut(s) 468, 521, 1023
AsuHPI GGTGA 2 cut(s) 531, 779
AsuNHI GCTAGC 1 cut(s) 557
AvaII GGWCC 3 cut(s) 468, 521, 1023
BaeGI GKGCMC 1 cut(s) 884
BaeI ACNNNNGTAYC 2 cut(s) 281, 314
BanII GRGCYC 1 cut(s) 598
Bbv12I GWGCWC 1 cut(s) 884
BbvI GCAGC 1 cut(s) 1177
BccI CCATC 2 cut(s) 392, 845
BceAI ACGGC 1 cut(s) 63
BciT130I CCWGG 1 cut(s) 379
BclI TGATCA 2 cut(s) 802, 1188
BcoDI GTCTC 3 cut(s) 152, 273, 1043
BfaI CTAG 3 cut(s) 558, 684, 702
BfmI CTRYAG 1 cut(s) 846
BisI GCNGC 2 cut(s) 1006, 1166
BlsI GCNGC 2 cut(s) 1007, 1167
Bme1390I CCNGG 1 cut(s) 379
Bme18I GGWCC 3 cut(s) 468, 521, 1023
BmgT120I GGNCC 3 cut(s) 468, 521, 1023
BmiI GGNNCC 4 cut(s) 522, 597, 919, 1024
BmrFI CCNGG 1 cut(s) 379
BmsI GCATC 4 cut(s) 123, 426, 707, 902
BmtI GCTAGC 1 cut(s) 561
BpmI CTGGAG 1 cut(s) 400
Bpu10I CCTNAGC 1 cut(s) 961
BsaBI GATNNNNATC 2 cut(s) 807, 1187
BsaHI GRCGYC 2 cut(s) 181, 222
BsaI GGTCTC 1 cut(s) 1043
BsaJI CCNNGG 2 cut(s) 599, 913
BsaWI WCCGGW 1 cut(s) 584
BsaXI ACNNNNNCTCC 2 cut(s) 270, 300
Bsc4I CCNNNNNNNGG 3 cut(s) 517, 591, 1020
Bse1I ACTGG 3 cut(s) 144, 889, 1104
Bse8I GATNNNNATC 2 cut(s) 807, 1187
BseBI CCWGG 1 cut(s) 379
BseDI CCNNGG 2 cut(s) 599, 913
BseGI GGATG 4 cut(s) 162, 865, 893, 1108
BseJI GATNNNNATC 2 cut(s) 807, 1187
BseLI CCNNNNNNNGG 3 cut(s) 517, 591, 1020
BseMII CTCAG 1 cut(s) 975
BseNI ACTGG 3 cut(s) 144, 889, 1104
BseSI GKGCMC 1 cut(s) 884
BseXI GCAGC 1 cut(s) 1177
Bsh1236I CGCG 1 cut(s) 204
BsiHKAI GWGCWC 1 cut(s) 884
BsiSI CCGG 1 cut(s) 585
BslFI GGGAC 2 cut(s) 441, 535
BslI CCNNNNNNNGG 3 cut(s) 517, 591, 1020
BsmAI GTCTC 3 cut(s) 152, 273, 1043
BsmFI GGGAC 2 cut(s) 441, 535
BsmI GAATGC 3 cut(s) 314, 323, 693
Bso31I GGTCTC 1 cut(s) 1043
Bsp1286I GDGCHC 2 cut(s) 598, 884
Bsp143I GATC 3 cut(s) 802, 808, 1188
BspACI CCGC 2 cut(s) 384, 1005
BspCNI CTCAG 1 cut(s) 974
BspFNI CGCG 1 cut(s) 204
BspHI TCATGA 1 cut(s) 811
BspLI GGNNCC 4 cut(s) 522, 597, 919, 1024
BspOI GCTAGC 1 cut(s) 561
BspTNI GGTCTC 1 cut(s) 1043
BsrBI CCGCTC 2 cut(s) 384, 1005
BsrI ACTGG 3 cut(s) 144, 889, 1104
BssECI CCNNGG 2 cut(s) 599, 913
BssMI GATC 3 cut(s) 802, 808, 1188
BssNI GRCGYC 2 cut(s) 181, 222
BssT1I CCWWGG 2 cut(s) 599, 913
Bst2UI CCWGG 1 cut(s) 379
Bst4CI ACNGT 3 cut(s) 421, 634, 976
Bst6I CTCTTC 2 cut(s) 66, 81
BstACI GRCGYC 2 cut(s) 181, 222
BstC8I GCNNGC 1 cut(s) 559
BstDEI CTNAG 3 cut(s) 612, 828, 961
BstF5I GGATG 4 cut(s) 162, 865, 893, 1108
BstFNI CGCG 1 cut(s) 204
BstKTI GATC 3 cut(s) 805, 811, 1191
BstMAI GTCTC 3 cut(s) 152, 273, 1043
BstMBI GATC 3 cut(s) 802, 808, 1188
BstMWI GCNNNNNNNGC 4 cut(s) 318, 327, 879, 917
BstNI CCWGG 1 cut(s) 379
BstSCI CCNGG 1 cut(s) 377
BstSFI CTRYAG 1 cut(s) 846
BstSLI GKGCMC 1 cut(s) 884
BstUI CGCG 1 cut(s) 204
BstV1I GCAGC 1 cut(s) 1177
BstXI CCANNNNNNTGG 1 cut(s) 928
BtsCI GGATG 4 cut(s) 162, 865, 893, 1108
BtsIMutI CAGTG 2 cut(s) 156, 882
Cac8I GCNNGC 1 cut(s) 559
CaiI CAGNNNCTG 1 cut(s) 150
CciI TCATGA 1 cut(s) 811
Cfr13I GGNCC 3 cut(s) 468, 521, 1023
CseI GACGC 3 cut(s) 189, 211, 229
Csp6I GTAC 4 cut(s) 402, 442, 475, 531
CviQI GTAC 4 cut(s) 402, 442, 475, 531
DdeI CTNAG 3 cut(s) 612, 828, 961
DpnI GATC 3 cut(s) 804, 810, 1190
DpnII GATC 3 cut(s) 802, 808, 1188
Eam1104I CTCTTC 2 cut(s) 66, 81
EarI CTCTTC 2 cut(s) 66, 81
Eco130I CCWWGG 2 cut(s) 599, 913
Eco24I GRGCYC 1 cut(s) 598
Eco31I GGTCTC 1 cut(s) 1043
Eco47I GGWCC 3 cut(s) 468, 521, 1023
EcoO109I RGGNCCY 1 cut(s) 521
EcoRII CCWGG 1 cut(s) 377
EcoT14I CCWWGG 2 cut(s) 599, 913
EcoT22I ATGCAT 1 cut(s) 1082
EcoT38I GRGCYC 1 cut(s) 598
ErhI CCWWGG 2 cut(s) 599, 913
FaqI GGGAC 2 cut(s) 441, 535
FbaI TGATCA 2 cut(s) 802, 1188
FblI GTMKAC 2 cut(s) 416, 717
Fnu4HI GCNGC 2 cut(s) 1006, 1166
FokI GGATG 4 cut(s) 149, 872, 880, 1115
FriOI GRGCYC 1 cut(s) 598
Fsp4HI GCNGC 2 cut(s) 1006, 1166
FspBI CTAG 3 cut(s) 558, 684, 702
GluI GCNGC 2 cut(s) 1006, 1166
GsuI CTGGAG 1 cut(s) 400
HapII CCGG 1 cut(s) 585
HgaI GACGC 3 cut(s) 189, 211, 229
Hin1I GRCGYC 2 cut(s) 181, 222
HincII GTYRAC 4 cut(s) 417, 487, 630, 718
HindII GTYRAC 4 cut(s) 417, 487, 630, 718
HinfI GANTC 3 cut(s) 576, 842, 1183
HpaI GTTAAC 1 cut(s) 487
HpaII CCGG 1 cut(s) 585
HphI GGTGA 2 cut(s) 531, 779
Hpy166II GTNNAC 7 cut(s) 256, 375, 417, 487, 630, 718, 882
Hpy188I TCNGA 6 cut(s) 27, 245, 307, 472, 796, 1188
Hpy188III TCNNGA 7 cut(s) 130, 286, 408, 806, 812, 1111, 1192
Hpy8I GTNNAC 7 cut(s) 256, 375, 417, 487, 630, 718, 882
Hpy99I CGWCG 1 cut(s) 227
HpyAV CCTTC 3 cut(s) 598, 907, 1067
HpyCH4III ACNGT 3 cut(s) 421, 634, 976
HpyCH4IV ACGT 2 cut(s) 296, 489
HpyCH4V TGCA 8 cut(s) 4, 78, 691, 698, 882, 893, 1080, 1096
HpyF10VI GCNNNNNNNGC 4 cut(s) 318, 327, 879, 917
HpyF3I CTNAG 3 cut(s) 612, 828, 961
HpySE526I ACGT 2 cut(s) 296, 489
Hsp92I GRCGYC 2 cut(s) 181, 222
Ksp22I TGATCA 2 cut(s) 802, 1188
KspAI GTTAAC 1 cut(s) 487
Kzo9I GATC 3 cut(s) 802, 808, 1188
LmnI GCTCC 5 cut(s) 381, 464, 513, 601, 917
Lsp1109I GCAGC 1 cut(s) 1177
LweI GCATC 4 cut(s) 123, 426, 707, 902
MaeI CTAG 3 cut(s) 558, 684, 702
MaeII ACGT 2 cut(s) 296, 489
MaeIII GTNAC 2 cut(s) 152, 967
MalI GATC 3 cut(s) 804, 810, 1190
MbiI CCGCTC 2 cut(s) 384, 1005
MboI GATC 3 cut(s) 802, 808, 1188
MboII GAAGA 4 cut(s) 83, 98, 260, 1192
MhlI GDGCHC 2 cut(s) 598, 884
MluCI AATT 5 cut(s) 13, 186, 325, 493, 981
MlyI GAGTC 1 cut(s) 836
MmeI TCCRAC 2 cut(s) 375, 640
Mph1103I ATGCAT 1 cut(s) 1082
MseI TTAA 3 cut(s) 486, 1140, 1160
MslI CAYNNNNRTG 3 cut(s) 167, 926, 1085
MspA1I CMGCKG 1 cut(s) 944
MspI CCGG 1 cut(s) 585
MspR9I CCNGG 1 cut(s) 379
Mva1269I GAATGC 3 cut(s) 314, 323, 693
MvaI CCWGG 1 cut(s) 379
MvnI CGCG 1 cut(s) 204
MwoI GCNNNNNNNGC 4 cut(s) 318, 327, 879, 917
NdeII GATC 3 cut(s) 802, 808, 1188
NheI GCTAGC 1 cut(s) 557
NlaIV GGNNCC 4 cut(s) 522, 597, 919, 1024
NmuCI GTSAC 1 cut(s) 152
NsiI ATGCAT 1 cut(s) 1082
PagI TCATGA 1 cut(s) 811
PctI GAATGC 3 cut(s) 314, 323, 693
PfeI GAWTC 2 cut(s) 576, 1183
PkrI GCNGC 2 cut(s) 1007, 1167
PleI GAGTC 1 cut(s) 836
PpsI GAGTC 1 cut(s) 836
PpuMI RGGWCCY 1 cut(s) 521
PsiI TTATAA 1 cut(s) 773
Psp5II RGGWCCY 1 cut(s) 521
Psp6I CCWGG 1 cut(s) 377
PspGI CCWGG 1 cut(s) 377
PspN4I GGNNCC 4 cut(s) 522, 597, 919, 1024
PspPI GGNCC 3 cut(s) 468, 521, 1023
PspPPI RGGWCCY 1 cut(s) 521
PsrI GAACNNNNNNTAC 2 cut(s) 960, 992
PstNI CAGNNNCTG 1 cut(s) 150
PvuII CAGCTG 1 cut(s) 944
RsaI GTAC 4 cut(s) 403, 443, 476, 532
RsaNI GTAC 4 cut(s) 402, 442, 475, 531
RseI CAYNNNNRTG 3 cut(s) 167, 926, 1085
SalI GTCGAC 2 cut(s) 415, 716
SaqAI TTAA 3 cut(s) 486, 1140, 1160
SatI GCNGC 2 cut(s) 1006, 1166
Sau3AI GATC 3 cut(s) 802, 808, 1188
Sau96I GGNCC 3 cut(s) 468, 521, 1023
SchI GAGTC 1 cut(s) 836
ScrFI CCNGG 1 cut(s) 379
SduI GDGCHC 2 cut(s) 598, 884
SfaNI GCATC 4 cut(s) 123, 426, 707, 902
SfcI CTRYAG 1 cut(s) 846
SinI GGWCC 3 cut(s) 468, 521, 1023
SmiMI CAYNNNNRTG 3 cut(s) 167, 926, 1085
Sse9I AATT 5 cut(s) 13, 186, 325, 493, 981
SsiI CCGC 2 cut(s) 384, 1005
SspMI CTAG 3 cut(s) 558, 684, 702
StyD4I CCNGG 1 cut(s) 377
StyI CCWWGG 2 cut(s) 599, 913
TaaI ACNGT 3 cut(s) 421, 634, 976
TaiI ACGT 2 cut(s) 299, 492
TaqI TCGA 3 cut(s) 396, 416, 717
TasI AATT 5 cut(s) 13, 186, 325, 493, 981
TatI WGTACW 1 cut(s) 474
TauI GCSGC 1 cut(s) 1008
TfiI GAWTC 2 cut(s) 576, 1183
Tru1I TTAA 3 cut(s) 486, 1140, 1160
Tru9I TTAA 3 cut(s) 486, 1140, 1160
TscAI CASTG 2 cut(s) 163, 889
TseFI GTSAC 1 cut(s) 152
TseI GCWGC 1 cut(s) 1165
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 7 cut(s) 6, 746, 889, 921, 1097, 1119, 1134
TspGWI ACGGA 1 cut(s) 360
TspRI CASTG 2 cut(s) 163, 889
VneI GTGCAC 1 cut(s) 880
VpaK11BI GGWCC 3 cut(s) 468, 521, 1023
XmiI GTMKAC 2 cut(s) 416, 717
XspI CTAG 3 cut(s) 558, 684, 702
Zsp2I ATGCAT 1 cut(s) 1082
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.