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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G47940 |
| fragaria_vesca | FvH4_5g06191 FvH4_7g01170 FvH4_7g01170 FvH4_7g01170 |
| malus_domestica | MD00G1112200.v1.1 MD02G1309200.v1.1 MD07G1012500.v1.1 |
| prunus_persica | Prupe.2G015000_v2.0.a1 |
| pyrus_communis | pycom02g26050 pycom07g01030 |
| rosa_chinensis | RchiOBHm_Chr1g0316471 |
| rosa_laevigata | RLG00000030670 |
| rosa_multiflora | Rmu_sc0006790.1_g000005 |
| rosa_roxburghii | Rroxscaffold_4G00330970 |
| rosa_rugosa | Rorug01G0011100 |
| rosa_samantha | Rh1AG020600 Rh1BG015900 Rh1CG018900 Rh1DG016000 |
| rosa_wichuraiana | Rw1G001350 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 145 |
| Acc36I | ACCTGC | 2 cut(s) | 235, 1519 |
| AccI | GTMKAC | 2 cut(s) | 622, 666 |
| AccII | CGCG | 1 cut(s) | 2178 |
| AciI | CCGC | 5 cut(s) | 57, 60, 792, 986, 2333 |
| AclWI | GGATC | 5 cut(s) | 976, 1062, 1095, 1685, 2016 |
| AcoI | YGGCCR | 1 cut(s) | 750 |
| AcsI | RAATTY | 6 cut(s) | 400, 1195, 1378, 1421, 2222, 2408 |
| AcuI | CTGAAG | 4 cut(s) | 450, 1476, 1752, 2174 |
| AfaI | GTAC | 6 cut(s) | 262, 325, 390, 718, 967, 1176 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 48, 66, 1300 |
| AflII | CTTAAG | 1 cut(s) | 416 |
| AflIII | ACRYGT | 2 cut(s) | 669, 1362 |
| AhlI | ACTAGT | 1 cut(s) | 991 |
| AjnI | CCWGG | 2 cut(s) | 2004, 2076 |
| Alw21I | GWGCWC | 4 cut(s) | 799, 1231, 1706, 1812 |
| Alw26I | GTCTC | 6 cut(s) | 92, 106, 131, 417, 1715, 2480 |
| Alw44I | GTGCAC | 1 cut(s) | 1227 |
| AlwI | GGATC | 5 cut(s) | 976, 1062, 1095, 1685, 2016 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1418, 1748, 2099 |
| Ama87I | CYCGRG | 1 cut(s) | 267 |
| AoxI | GGCC | 3 cut(s) | 750, 2334, 2389 |
| ApaLI | GTGCAC | 1 cut(s) | 1227 |
| ApeKI | GCWGC | 4 cut(s) | 887, 1162, 2180, 2495 |
| ApoI | RAATTY | 6 cut(s) | 400, 1195, 1378, 1421, 2222, 2408 |
| AseI | ATTAAT | 2 cut(s) | 216, 1716 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 363 |
| AspLEI | GCGC | 2 cut(s) | 1688, 2180 |
| AspS9I | GGNCC | 5 cut(s) | 69, 238, 421, 2335, 2390 |
| AsuC2I | CCSGG | 2 cut(s) | 1201, 2339 |
| AsuHPI | GGTGA | 7 cut(s) | 177, 386, 791, 923, 958, 1445, 2357 |
| AvaI | CYCGRG | 1 cut(s) | 267 |
| AvaII | GGWCC | 3 cut(s) | 69, 238, 421 |
| BaeGI | GKGCMC | 1 cut(s) | 1231 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 492, 525 |
| BalI | TGGCCA | 1 cut(s) | 752 |
| BanII | GRGCYC | 1 cut(s) | 2252 |
| BbsI | GAAGAC | 2 cut(s) | 108, 2469 |
| Bbv12I | GWGCWC | 4 cut(s) | 799, 1231, 1706, 1812 |
| BbvI | GCAGC | 4 cut(s) | 874, 1174, 2167, 2507 |
| BccI | CCATC | 8 cut(s) | 80, 190, 433, 1829, 1853, 1877, 2054, 2396 |
| BceAI | ACGGC | 1 cut(s) | 1278 |
| BciT130I | CCWGG | 2 cut(s) | 2006, 2078 |
| BclI | TGATCA | 1 cut(s) | 928 |
| BcnI | CCSGG | 2 cut(s) | 1201, 2339 |
| BcoDI | GTCTC | 6 cut(s) | 92, 106, 131, 417, 1715, 2480 |
| BcuI | ACTAGT | 1 cut(s) | 991 |
| BfaI | CTAG | 7 cut(s) | 851, 992, 1091, 1403, 1547, 1913, 1935 |
| BfmI | CTRYAG | 2 cut(s) | 573, 2431 |
| BfrI | CTTAAG | 1 cut(s) | 416 |
| BfuAI | ACCTGC | 2 cut(s) | 235, 1519 |
| BglII | AGATCT | 1 cut(s) | 1793 |
| BisI | GCNGC | 6 cut(s) | 60, 888, 1163, 2181, 2334, 2496 |
| BlpI | GCTNAGC | 1 cut(s) | 730 |
| BlsI | GCNGC | 6 cut(s) | 61, 889, 1164, 2182, 2335, 2497 |
| BmcAI | AGTACT | 2 cut(s) | 262, 1176 |
| Bme1390I | CCNGG | 4 cut(s) | 1201, 2006, 2078, 2339 |
| Bme18I | GGWCC | 3 cut(s) | 69, 238, 421 |
| BmeT110I | CYCGRG | 1 cut(s) | 267 |
| BmgT120I | GGNCC | 5 cut(s) | 69, 238, 421, 2335, 2390 |
| BmiI | GGNNCC | 3 cut(s) | 423, 2337, 2382 |
| BmrFI | CCNGG | 4 cut(s) | 1201, 2006, 2078, 2339 |
| BmsI | GCATC | 4 cut(s) | 580, 1327, 1547, 2320 |
| BpiI | GAAGAC | 2 cut(s) | 108, 2469 |
| BpmI | CTGGAG | 2 cut(s) | 1644, 2190 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 730 |
| BpuEI | CTTGAG | 4 cut(s) | 424, 653, 1201, 2028 |
| BpuMI | CCSGG | 2 cut(s) | 1201, 2339 |
| BsaAI | YACGTR | 1 cut(s) | 670 |
| BsaI | GGTCTC | 1 cut(s) | 417 |
| BsaJI | CCNNGG | 3 cut(s) | 2076, 2187, 2337 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2290, 2320 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 48, 66, 1300 |
| Bse118I | RCCGGY | 1 cut(s) | 77 |
| Bse1I | ACTGG | 6 cut(s) | 71, 465, 482, 882, 2207, 2384 |
| Bse3DI | GCAATG | 1 cut(s) | 316 |
| BseBI | CCWGG | 2 cut(s) | 2006, 2078 |
| BseDI | CCNNGG | 3 cut(s) | 2076, 2187, 2337 |
| BseGI | GGATG | 5 cut(s) | 1342, 1864, 2001, 2221, 2380 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 48, 66, 1300 |
| BseMI | GCAATG | 1 cut(s) | 316 |
| BseMII | CTCAG | 4 cut(s) | 744, 1572, 2246, 2271 |
| BseNI | ACTGG | 6 cut(s) | 71, 465, 482, 882, 2207, 2384 |
| BseRI | GAGGAG | 3 cut(s) | 1457, 1460, 2393 |
| BseSI | GKGCMC | 1 cut(s) | 1231 |
| BseXI | GCAGC | 4 cut(s) | 874, 1174, 2167, 2507 |
| BseYI | CCCAGC | 2 cut(s) | 734, 1575 |
| BsgI | GTGCAG | 3 cut(s) | 537, 1527, 1826 |
| Bsh1236I | CGCG | 1 cut(s) | 2178 |
| Bsh1285I | CGRYCG | 1 cut(s) | 129 |
| BshFI | GGCC | 3 cut(s) | 752, 2336, 2391 |
| BsiEI | CGRYCG | 1 cut(s) | 129 |
| BsiHKAI | GWGCWC | 4 cut(s) | 799, 1231, 1706, 1812 |
| BsiHKCI | CYCGRG | 1 cut(s) | 267 |
| BsiSI | CCGG | 3 cut(s) | 78, 1200, 2339 |
| BslFI | GGGAC | 2 cut(s) | 479, 2215 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 48, 66, 1300 |
| BsmAI | GTCTC | 6 cut(s) | 92, 106, 131, 417, 1715, 2480 |
| BsmBI | CGTCTC | 2 cut(s) | 106, 1715 |
| BsmFI | GGGAC | 2 cut(s) | 479, 2215 |
| BsmI | GAATGC | 1 cut(s) | 1906 |
| BsnI | GGCC | 3 cut(s) | 752, 2336, 2391 |
| Bso31I | GGTCTC | 1 cut(s) | 417 |
| BsoBI | CYCGRG | 1 cut(s) | 267 |
| Bsp1286I | GDGCHC | 5 cut(s) | 799, 1231, 1706, 1812, 2252 |
| Bsp1407I | TGTACA | 1 cut(s) | 323 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 730 |
| BspACI | CCGC | 5 cut(s) | 57, 60, 792, 986, 2333 |
| BspANI | GGCC | 3 cut(s) | 752, 2336, 2391 |
| BspCNI | CTCAG | 4 cut(s) | 743, 1573, 2245, 2272 |
| BspFNI | CGCG | 1 cut(s) | 2178 |
| BspHI | TCATGA | 1 cut(s) | 1465 |
| BspLI | GGNNCC | 3 cut(s) | 423, 2337, 2382 |
| BspMI | ACCTGC | 2 cut(s) | 235, 1519 |
| BspPI | GGATC | 5 cut(s) | 976, 1062, 1095, 1685, 2016 |
| BspQI | GCTCTTC | 1 cut(s) | 1721 |
| BspTI | CTTAAG | 1 cut(s) | 416 |
| BspTNI | GGTCTC | 1 cut(s) | 417 |
| BsrDI | GCAATG | 1 cut(s) | 316 |
| BsrFI | RCCGGY | 1 cut(s) | 77 |
| BsrGI | TGTACA | 1 cut(s) | 323 |
| BsrI | ACTGG | 6 cut(s) | 71, 465, 482, 882, 2207, 2384 |
| BssAI | RCCGGY | 1 cut(s) | 77 |
| BssECI | CCNNGG | 3 cut(s) | 2076, 2187, 2337 |
| Bst2UI | CCWGG | 2 cut(s) | 2006, 2078 |
| Bst4CI | ACNGT | 5 cut(s) | 328, 627, 721, 871, 961 |
| Bst6I | CTCTTC | 4 cut(s) | 49, 1721, 1956, 2124 |
| BstAFI | CTTAAG | 1 cut(s) | 416 |
| BstAUI | TGTACA | 1 cut(s) | 323 |
| BstBAI | YACGTR | 1 cut(s) | 670 |
| BstC8I | GCNNGC | 1 cut(s) | 919 |
| BstDEI | CTNAG | 5 cut(s) | 730, 894, 1581, 2232, 2280 |
| BstDSI | CCRYGG | 1 cut(s) | 2187 |
| BstF5I | GGATG | 5 cut(s) | 1342, 1864, 2001, 2221, 2380 |
| BstFNI | CGCG | 1 cut(s) | 2178 |
| BstHHI | GCGC | 2 cut(s) | 1688, 2180 |
| BstMAI | GTCTC | 6 cut(s) | 92, 106, 131, 417, 1715, 2480 |
| BstMCI | CGRYCG | 1 cut(s) | 129 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 36, 1754, 2276 |
| BstNI | CCWGG | 2 cut(s) | 2006, 2078 |
| BstNSI | RCATGY | 4 cut(s) | 1215, 1366, 2458, 2475 |
| BstSCI | CCNGG | 4 cut(s) | 1199, 2004, 2076, 2337 |
| BstSFI | CTRYAG | 2 cut(s) | 573, 2431 |
| BstSLI | GKGCMC | 1 cut(s) | 1231 |
| BstUI | CGCG | 1 cut(s) | 2178 |
| BstV1I | GCAGC | 4 cut(s) | 874, 1174, 2167, 2507 |
| BstV2I | GAAGAC | 2 cut(s) | 108, 2469 |
| BstX2I | RGATCY | 5 cut(s) | 981, 1087, 1690, 1793, 2008 |
| BstYI | RGATCY | 5 cut(s) | 981, 1087, 1690, 1793, 2008 |
| BsuRI | GGCC | 3 cut(s) | 752, 2336, 2391 |
| BtgI | CCRYGG | 1 cut(s) | 2187 |
| BtgZI | GCGATG | 1 cut(s) | 58 |
| BtsCI | GGATG | 5 cut(s) | 1342, 1864, 2001, 2221, 2380 |
| BtsIMutI | CAGTG | 4 cut(s) | 472, 726, 889, 1812 |
| BveI | ACCTGC | 2 cut(s) | 235, 1519 |
| Cac8I | GCNNGC | 1 cut(s) | 919 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1418, 1748, 2099 |
| CciI | TCATGA | 1 cut(s) | 1465 |
| CfoI | GCGC | 2 cut(s) | 1688, 2180 |
| Cfr10I | RCCGGY | 1 cut(s) | 77 |
| Cfr13I | GGNCC | 5 cut(s) | 69, 238, 421, 2335, 2390 |
| CseI | GACGC | 2 cut(s) | 88, 1538 |
| Csp6I | GTAC | 6 cut(s) | 261, 324, 389, 717, 966, 1175 |
| CviQI | GTAC | 6 cut(s) | 261, 324, 389, 717, 966, 1175 |
| DdeI | CTNAG | 5 cut(s) | 730, 894, 1581, 2232, 2280 |
| DraI | TTTAAA | 1 cut(s) | 1626 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 145 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 145 |
| EaeI | YGGCCR | 1 cut(s) | 750 |
| Eam1104I | CTCTTC | 4 cut(s) | 49, 1721, 1956, 2124 |
| EarI | CTCTTC | 4 cut(s) | 49, 1721, 1956, 2124 |
| EciI | GGCGGA | 1 cut(s) | 46 |
| Eco24I | GRGCYC | 1 cut(s) | 2252 |
| Eco31I | GGTCTC | 1 cut(s) | 417 |
| Eco47I | GGWCC | 3 cut(s) | 69, 238, 421 |
| Eco57I | CTGAAG | 4 cut(s) | 450, 1476, 1752, 2174 |
| Eco88I | CYCGRG | 1 cut(s) | 267 |
| EcoO109I | RGGNCCY | 1 cut(s) | 421 |
| EcoRI | GAATTC | 1 cut(s) | 1195 |
| EcoRII | CCWGG | 2 cut(s) | 2004, 2076 |
| EcoT22I | ATGCAT | 1 cut(s) | 1247 |
| EcoT38I | GRGCYC | 1 cut(s) | 2252 |
| Esp3I | CGTCTC | 2 cut(s) | 106, 1715 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 348, 380, 1498, 1530, 1860, 1892 |
| FaqI | GGGAC | 2 cut(s) | 479, 2215 |
| FauI | CCCGC | 1 cut(s) | 993 |
| FbaI | TGATCA | 1 cut(s) | 928 |
| FblI | GTMKAC | 2 cut(s) | 622, 666 |
| Fnu4HI | GCNGC | 6 cut(s) | 60, 888, 1163, 2181, 2334, 2496 |
| FokI | GGATG | 5 cut(s) | 1349, 1871, 1988, 2228, 2387 |
| FriOI | GRGCYC | 1 cut(s) | 2252 |
| Fsp4HI | GCNGC | 6 cut(s) | 60, 888, 1163, 2181, 2334, 2496 |
| FspBI | CTAG | 7 cut(s) | 851, 992, 1091, 1403, 1547, 1913, 1935 |
| GlaI | GCGC | 2 cut(s) | 1687, 2179 |
| GluI | GCNGC | 6 cut(s) | 60, 888, 1163, 2181, 2334, 2496 |
| GsaI | CCCAGC | 2 cut(s) | 738, 1579 |
| GsuI | CTGGAG | 2 cut(s) | 1644, 2190 |
| HaeIII | GGCC | 3 cut(s) | 752, 2336, 2391 |
| HapII | CCGG | 3 cut(s) | 78, 1200, 2339 |
| HgaI | GACGC | 2 cut(s) | 88, 1538 |
| HhaI | GCGC | 2 cut(s) | 1688, 2180 |
| Hin6I | GCGC | 2 cut(s) | 1686, 2178 |
| HinP1I | GCGC | 2 cut(s) | 1686, 2178 |
| HincII | GTYRAC | 1 cut(s) | 1648 |
| HindII | GTYRAC | 1 cut(s) | 1648 |
| HpaII | CCGG | 3 cut(s) | 78, 1200, 2339 |
| HphI | GGTGA | 7 cut(s) | 177, 386, 791, 923, 958, 1445, 2357 |
| Hpy166II | GTNNAC | 5 cut(s) | 150, 623, 667, 1229, 1648 |
| Hpy8I | GTNNAC | 5 cut(s) | 150, 623, 667, 1229, 1648 |
| Hpy99I | CGWCG | 2 cut(s) | 134, 137 |
| HpyAV | CCTTC | 6 cut(s) | 902, 1242, 1500, 1704, 1862, 2319 |
| HpyCH4III | ACNGT | 5 cut(s) | 328, 627, 721, 871, 961 |
| HpyCH4IV | ACGT | 3 cut(s) | 391, 669, 1326 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 36, 1754, 2276 |
| HpyF3I | CTNAG | 5 cut(s) | 730, 894, 1581, 2232, 2280 |
| HpySE526I | ACGT | 3 cut(s) | 391, 669, 1326 |
| HspAI | GCGC | 2 cut(s) | 1686, 2178 |
| Ksp22I | TGATCA | 1 cut(s) | 928 |
| LguI | GCTCTTC | 1 cut(s) | 1721 |
| LmnI | GCTCC | 5 cut(s) | 180, 1420, 1618, 2311, 2380 |
| Lsp1109I | GCAGC | 4 cut(s) | 874, 1174, 2167, 2507 |
| LweI | GCATC | 4 cut(s) | 580, 1327, 1547, 2320 |
| MaeI | CTAG | 7 cut(s) | 851, 992, 1091, 1403, 1547, 1913, 1935 |
| MaeII | ACGT | 3 cut(s) | 391, 669, 1326 |
| MaeIII | GTNAC | 4 cut(s) | 861, 1408, 1483, 2069 |
| MfeI | CAATTG | 2 cut(s) | 1331, 1521 |
| MflI | RGATCY | 5 cut(s) | 981, 1087, 1690, 1793, 2008 |
| MhlI | GDGCHC | 5 cut(s) | 799, 1231, 1706, 1812, 2252 |
| MlsI | TGGCCA | 1 cut(s) | 752 |
| MluNI | TGGCCA | 1 cut(s) | 752 |
| MlyI | GAGTC | 6 cut(s) | 119, 133, 279, 1259, 2105, 2197 |
| MmeI | TCCRAC | 1 cut(s) | 1284 |
| Mox20I | TGGCCA | 1 cut(s) | 752 |
| Mph1103I | ATGCAT | 1 cut(s) | 1247 |
| MroXI | GAANNNNTTC | 1 cut(s) | 363 |
| MscI | TGGCCA | 1 cut(s) | 752 |
| MseI | TTAA | 7 cut(s) | 216, 417, 539, 1608, 1625, 1716, 2105 |
| MslI | CAYNNNNRTG | 3 cut(s) | 372, 752, 758 |
| Msp20I | TGGCCA | 1 cut(s) | 752 |
| MspA1I | CMGCKG | 2 cut(s) | 695, 734 |
| MspCI | CTTAAG | 1 cut(s) | 416 |
| MspI | CCGG | 3 cut(s) | 78, 1200, 2339 |
| MspR9I | CCNGG | 4 cut(s) | 1201, 2006, 2078, 2339 |
| MunI | CAATTG | 2 cut(s) | 1331, 1521 |
| Mva1269I | GAATGC | 1 cut(s) | 1906 |
| MvaI | CCWGG | 2 cut(s) | 2006, 2078 |
| MvnI | CGCG | 1 cut(s) | 2178 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 36, 1754, 2276 |
| NciI | CCSGG | 2 cut(s) | 1201, 2339 |
| NlaIV | GGNNCC | 3 cut(s) | 423, 2337, 2382 |
| NmuCI | GTSAC | 1 cut(s) | 861 |
| NsiI | ATGCAT | 1 cut(s) | 1247 |
| NspI | RCATGY | 4 cut(s) | 1215, 1366, 2458, 2475 |
| PagI | TCATGA | 1 cut(s) | 1465 |
| PciI | ACATGT | 1 cut(s) | 1362 |
| PciSI | GCTCTTC | 1 cut(s) | 1721 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 96 |
| PctI | GAATGC | 1 cut(s) | 1906 |
| PdmI | GAANNNNTTC | 1 cut(s) | 363 |
| PfoI | TCCNGGA | 1 cut(s) | 2004 |
| PkrI | GCNGC | 6 cut(s) | 61, 889, 1164, 2182, 2335, 2497 |
| Ple19I | CGATCG | 1 cut(s) | 129 |
| PleI | GAGTC | 6 cut(s) | 118, 133, 278, 1258, 2104, 2197 |
| PpsI | GAGTC | 6 cut(s) | 118, 133, 278, 1258, 2104, 2197 |
| Ppu21I | YACGTR | 1 cut(s) | 670 |
| PpuMI | RGGWCCY | 1 cut(s) | 421 |
| PscI | ACATGT | 1 cut(s) | 1362 |
| PshBI | ATTAAT | 2 cut(s) | 216, 1716 |
| Psp5II | RGGWCCY | 1 cut(s) | 421 |
| Psp6I | CCWGG | 2 cut(s) | 2004, 2076 |
| PspFI | CCCAGC | 2 cut(s) | 734, 1575 |
| PspGI | CCWGG | 2 cut(s) | 2004, 2076 |
| PspN4I | GGNNCC | 3 cut(s) | 423, 2337, 2382 |
| PspPI | GGNCC | 5 cut(s) | 69, 238, 421, 2335, 2390 |
| PspPPI | RGGWCCY | 1 cut(s) | 421 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1418, 1748, 2099 |
| PsuI | RGATCY | 5 cut(s) | 981, 1087, 1690, 1793, 2008 |
| PvuI | CGATCG | 1 cut(s) | 129 |
| PvuII | CAGCTG | 2 cut(s) | 695, 734 |
| RsaI | GTAC | 6 cut(s) | 262, 325, 390, 718, 967, 1176 |
| RsaNI | GTAC | 6 cut(s) | 261, 324, 389, 717, 966, 1175 |
| RseI | CAYNNNNRTG | 3 cut(s) | 372, 752, 758 |
| SapI | GCTCTTC | 1 cut(s) | 1721 |
| SaqAI | TTAA | 7 cut(s) | 216, 417, 539, 1608, 1625, 1716, 2105 |
| SatI | GCNGC | 6 cut(s) | 60, 888, 1163, 2181, 2334, 2496 |
| Sau96I | GGNCC | 5 cut(s) | 69, 238, 421, 2335, 2390 |
| ScaI | AGTACT | 2 cut(s) | 262, 1176 |
| SchI | GAGTC | 6 cut(s) | 119, 133, 279, 1259, 2105, 2197 |
| ScrFI | CCNGG | 4 cut(s) | 1201, 2006, 2078, 2339 |
| SduI | GDGCHC | 5 cut(s) | 799, 1231, 1706, 1812, 2252 |
| SfaNI | GCATC | 4 cut(s) | 580, 1327, 1547, 2320 |
| SfcI | CTRYAG | 2 cut(s) | 573, 2431 |
| SgrAI | CRCCGGYG | 1 cut(s) | 77 |
| SinI | GGWCC | 3 cut(s) | 69, 238, 421 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 372, 752, 758 |
| SmlI | CTYRAG | 5 cut(s) | 416, 439, 632, 1216, 2043 |
| SmoI | CTYRAG | 5 cut(s) | 416, 439, 632, 1216, 2043 |
| SpeI | ACTAGT | 1 cut(s) | 991 |
| SsiI | CCGC | 5 cut(s) | 57, 60, 792, 986, 2333 |
| SspMI | CTAG | 7 cut(s) | 851, 992, 1091, 1403, 1547, 1913, 1935 |
| StyD4I | CCNGG | 4 cut(s) | 1199, 2004, 2076, 2337 |
| TaaI | ACNGT | 5 cut(s) | 328, 627, 721, 871, 961 |
| TaiI | ACGT | 3 cut(s) | 394, 672, 1329 |
| TaqI | TCGA | 4 cut(s) | 24, 108, 129, 1069 |
| TaqII | GACCGA | 1 cut(s) | 2315 |
| TatI | WGTACW | 4 cut(s) | 260, 323, 716, 1174 |
| TauI | GCSGC | 2 cut(s) | 62, 2336 |
| Tru1I | TTAA | 7 cut(s) | 216, 417, 539, 1608, 1625, 1716, 2105 |
| Tru9I | TTAA | 7 cut(s) | 216, 417, 539, 1608, 1625, 1716, 2105 |
| TscAI | CASTG | 4 cut(s) | 472, 726, 889, 1819 |
| TseFI | GTSAC | 1 cut(s) | 861 |
| TseI | GCWGC | 4 cut(s) | 887, 1162, 2180, 2495 |
| Tsp45I | GTSAC | 1 cut(s) | 861 |
| TspDTI | ATGAA | 7 cut(s) | 36, 356, 369, 396, 582, 1482, 1546 |
| TspGWI | ACGGA | 3 cut(s) | 2003, 2176, 2302 |
| TspRI | CASTG | 4 cut(s) | 472, 726, 889, 1819 |
| Vha464I | CTTAAG | 1 cut(s) | 416 |
| VneI | GTGCAC | 1 cut(s) | 1227 |
| VpaK11BI | GGWCC | 3 cut(s) | 69, 238, 421 |
| VspI | ATTAAT | 2 cut(s) | 216, 1716 |
| XapI | RAATTY | 6 cut(s) | 400, 1195, 1378, 1421, 2222, 2408 |
| XbaI | TCTAGA | 1 cut(s) | 1934 |
| XceI | RCATGY | 4 cut(s) | 1215, 1366, 2458, 2475 |
| XmiI | GTMKAC | 2 cut(s) | 622, 666 |
| XmnI | GAANNNNTTC | 1 cut(s) | 363 |
| XspI | CTAG | 7 cut(s) | 851, 992, 1091, 1403, 1547, 1913, 1935 |
| ZrmI | AGTACT | 2 cut(s) | 262, 1176 |
| Zsp2I | ATGCAT | 1 cut(s) | 1247 |