Rh1DG016000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
2698202 .. 2703109
4908 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG016000.1

Sequence Viewer

Length: 1905 bp
ATGAGTGATGTAAATCCTTGTATATCTCTAACACTTCGTCTACTGTCACTTGAGAGGAAAGATTGTGTTTATGTTGATGAAATCTATGTGTTTGCTGATCCTGCTGATTCGGTGGATTTGGAAAACCAAGCGAGTACAGCGGAAAGCTCAGCTGGAAGCTCTCTCATGGCCATGTTTATGCCTACCCTCTTGCAATTATCTAAAACAAGGAGTGTTAACCCAACCCAAGACTCCCAAGAGATTGGTTCAAAAGCATCTGATTCTACCAGTGTTGCAACTAAGATCCAGACAGATATTAAACCCAGCATATCTGATCATCAAGAAGTAAAGTTTCTGGATGTGAGTAGGGATACATTTTGTAGCACCCAATCACAGATCCCTCTAGAGGTTCCTGTTACAGAAAGCAAATCTGATACTGCATATCAGCATGTTGAAAGATCTATGGACCTGCTTTTTTCTCGAATGGGCAGAATAGAGGATTTATTATTGAGGTTTGAAGACAAAATGGTAAAGCCCATAAGCAGCATTGAGGCAAGGCTTGAGAGGGTAGAGCAGCAACTTGAAGTACTCAGCAAACAATCACAGAATTCTGGATTATCAACATGCTCAAGATTCTGTGCTCCTTCTTTCTCATGCGTTGAGTCTGATTCCAACTCTTTCTACAACAGTGGAAATGACTATCCCAGTTGTGAGGCAGTTATATTAGGTAACAAGGATGCTCAATTTGAGGCACTCCCTACCACACCTTATGACATGTCTGATTCAGGAAATCCTTCAAAGTTGGTCCCAGGTCTAGTAGTAACTGCTCCTGAATTTTCAAGTGATGATGAGGAGGAGGAAGAGGATCAGTCATCAAGTCTAGTGATACATCCTTCAAAGAATACACCAAGGCCTGCTTTGACAATTGATTATGCCCTAGCATCTGCACTAGCTGGGTTCATGTCTCTGACTTCTACTCAGCCTCAGAAGTGTACTCAAACTTTTTCAGTTGAAGCTCCTGAGTTCTTAAATGAAGAAGATGGTAGCCCTGACACAAAAGCTTCAGCAAGAGTTGAAGAAATAGGGACAGAGCCATCCATGTGCTTTGATGAATCTGATGGGATACAAAATGTGAAAGATTCACTTGCTGATTCATCCAGAATTTCTTCATATAGTGAGGAGAATGTTGAAAGATCTAATGATGAGCACTCTGTTAAACCAGACGGAATTCATGTGCAGCACGAGCGTCATGAGGGCAGTGAAGAAGACAAACCTGATGGTAAGAGCTGTGAGAATGCAGTTGATCTGGCTAATCATGGCATGGCTCGAACTGATTTTTGTCAGATAACAGAAGAGATTGAGAATGGAGTAGTCATCACTGAGATGAGCAACATTGCCAACCCTGATAAAACTGATATTCCAAACGGGGTGCCTCAAAATGAGACTGATGATGGATTTAATAACACTCAGGATGATGCTAATACAAAGGAAGTGACAGAAGAGAATTCTGACAGACGTACGAAGGAAGTGACAGAAGAGAATTCTGACAAAGATGTTTTGAAGAATATCCTTGAATTCTCACGTGCTTCTTCTGTGGTGGATTTTGAAATTCCAGTGTTGGATGTGAAATTTACTTCTCTTGAAAGTTGCAGTGCCACTTGTTCTCTTGCAGCCCTTTTGTCTGGATCGCCGGAATCAATGACTGAAGCACCTTGTGTGAGGCAAAGTGATGATGTGCCCCCGGTTGGTGAGGAGTCTAGCTTGATTTTGGTGGAAGATCGGGAGCCGGTTGGTCCTGCTCCTGATGGTAATTTTTCTGTGGATATGGATTACTATAGTGTAGCAGAACCTTTGAGCACATGGGATGCGAATCTGCAGTGTGAAACATCCAATAGCCATGAGACTTTTGCTGCAAGTCTCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

634

Amino Acids

69.33

Weight (kDa)

4.21

Isoelectric Point (pI)

57.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010078)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 456
AccB1I GGYRCC 1 cut(s) 1408
AccI GTMKAC 1 cut(s) 40
AciI CCGC 1 cut(s) 140
AclWI GGATC 5 cut(s) 92, 277, 370, 852, 1672
AcoI YGGCCR 1 cut(s) 168
AcsI RAATTY 9 cut(s) 586, 812, 1140, 1206, 1483, 1519, 1553, 1587, 1607
AcuI CTGAAG 2 cut(s) 1026, 1704
AcvI CACGTG 1 cut(s) 1562
AdeI CACNNNGTG 1 cut(s) 1694
AfaI GTAC 4 cut(s) 136, 567, 973, 1498
AfiI CCNNNNNNNGG 2 cut(s) 385, 1724
AflIII ACRYGT 1 cut(s) 753
AjnI CCWGG 1 cut(s) 787
AluBI AGCT 8 cut(s) 147, 152, 159, 932, 995, 1040, 1266, 1740
AluI AGCT 8 cut(s) 147, 152, 159, 932, 995, 1040, 1266, 1740
Alw21I GWGCWC 3 cut(s) 622, 1188, 1838
Alw26I GTCTC 4 cut(s) 948, 1415, 1874, 1901
AlwI GGATC 5 cut(s) 92, 277, 370, 852, 1672
AoxI GGCC 2 cut(s) 168, 890
ApeKI GCWGC 5 cut(s) 522, 553, 1216, 1649, 1889
ApoI RAATTY 9 cut(s) 586, 812, 1140, 1206, 1483, 1519, 1553, 1587, 1607
Asp700I GAANNNNTTC 2 cut(s) 772, 1144
AspS9I GGNCC 3 cut(s) 445, 784, 1772
AsuC2I CCSGG 1 cut(s) 1721
AsuHPI GGTGA 1 cut(s) 1739
AvaII GGWCC 3 cut(s) 445, 784, 1772
BaeGI GKGCMC 1 cut(s) 1719
BalI TGGCCA 1 cut(s) 170
BanI GGYRCC 1 cut(s) 1408
BauI CACGAG 1 cut(s) 1220
BbrPI CACGTG 1 cut(s) 1562
BbsI GAAGAC 2 cut(s) 504, 1251
Bbv12I GWGCWC 3 cut(s) 622, 1188, 1838
BbvI GCAGC 5 cut(s) 534, 565, 1228, 1661, 1876
BccI CCATC 6 cut(s) 1013, 1081, 1091, 1250, 1424, 1778
BciT130I CCWGG 1 cut(s) 789
BciVI GTATCC 2 cut(s) 343, 1095
BclI TGATCA 1 cut(s) 313
BcnI CCSGG 1 cut(s) 1721
BcoDI GTCTC 4 cut(s) 948, 1415, 1874, 1901
BfaI CTAG 6 cut(s) 383, 794, 860, 917, 929, 1737
BfmI CTRYAG 2 cut(s) 1813, 1853
BfuAI ACCTGC 1 cut(s) 456
BfuI GTATCC 2 cut(s) 343, 1095
BglII AGATCT 2 cut(s) 437, 1172
BisI GCNGC 5 cut(s) 523, 554, 1217, 1650, 1890
BlpI GCTNAGC 1 cut(s) 148
BlsI GCNGC 5 cut(s) 524, 555, 1218, 1651, 1891
BmcAI AGTACT 1 cut(s) 567
Bme1390I CCNGG 2 cut(s) 789, 1721
Bme18I GGWCC 3 cut(s) 445, 784, 1772
BmgT120I GGNCC 3 cut(s) 445, 784, 1772
BmiI GGNNCC 4 cut(s) 390, 786, 1410, 1764
BmrFI CCNGG 2 cut(s) 789, 1721
BmrI ACTGGG 1 cut(s) 678
BmsI GCATC 5 cut(s) 263, 706, 929, 1444, 1834
BmuI ACTGGG 1 cut(s) 678
BpiI GAAGAC 2 cut(s) 504, 1251
Bpu1102I GCTNAGC 1 cut(s) 148
BpuEI CTTGAG 3 cut(s) 71, 560, 592
BpuMI CCSGG 1 cut(s) 1721
BsaAI YACGTR 1 cut(s) 1562
BsaBI GATNNNNATC 2 cut(s) 12, 1848
BsaJI CCNNGG 3 cut(s) 787, 887, 1719
Bsc4I CCNNNNNNNGG 2 cut(s) 385, 1724
Bse118I RCCGGY 1 cut(s) 1765
Bse1I ACTGG 3 cut(s) 267, 684, 1592
Bse3DI GCAATG 1 cut(s) 1371
Bse8I GATNNNNATC 2 cut(s) 12, 1848
BseBI CCWGG 1 cut(s) 789
BseDI CCNNGG 3 cut(s) 787, 887, 1719
BseGI GGATG 9 cut(s) 343, 721, 868, 1073, 1133, 1456, 1606, 1849, 1865
BseJI GATNNNNATC 2 cut(s) 12, 1848
BseLI CCNNNNNNNGG 2 cut(s) 385, 1724
BseMI GCAATG 1 cut(s) 1371
BseMII CTCAG 7 cut(s) 162, 583, 971, 977, 990, 1350, 1460
BseNI ACTGG 3 cut(s) 267, 684, 1592
BseRI GAGGAG 4 cut(s) 845, 848, 1172, 1745
BseSI GKGCMC 1 cut(s) 1719
BseXI GCAGC 5 cut(s) 534, 565, 1228, 1661, 1876
BseYI CCCAGC 2 cut(s) 302, 932
BsgI GTGCAG 2 cut(s) 909, 1235
BshFI GGCC 2 cut(s) 170, 892
BshNI GGYRCC 1 cut(s) 1408
BsiHKAI GWGCWC 3 cut(s) 622, 1188, 1838
BsiSI CCGG 3 cut(s) 1670, 1721, 1766
BsiWI CGTACG 1 cut(s) 1496
BslFI GGGAC 2 cut(s) 770, 1078
BslI CCNNNNNNNGG 2 cut(s) 385, 1724
BsmAI GTCTC 4 cut(s) 948, 1415, 1874, 1901
BsmFI GGGAC 2 cut(s) 770, 1078
BsmI GAATGC 1 cut(s) 1279
BsnI GGCC 2 cut(s) 170, 892
Bsp1286I GDGCHC 4 cut(s) 622, 1188, 1719, 1838
Bsp1720I GCTNAGC 1 cut(s) 148
BspACI CCGC 1 cut(s) 140
BspANI GGCC 2 cut(s) 170, 892
BspCNI CTCAG 7 cut(s) 161, 582, 970, 976, 991, 1351, 1459
BspHI TCATGA 1 cut(s) 1228
BspLI GGNNCC 4 cut(s) 390, 786, 1410, 1764
BspMAI CTGCAG 1 cut(s) 1857
BspMI ACCTGC 1 cut(s) 456
BspPI GGATC 5 cut(s) 92, 277, 370, 852, 1672
BspT107I GGYRCC 1 cut(s) 1408
BsrDI GCAATG 1 cut(s) 1371
BsrFI RCCGGY 1 cut(s) 1765
BsrI ACTGG 3 cut(s) 267, 684, 1592
BssAI RCCGGY 1 cut(s) 1765
BssECI CCNNGG 3 cut(s) 787, 887, 1719
BssSI CACGAG 1 cut(s) 1220
BssT1I CCWWGG 1 cut(s) 887
Bst2BI CACGAG 1 cut(s) 1220
Bst2UI CCWGG 1 cut(s) 789
Bst4CI ACNGT 2 cut(s) 45, 668
Bst6I CTCTTC 4 cut(s) 834, 1326, 1473, 1509
BstBAI YACGTR 1 cut(s) 1562
BstC8I GCNNGC 1 cut(s) 894
BstDEI CTNAG 8 cut(s) 148, 279, 569, 957, 963, 999, 1359, 1446
BstF5I GGATG 9 cut(s) 343, 721, 868, 1073, 1133, 1456, 1606, 1849, 1865
BstMAI GTCTC 4 cut(s) 948, 1415, 1874, 1901
BstMWI GCNNNNNNNGC 3 cut(s) 101, 137, 1222
BstNI CCWGG 1 cut(s) 789
BstNSI RCATGY 3 cut(s) 431, 606, 757
BstSCI CCNGG 2 cut(s) 787, 1719
BstSFI CTRYAG 2 cut(s) 1813, 1853
BstSLI GKGCMC 1 cut(s) 1719
BstV1I GCAGC 5 cut(s) 534, 565, 1228, 1661, 1876
BstV2I GAAGAC 2 cut(s) 504, 1251
BstX2I RGATCY 4 cut(s) 282, 375, 437, 1172
BstXI CCANNNNNNTGG 1 cut(s) 242
BstYI RGATCY 4 cut(s) 282, 375, 437, 1172
BsuI GTATCC 2 cut(s) 343, 1095
BsuRI GGCC 2 cut(s) 170, 892
BtsCI GGATG 9 cut(s) 343, 721, 868, 1073, 1133, 1456, 1606, 1849, 1865
BtsI GCAGTG 3 cut(s) 1243, 1636, 1862
BtsIMutI CAGTG 7 cut(s) 274, 673, 1243, 1356, 1599, 1636, 1862
BveI ACCTGC 1 cut(s) 456
Cac8I GCNNGC 1 cut(s) 894
CciI TCATGA 1 cut(s) 1228
Cfr10I RCCGGY 1 cut(s) 1765
Cfr13I GGNCC 3 cut(s) 445, 784, 1772
CseI GACGC 1 cut(s) 1214
Csp6I GTAC 4 cut(s) 135, 566, 972, 1497
CviQI GTAC 4 cut(s) 135, 566, 972, 1497
DdeI CTNAG 8 cut(s) 148, 279, 569, 957, 963, 999, 1359, 1446
DraIII CACNNNGTG 1 cut(s) 1694
EaeI YGGCCR 1 cut(s) 168
Eam1104I CTCTTC 4 cut(s) 834, 1326, 1473, 1509
EarI CTCTTC 4 cut(s) 834, 1326, 1473, 1509
Eco130I CCWWGG 1 cut(s) 887
Eco147I AGGCCT 1 cut(s) 892
Eco47I GGWCC 3 cut(s) 445, 784, 1772
Eco57I CTGAAG 2 cut(s) 1026, 1704
Eco72I CACGTG 1 cut(s) 1562
EcoRI GAATTC 5 cut(s) 586, 1206, 1483, 1519, 1553
EcoRII CCWGG 1 cut(s) 787
EcoT14I CCWWGG 1 cut(s) 887
ErhI CCWWGG 1 cut(s) 887
FalI AAGNNNNNCTT 4 cut(s) 880, 912, 1107, 1139
FaqI GGGAC 2 cut(s) 770, 1078
FbaI TGATCA 1 cut(s) 313
FblI GTMKAC 1 cut(s) 40
Fnu4HI GCNGC 5 cut(s) 523, 554, 1217, 1650, 1890
FokI GGATG 9 cut(s) 350, 728, 855, 1060, 1120, 1463, 1613, 1852, 1856
Fsp4HI GCNGC 5 cut(s) 523, 554, 1217, 1650, 1890
FspBI CTAG 6 cut(s) 383, 794, 860, 917, 929, 1737
GluI GCNGC 5 cut(s) 523, 554, 1217, 1650, 1890
GsaI CCCAGC 2 cut(s) 306, 936
HaeIII GGCC 2 cut(s) 170, 892
HapII CCGG 3 cut(s) 1670, 1721, 1766
HgaI GACGC 1 cut(s) 1214
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HindIII AAGCTT 1 cut(s) 1038
HpaI GTTAAC 1 cut(s) 217
HpaII CCGG 3 cut(s) 1670, 1721, 1766
HphI GGTGA 1 cut(s) 1739
Hpy166II GTNNAC 3 cut(s) 41, 217, 972
Hpy8I GTNNAC 3 cut(s) 41, 217, 972
HpyAV CCTTC 4 cut(s) 633, 783, 882, 1495
HpyCH4III ACNGT 2 cut(s) 45, 668
HpyCH4IV ACGT 2 cut(s) 1495, 1561
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 137, 1222
HpyF3I CTNAG 8 cut(s) 148, 279, 569, 957, 963, 999, 1359, 1446
HpySE526I ACGT 2 cut(s) 1495, 1561
Ksp22I TGATCA 1 cut(s) 313
KspAI GTTAAC 1 cut(s) 217
LmnI GCTCC 5 cut(s) 625, 811, 1000, 1762, 1783
Lsp1109I GCAGC 5 cut(s) 534, 565, 1228, 1661, 1876
LweI GCATC 5 cut(s) 263, 706, 929, 1444, 1834
MaeI CTAG 6 cut(s) 383, 794, 860, 917, 929, 1737
MaeII ACGT 2 cut(s) 1495, 1561
MaeIII GTNAC 6 cut(s) 45, 394, 707, 799, 1471, 1507
MfeI CAATTG 1 cut(s) 903
MflI RGATCY 4 cut(s) 282, 375, 437, 1172
MhlI GDGCHC 4 cut(s) 622, 1188, 1719, 1838
MlsI TGGCCA 1 cut(s) 170
MluNI TGGCCA 1 cut(s) 170
MlyI GAGTC 3 cut(s) 224, 650, 1742
MmeI TCCRAC 2 cut(s) 675, 1578
Mox20I TGGCCA 1 cut(s) 170
MroXI GAANNNNTTC 2 cut(s) 772, 1144
MscI TGGCCA 1 cut(s) 170
MseI TTAA 5 cut(s) 216, 297, 1007, 1194, 1437
MslI CAYNNNNRTG 4 cut(s) 170, 176, 1078, 1361
Msp20I TGGCCA 1 cut(s) 170
MspA1I CMGCKG 2 cut(s) 140, 152
MspI CCGG 3 cut(s) 1670, 1721, 1766
MspR9I CCNGG 2 cut(s) 789, 1721
MunI CAATTG 1 cut(s) 903
Mva1269I GAATGC 1 cut(s) 1279
MvaI CCWGG 1 cut(s) 789
MwoI GCNNNNNNNGC 3 cut(s) 101, 137, 1222
NciI CCSGG 1 cut(s) 1721
NlaIV GGNNCC 4 cut(s) 390, 786, 1410, 1764
NmuCI GTSAC 3 cut(s) 45, 1471, 1507
NspI RCATGY 3 cut(s) 431, 606, 757
PagI TCATGA 1 cut(s) 1228
PceI AGGCCT 1 cut(s) 892
PciI ACATGT 1 cut(s) 753
PctI GAATGC 1 cut(s) 1279
PdmI GAANNNNTTC 2 cut(s) 772, 1144
Pfl23II CGTACG 1 cut(s) 1496
PkrI GCNGC 5 cut(s) 524, 555, 1218, 1651, 1891
PleI GAGTC 3 cut(s) 224, 649, 1741
PmaCI CACGTG 1 cut(s) 1562
PmlI CACGTG 1 cut(s) 1562
PpsI GAGTC 3 cut(s) 224, 649, 1741
Ppu21I YACGTR 1 cut(s) 1562
PscI ACATGT 1 cut(s) 753
Psp6I CCWGG 1 cut(s) 787
PspCI CACGTG 1 cut(s) 1562
PspFI CCCAGC 2 cut(s) 302, 932
PspGI CCWGG 1 cut(s) 787
PspLI CGTACG 1 cut(s) 1496
PspN4I GGNNCC 4 cut(s) 390, 786, 1410, 1764
PspPI GGNCC 3 cut(s) 445, 784, 1772
PstI CTGCAG 1 cut(s) 1857
PsuI RGATCY 4 cut(s) 282, 375, 437, 1172
PvuII CAGCTG 1 cut(s) 152
RsaI GTAC 4 cut(s) 136, 567, 973, 1498
RsaNI GTAC 4 cut(s) 135, 566, 972, 1497
RseI CAYNNNNRTG 4 cut(s) 170, 176, 1078, 1361
SaqAI TTAA 5 cut(s) 216, 297, 1007, 1194, 1437
SatI GCNGC 5 cut(s) 523, 554, 1217, 1650, 1890
Sau96I GGNCC 3 cut(s) 445, 784, 1772
ScaI AGTACT 1 cut(s) 567
SchI GAGTC 3 cut(s) 224, 650, 1742
ScrFI CCNGG 2 cut(s) 789, 1721
SduI GDGCHC 4 cut(s) 622, 1188, 1719, 1838
SfaNI GCATC 5 cut(s) 263, 706, 929, 1444, 1834
SfcI CTRYAG 2 cut(s) 1813, 1853
SinI GGWCC 3 cut(s) 445, 784, 1772
SmiMI CAYNNNNRTG 4 cut(s) 170, 176, 1078, 1361
SmlI CTYRAG 3 cut(s) 50, 539, 607
SmoI CTYRAG 3 cut(s) 50, 539, 607
SseBI AGGCCT 1 cut(s) 892
SsiI CCGC 1 cut(s) 140
SspMI CTAG 6 cut(s) 383, 794, 860, 917, 929, 1737
StuI AGGCCT 1 cut(s) 892
StyD4I CCNGG 2 cut(s) 787, 1719
StyI CCWWGG 1 cut(s) 887
TaaI ACNGT 2 cut(s) 45, 668
TaiI ACGT 2 cut(s) 1498, 1564
TaqI TCGA 2 cut(s) 460, 1306
TatI WGTACW 3 cut(s) 134, 565, 971
Tru1I TTAA 5 cut(s) 216, 297, 1007, 1194, 1437
Tru9I TTAA 5 cut(s) 216, 297, 1007, 1194, 1437
TscAI CASTG 7 cut(s) 274, 673, 1243, 1363, 1599, 1636, 1862
TseFI GTSAC 3 cut(s) 45, 1471, 1507
TseI GCWGC 5 cut(s) 522, 553, 1216, 1649, 1889
Tsp45I GTSAC 3 cut(s) 45, 1471, 1507
TspDTI ATGAA 7 cut(s) 93, 928, 1026, 1104, 1122, 1137, 1199
TspGWI ACGGA 1 cut(s) 1218
TspRI CASTG 7 cut(s) 274, 673, 1243, 1363, 1599, 1636, 1862
VpaK11BI GGWCC 3 cut(s) 445, 784, 1772
XapI RAATTY 9 cut(s) 586, 812, 1140, 1206, 1483, 1519, 1553, 1587, 1607
XbaI TCTAGA 1 cut(s) 382
XceI RCATGY 3 cut(s) 431, 606, 757
XmiI GTMKAC 1 cut(s) 40
XmnI GAANNNNTTC 2 cut(s) 772, 1144
XspI CTAG 6 cut(s) 383, 794, 860, 917, 929, 1737
ZrmI AGTACT 1 cut(s) 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.