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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G47940 |
| fragaria_vesca | FvH4_5g06191 FvH4_7g01170 FvH4_7g01170 FvH4_7g01170 |
| malus_domestica | MD00G1112200.v1.1 MD02G1309200.v1.1 MD07G1012500.v1.1 |
| prunus_persica | Prupe.2G015000_v2.0.a1 |
| pyrus_communis | pycom02g26050 pycom07g01030 |
| rosa_chinensis | RchiOBHm_Chr1g0316471 |
| rosa_laevigata | RLG00000030670 |
| rosa_multiflora | Rmu_sc0006790.1_g000005 |
| rosa_roxburghii | Rroxscaffold_4G00330970 |
| rosa_rugosa | Rorug01G0011100 |
| rosa_samantha | Rh1AG020600 Rh1BG015900 Rh1CG018900 Rh1DG016000 |
| rosa_wichuraiana | Rw1G001350 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1017 |
| AccB1I | GGYRCC | 1 cut(s) | 1969 |
| AccBSI | CCGCTC | 1 cut(s) | 1827 |
| AccI | GTMKAC | 1 cut(s) | 601 |
| AccII | CGCG | 1 cut(s) | 78 |
| AciI | CCGC | 6 cut(s) | 21, 132, 315, 488, 701, 1827 |
| AclWI | GGATC | 6 cut(s) | 132, 145, 653, 838, 931, 1413 |
| AcoI | YGGCCR | 1 cut(s) | 729 |
| AcuI | CTGAAG | 3 cut(s) | 429, 1587, 2265 |
| AcvI | CACGTG | 1 cut(s) | 2123 |
| AdeI | CACNNNGTG | 1 cut(s) | 2255 |
| AfaI | GTAC | 5 cut(s) | 241, 304, 697, 1128, 1534 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 27, 110, 173, 946, 2285 |
| AflIII | ACRYGT | 1 cut(s) | 1314 |
| AjiI | CACGTC | 1 cut(s) | 2057 |
| AjnI | CCWGG | 1 cut(s) | 1348 |
| Alw21I | GWGCWC | 5 cut(s) | 35, 443, 1183, 1749, 2399 |
| Alw26I | GTCTC | 5 cut(s) | 396, 1509, 1976, 2435, 2462 |
| AlwI | GGATC | 6 cut(s) | 132, 145, 653, 838, 931, 1413 |
| AoxI | GGCC | 2 cut(s) | 729, 1451 |
| ApeKI | GCWGC | 7 cut(s) | 312, 323, 1083, 1114, 1777, 2210, 2450 |
| AseI | ATTAAT | 1 cut(s) | 195 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 342, 366, 1333, 1705 |
| AspS9I | GGNCC | 6 cut(s) | 48, 176, 217, 1006, 1345, 2333 |
| AsuC2I | CCSGG | 1 cut(s) | 2282 |
| AsuHPI | GGTGA | 5 cut(s) | 73, 146, 181, 1841, 2300 |
| AvaII | GGWCC | 6 cut(s) | 48, 176, 217, 1006, 1345, 2333 |
| AxyI | CCTNAGG | 1 cut(s) | 396 |
| BaeGI | GKGCMC | 1 cut(s) | 2280 |
| BalI | TGGCCA | 1 cut(s) | 731 |
| BamHI | GGATCC | 1 cut(s) | 137 |
| BanI | GGYRCC | 1 cut(s) | 1969 |
| BanII | GRGCYC | 1 cut(s) | 35 |
| BauI | CACGAG | 1 cut(s) | 1781 |
| BbrPI | CACGTG | 1 cut(s) | 2123 |
| BbsI | GAAGAC | 2 cut(s) | 1065, 1812 |
| Bbv12I | GWGCWC | 5 cut(s) | 35, 443, 1183, 1749, 2399 |
| BbvI | GCAGC | 7 cut(s) | 299, 310, 1095, 1126, 1789, 2222, 2437 |
| BccI | CCATC | 7 cut(s) | 473, 1574, 1642, 1652, 1811, 1985, 2339 |
| BceAI | ACGGC | 1 cut(s) | 127 |
| BciT130I | CCWGG | 1 cut(s) | 1350 |
| BciVI | GTATCC | 2 cut(s) | 904, 1656 |
| BcnI | CCSGG | 1 cut(s) | 2282 |
| BcoDI | GTCTC | 5 cut(s) | 396, 1509, 1976, 2435, 2462 |
| BfaI | CTAG | 7 cut(s) | 944, 1355, 1421, 1478, 1490, 1760, 2298 |
| BfmI | CTRYAG | 3 cut(s) | 552, 2374, 2414 |
| BfuAI | ACCTGC | 1 cut(s) | 1017 |
| BfuI | GTATCC | 2 cut(s) | 904, 1656 |
| BglII | AGATCT | 2 cut(s) | 998, 1733 |
| BisI | GCNGC | 7 cut(s) | 313, 324, 1084, 1115, 1778, 2211, 2451 |
| BlpI | GCTNAGC | 1 cut(s) | 709 |
| BlsI | GCNGC | 7 cut(s) | 314, 325, 1085, 1116, 1779, 2212, 2452 |
| BmcAI | AGTACT | 2 cut(s) | 241, 1128 |
| Bme1390I | CCNGG | 2 cut(s) | 1350, 2282 |
| Bme18I | GGWCC | 6 cut(s) | 48, 176, 217, 1006, 1345, 2333 |
| BmgBI | CACGTC | 1 cut(s) | 2057 |
| BmgT120I | GGNCC | 6 cut(s) | 48, 176, 217, 1006, 1345, 2333 |
| BmiI | GGNNCC | 6 cut(s) | 139, 540, 951, 1347, 1971, 2325 |
| BmrFI | CCNGG | 2 cut(s) | 1350, 2282 |
| BmrI | ACTGGG | 2 cut(s) | 466, 1239 |
| BmsI | GCATC | 5 cut(s) | 824, 1267, 1490, 2005, 2395 |
| BmuI | ACTGGG | 2 cut(s) | 466, 1239 |
| BpiI | GAAGAC | 2 cut(s) | 1065, 1812 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 709 |
| BpuEI | CTTGAG | 4 cut(s) | 457, 632, 1121, 1153 |
| BpuMI | CCSGG | 1 cut(s) | 2282 |
| BsaAI | YACGTR | 1 cut(s) | 2123 |
| BsaBI | GATNNNNATC | 2 cut(s) | 573, 2409 |
| BsaI | GGTCTC | 1 cut(s) | 396 |
| BsaJI | CCNNGG | 3 cut(s) | 1348, 1448, 2280 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 27, 110, 173, 946, 2285 |
| Bse118I | RCCGGY | 1 cut(s) | 2326 |
| Bse1I | ACTGG | 5 cut(s) | 444, 461, 828, 1245, 2153 |
| Bse21I | CCTNAGG | 1 cut(s) | 396 |
| Bse3DI | GCAATG | 1 cut(s) | 1932 |
| Bse8I | GATNNNNATC | 2 cut(s) | 573, 2409 |
| BseBI | CCWGG | 1 cut(s) | 1350 |
| BseDI | CCNNGG | 3 cut(s) | 1348, 1448, 2280 |
| BseGI | GGATG | 7 cut(s) | 904, 1282, 1429, 1634, 2017, 2167, 2410 |
| BseJI | GATNNNNATC | 2 cut(s) | 573, 2409 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 27, 110, 173, 946, 2285 |
| BseMI | GCAATG | 1 cut(s) | 1932 |
| BseMII | CTCAG | 7 cut(s) | 723, 1144, 1532, 1538, 1551, 1911, 2021 |
| BseNI | ACTGG | 5 cut(s) | 444, 461, 828, 1245, 2153 |
| BseRI | GAGGAG | 4 cut(s) | 1406, 1409, 1733, 2306 |
| BseSI | GKGCMC | 1 cut(s) | 2280 |
| BseXI | GCAGC | 7 cut(s) | 299, 310, 1095, 1126, 1789, 2222, 2437 |
| BseYI | CCCAGC | 2 cut(s) | 863, 1493 |
| BsgI | GTGCAG | 2 cut(s) | 1470, 1796 |
| Bsh1236I | CGCG | 1 cut(s) | 78 |
| Bsh1285I | CGRYCG | 1 cut(s) | 108 |
| BshFI | GGCC | 2 cut(s) | 731, 1453 |
| BshNI | GGYRCC | 1 cut(s) | 1969 |
| BsiEI | CGRYCG | 1 cut(s) | 108 |
| BsiHKAI | GWGCWC | 5 cut(s) | 35, 443, 1183, 1749, 2399 |
| BsiSI | CCGG | 5 cut(s) | 135, 167, 2231, 2282, 2327 |
| BslFI | GGGAC | 4 cut(s) | 85, 458, 1331, 1639 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 27, 110, 173, 946, 2285 |
| BsmAI | GTCTC | 5 cut(s) | 396, 1509, 1976, 2435, 2462 |
| BsmFI | GGGAC | 4 cut(s) | 85, 458, 1331, 1639 |
| BsmI | GAATGC | 1 cut(s) | 1840 |
| BsnI | GGCC | 2 cut(s) | 731, 1453 |
| Bso31I | GGTCTC | 1 cut(s) | 396 |
| Bsp1286I | GDGCHC | 6 cut(s) | 35, 443, 1183, 1749, 2280, 2399 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 709 |
| BspACI | CCGC | 6 cut(s) | 21, 132, 315, 488, 701, 1827 |
| BspANI | GGCC | 2 cut(s) | 731, 1453 |
| BspCNI | CTCAG | 7 cut(s) | 722, 1143, 1531, 1537, 1552, 1912, 2020 |
| BspFNI | CGCG | 1 cut(s) | 78 |
| BspHI | TCATGA | 1 cut(s) | 1789 |
| BspLI | GGNNCC | 6 cut(s) | 139, 540, 951, 1347, 1971, 2325 |
| BspMAI | CTGCAG | 1 cut(s) | 2418 |
| BspMI | ACCTGC | 1 cut(s) | 1017 |
| BspPI | GGATC | 6 cut(s) | 132, 145, 653, 838, 931, 1413 |
| BspT107I | GGYRCC | 1 cut(s) | 1969 |
| BspTNI | GGTCTC | 1 cut(s) | 396 |
| BsrBI | CCGCTC | 1 cut(s) | 1827 |
| BsrDI | GCAATG | 1 cut(s) | 1932 |
| BsrFI | RCCGGY | 1 cut(s) | 2326 |
| BsrI | ACTGG | 5 cut(s) | 444, 461, 828, 1245, 2153 |
| BssAI | RCCGGY | 1 cut(s) | 2326 |
| BssECI | CCNNGG | 3 cut(s) | 1348, 1448, 2280 |
| BssSI | CACGAG | 1 cut(s) | 1781 |
| BssT1I | CCWWGG | 1 cut(s) | 1448 |
| Bst2BI | CACGAG | 1 cut(s) | 1781 |
| Bst2UI | CCWGG | 1 cut(s) | 1350 |
| Bst4CI | ACNGT | 3 cut(s) | 307, 606, 1229 |
| Bst6I | CTCTTC | 5 cut(s) | 357, 1395, 1887, 2034, 2070 |
| BstBAI | YACGTR | 1 cut(s) | 2123 |
| BstC8I | GCNNGC | 1 cut(s) | 1455 |
| BstF5I | GGATG | 7 cut(s) | 904, 1282, 1429, 1634, 2017, 2167, 2410 |
| BstFNI | CGCG | 1 cut(s) | 78 |
| BstMAI | GTCTC | 5 cut(s) | 396, 1509, 1976, 2435, 2462 |
| BstMCI | CGRYCG | 1 cut(s) | 108 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 662, 698 |
| BstNI | CCWGG | 1 cut(s) | 1350 |
| BstNSI | RCATGY | 3 cut(s) | 992, 1167, 1318 |
| BstSCI | CCNGG | 2 cut(s) | 1348, 2280 |
| BstSFI | CTRYAG | 3 cut(s) | 552, 2374, 2414 |
| BstSLI | GKGCMC | 1 cut(s) | 2280 |
| BstUI | CGCG | 1 cut(s) | 78 |
| BstV1I | GCAGC | 7 cut(s) | 299, 310, 1095, 1126, 1789, 2222, 2437 |
| BstV2I | GAAGAC | 2 cut(s) | 1065, 1812 |
| BstX2I | RGATCY | 5 cut(s) | 137, 843, 936, 998, 1733 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 803 |
| BstYI | RGATCY | 5 cut(s) | 137, 843, 936, 998, 1733 |
| Bsu36I | CCTNAGG | 1 cut(s) | 396 |
| BsuI | GTATCC | 2 cut(s) | 904, 1656 |
| BsuRI | GGCC | 2 cut(s) | 731, 1453 |
| BtrI | CACGTC | 1 cut(s) | 2057 |
| BtsCI | GGATG | 7 cut(s) | 904, 1282, 1429, 1634, 2017, 2167, 2410 |
| BtsI | GCAGTG | 3 cut(s) | 1804, 2197, 2423 |
| BtsIMutI | CAGTG | 8 cut(s) | 451, 835, 1234, 1804, 1917, 2160, 2197, 2423 |
| BveI | ACCTGC | 1 cut(s) | 1017 |
| Cac8I | GCNNGC | 1 cut(s) | 1455 |
| CciI | TCATGA | 1 cut(s) | 1789 |
| Cfr10I | RCCGGY | 1 cut(s) | 2326 |
| Cfr13I | GGNCC | 6 cut(s) | 48, 176, 217, 1006, 1345, 2333 |
| CseI | GACGC | 2 cut(s) | 67, 125 |
| Csp6I | GTAC | 5 cut(s) | 240, 303, 696, 1127, 1533 |
| CviQI | GTAC | 5 cut(s) | 240, 303, 696, 1127, 1533 |
| DraIII | CACNNNGTG | 1 cut(s) | 2255 |
| EaeI | YGGCCR | 1 cut(s) | 729 |
| Eam1104I | CTCTTC | 5 cut(s) | 357, 1395, 1887, 2034, 2070 |
| EarI | CTCTTC | 5 cut(s) | 357, 1395, 1887, 2034, 2070 |
| Ecl136II | GAGCTC | 1 cut(s) | 33 |
| Eco130I | CCWWGG | 1 cut(s) | 1448 |
| Eco147I | AGGCCT | 1 cut(s) | 1453 |
| Eco24I | GRGCYC | 1 cut(s) | 35 |
| Eco31I | GGTCTC | 1 cut(s) | 396 |
| Eco47I | GGWCC | 6 cut(s) | 48, 176, 217, 1006, 1345, 2333 |
| Eco53kI | GAGCTC | 1 cut(s) | 33 |
| Eco57I | CTGAAG | 3 cut(s) | 429, 1587, 2265 |
| Eco72I | CACGTG | 1 cut(s) | 2123 |
| Eco81I | CCTNAGG | 1 cut(s) | 396 |
| EcoICRI | GAGCTC | 1 cut(s) | 33 |
| EcoRI | GAATTC | 5 cut(s) | 1147, 1767, 2044, 2080, 2114 |
| EcoRII | CCWGG | 1 cut(s) | 1348 |
| EcoT14I | CCWWGG | 1 cut(s) | 1448 |
| EcoT38I | GRGCYC | 1 cut(s) | 35 |
| ErhI | CCWWGG | 1 cut(s) | 1448 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 327, 359, 1441, 1473, 1668, 1700 |
| FaqI | GGGAC | 4 cut(s) | 85, 458, 1331, 1639 |
| FauI | CCCGC | 1 cut(s) | 139 |
| FauNDI | CATATG | 1 cut(s) | 544 |
| FblI | GTMKAC | 1 cut(s) | 601 |
| Fnu4HI | GCNGC | 7 cut(s) | 313, 324, 1084, 1115, 1778, 2211, 2451 |
| FokI | GGATG | 7 cut(s) | 911, 1289, 1416, 1621, 2024, 2174, 2417 |
| FriOI | GRGCYC | 1 cut(s) | 35 |
| Fsp4HI | GCNGC | 7 cut(s) | 313, 324, 1084, 1115, 1778, 2211, 2451 |
| FspBI | CTAG | 7 cut(s) | 944, 1355, 1421, 1478, 1490, 1760, 2298 |
| GluI | GCNGC | 7 cut(s) | 313, 324, 1084, 1115, 1778, 2211, 2451 |
| GsaI | CCCAGC | 2 cut(s) | 867, 1497 |
| HaeIII | GGCC | 2 cut(s) | 731, 1453 |
| HapII | CCGG | 5 cut(s) | 135, 167, 2231, 2282, 2327 |
| HgaI | GACGC | 2 cut(s) | 67, 125 |
| HincII | GTYRAC | 1 cut(s) | 778 |
| HindII | GTYRAC | 1 cut(s) | 778 |
| HindIII | AAGCTT | 1 cut(s) | 1599 |
| HpaII | CCGG | 5 cut(s) | 135, 167, 2231, 2282, 2327 |
| HphI | GGTGA | 5 cut(s) | 73, 146, 181, 1841, 2300 |
| Hpy166II | GTNNAC | 3 cut(s) | 602, 778, 1533 |
| Hpy8I | GTNNAC | 3 cut(s) | 602, 778, 1533 |
| Hpy99I | CGWCG | 4 cut(s) | 56, 113, 119, 166 |
| HpyAV | CCTTC | 5 cut(s) | 94, 1194, 1344, 1443, 2056 |
| HpyCH4III | ACNGT | 3 cut(s) | 307, 606, 1229 |
| HpyCH4IV | ACGT | 2 cut(s) | 2056, 2122 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 662, 698 |
| HpySE526I | ACGT | 2 cut(s) | 2056, 2122 |
| LmnI | GCTCC | 7 cut(s) | 30, 512, 544, 1186, 1372, 1561, 2323 |
| Lsp1109I | GCAGC | 7 cut(s) | 299, 310, 1095, 1126, 1789, 2222, 2437 |
| LweI | GCATC | 5 cut(s) | 824, 1267, 1490, 2005, 2395 |
| MaeI | CTAG | 7 cut(s) | 944, 1355, 1421, 1478, 1490, 1760, 2298 |
| MaeII | ACGT | 2 cut(s) | 2056, 2122 |
| MaeIII | GTNAC | 7 cut(s) | 79, 606, 955, 1268, 1360, 2032, 2068 |
| MbiI | CCGCTC | 1 cut(s) | 1827 |
| MfeI | CAATTG | 1 cut(s) | 1464 |
| MflI | RGATCY | 5 cut(s) | 137, 843, 936, 998, 1733 |
| MhlI | GDGCHC | 6 cut(s) | 35, 443, 1183, 1749, 2280, 2399 |
| MlsI | TGGCCA | 1 cut(s) | 731 |
| MluNI | TGGCCA | 1 cut(s) | 731 |
| MlyI | GAGTC | 4 cut(s) | 98, 785, 1211, 2303 |
| MmeI | TCCRAC | 2 cut(s) | 1236, 2139 |
| Mox20I | TGGCCA | 1 cut(s) | 731 |
| MroXI | GAANNNNTTC | 4 cut(s) | 342, 366, 1333, 1705 |
| MscI | TGGCCA | 1 cut(s) | 731 |
| MseI | TTAA | 5 cut(s) | 195, 858, 1568, 1755, 1998 |
| MslI | CAYNNNNRTG | 4 cut(s) | 731, 737, 1639, 1922 |
| Msp20I | TGGCCA | 1 cut(s) | 731 |
| MspA1I | CMGCKG | 3 cut(s) | 353, 701, 713 |
| MspI | CCGG | 5 cut(s) | 135, 167, 2231, 2282, 2327 |
| MspR9I | CCNGG | 2 cut(s) | 1350, 2282 |
| MunI | CAATTG | 1 cut(s) | 1464 |
| Mva1269I | GAATGC | 1 cut(s) | 1840 |
| MvaI | CCWGG | 1 cut(s) | 1350 |
| MvnI | CGCG | 1 cut(s) | 78 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 662, 698 |
| NciI | CCSGG | 1 cut(s) | 2282 |
| NdeI | CATATG | 1 cut(s) | 544 |
| NlaIV | GGNNCC | 6 cut(s) | 139, 540, 951, 1347, 1971, 2325 |
| NmuCI | GTSAC | 4 cut(s) | 79, 606, 2032, 2068 |
| NspI | RCATGY | 3 cut(s) | 992, 1167, 1318 |
| PagI | TCATGA | 1 cut(s) | 1789 |
| PceI | AGGCCT | 1 cut(s) | 1453 |
| PciI | ACATGT | 1 cut(s) | 1314 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 75 |
| PctI | GAATGC | 1 cut(s) | 1840 |
| PdmI | GAANNNNTTC | 4 cut(s) | 342, 366, 1333, 1705 |
| PkrI | GCNGC | 7 cut(s) | 314, 325, 1085, 1116, 1779, 2212, 2452 |
| Ple19I | CGATCG | 1 cut(s) | 108 |
| PleI | GAGTC | 4 cut(s) | 97, 785, 1210, 2302 |
| PmaCI | CACGTG | 1 cut(s) | 2123 |
| PmlI | CACGTG | 1 cut(s) | 2123 |
| PpsI | GAGTC | 4 cut(s) | 97, 785, 1210, 2302 |
| Ppu21I | YACGTR | 1 cut(s) | 2123 |
| PscI | ACATGT | 1 cut(s) | 1314 |
| PshBI | ATTAAT | 1 cut(s) | 195 |
| Psp124BI | GAGCTC | 1 cut(s) | 35 |
| Psp6I | CCWGG | 1 cut(s) | 1348 |
| PspCI | CACGTG | 1 cut(s) | 2123 |
| PspFI | CCCAGC | 2 cut(s) | 863, 1493 |
| PspGI | CCWGG | 1 cut(s) | 1348 |
| PspN4I | GGNNCC | 6 cut(s) | 139, 540, 951, 1347, 1971, 2325 |
| PspPI | GGNCC | 6 cut(s) | 48, 176, 217, 1006, 1345, 2333 |
| PstI | CTGCAG | 1 cut(s) | 2418 |
| PsuI | RGATCY | 5 cut(s) | 137, 843, 936, 998, 1733 |
| PvuI | CGATCG | 1 cut(s) | 108 |
| PvuII | CAGCTG | 2 cut(s) | 353, 713 |
| RsaI | GTAC | 5 cut(s) | 241, 304, 697, 1128, 1534 |
| RsaNI | GTAC | 5 cut(s) | 240, 303, 696, 1127, 1533 |
| RseI | CAYNNNNRTG | 4 cut(s) | 731, 737, 1639, 1922 |
| SacI | GAGCTC | 1 cut(s) | 35 |
| SaqAI | TTAA | 5 cut(s) | 195, 858, 1568, 1755, 1998 |
| SatI | GCNGC | 7 cut(s) | 313, 324, 1084, 1115, 1778, 2211, 2451 |
| Sau96I | GGNCC | 6 cut(s) | 48, 176, 217, 1006, 1345, 2333 |
| ScaI | AGTACT | 2 cut(s) | 241, 1128 |
| SchI | GAGTC | 4 cut(s) | 98, 785, 1211, 2303 |
| ScrFI | CCNGG | 2 cut(s) | 1350, 2282 |
| SduI | GDGCHC | 6 cut(s) | 35, 443, 1183, 1749, 2280, 2399 |
| SfaNI | GCATC | 5 cut(s) | 824, 1267, 1490, 2005, 2395 |
| SfcI | CTRYAG | 3 cut(s) | 552, 2374, 2414 |
| SinI | GGWCC | 6 cut(s) | 48, 176, 217, 1006, 1345, 2333 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 731, 737, 1639, 1922 |
| SmlI | CTYRAG | 4 cut(s) | 436, 611, 1100, 1168 |
| SmoI | CTYRAG | 4 cut(s) | 436, 611, 1100, 1168 |
| SseBI | AGGCCT | 1 cut(s) | 1453 |
| SsiI | CCGC | 6 cut(s) | 21, 132, 315, 488, 701, 1827 |
| SspMI | CTAG | 7 cut(s) | 944, 1355, 1421, 1478, 1490, 1760, 2298 |
| SstI | GAGCTC | 1 cut(s) | 35 |
| StuI | AGGCCT | 1 cut(s) | 1453 |
| StyD4I | CCNGG | 2 cut(s) | 1348, 2280 |
| StyI | CCWWGG | 1 cut(s) | 1448 |
| TaaI | ACNGT | 3 cut(s) | 307, 606, 1229 |
| TaiI | ACGT | 2 cut(s) | 2059, 2125 |
| TaqI | TCGA | 4 cut(s) | 87, 108, 1021, 1867 |
| TatI | WGTACW | 5 cut(s) | 239, 302, 695, 1126, 1532 |
| Tru1I | TTAA | 5 cut(s) | 195, 858, 1568, 1755, 1998 |
| Tru9I | TTAA | 5 cut(s) | 195, 858, 1568, 1755, 1998 |
| TscAI | CASTG | 8 cut(s) | 451, 835, 1234, 1804, 1924, 2160, 2197, 2423 |
| TseFI | GTSAC | 4 cut(s) | 79, 606, 2032, 2068 |
| TseI | GCWGC | 7 cut(s) | 312, 323, 1083, 1114, 1777, 2210, 2450 |
| Tsp45I | GTSAC | 4 cut(s) | 79, 606, 2032, 2068 |
| TspGWI | ACGGA | 3 cut(s) | 40, 150, 1779 |
| TspRI | CASTG | 8 cut(s) | 451, 835, 1234, 1804, 1924, 2160, 2197, 2423 |
| VpaK11BI | GGWCC | 6 cut(s) | 48, 176, 217, 1006, 1345, 2333 |
| VspI | ATTAAT | 1 cut(s) | 195 |
| XbaI | TCTAGA | 1 cut(s) | 943 |
| XceI | RCATGY | 3 cut(s) | 992, 1167, 1318 |
| XmiI | GTMKAC | 1 cut(s) | 601 |
| XmnI | GAANNNNTTC | 4 cut(s) | 342, 366, 1333, 1705 |
| XspI | CTAG | 7 cut(s) | 944, 1355, 1421, 1478, 1490, 1760, 2298 |
| ZrmI | AGTACT | 2 cut(s) | 241, 1128 |