pycom07g01030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0010078
Physical Location & Seq
Reverse (-)
849762 .. 850691
930 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g01030.1

Sequence Viewer

Length: 930 bp
ATGCAAGTCCTTGTGTATCCCTCACACTTCATCTACTGTCGCTTGAGAGGAAAGATTGTGTATGTGTTGGTGAGGTTAATGTGTTCGCTCGATCCTGTGGACTCGTCTGATTCAGAGAACCAAGCTAGTGCGGTGGAAAACTCAGCTGGGAGTTCTCTCATGGCCATGCTTGTGCCTACCCTTTTGCAATTCTGTAAAACAAGGGGTGCTAACCGAACACAGGACAAGCCAATTTCTGATACATGGGGAAAACAGAACTCTCTAGCGACTGTGTCAAAAGAAACCGATTCTACCAGTGTTGCAACTAAGATTCAGGAACAAGGAAAAGCCAGCATACCTGACCACCAAGAAGTAAAGATTCCAGATTTTAGTAAGGCTAGTACTAGTACTGCCCAGGTATGTATCCCGTCAAGAGTTGAAAGCGCCGTGGACCAGCTTTATTCTCGAATGGGCAGAATTGAGGATCTGTTTTTGAGGTTTGAAGAAAAGATGCTAAAACCGATAAGCAGCATTGAGGCAAGGCTTGAAAGGGTAGAGCAGCAACTTGAAGTACTGGCGAACAAATCACAGAATTCTGAATTGCCAACATGCGCAAGATTCTATGCTTCTTCTTTCTCATGCAATGAGTCTGAGTCTAACTCTTGCTATAATAGTGGAAATGATTATCACCGTTGCGAGGCATTTGAATCAGGTGAGAAGGACATTCAACCAGATGCACCCCCGACCACAGCTTATGAAATGTCTGCTTCGGTAAATTCCACCCATTTGCTTCCAAGTCTGGTAGTAACTGCTCCTGAATTTTTAAATGGTGATGATGACGAGGACGAAGAAGATCACGGATCAGATGTTGTGATAGGTTCATCAGAAAAACCAAGGCCTGCTTGGACAATAGATGATGCTTTAGCATCTGCACTAGCGGGCATGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

310

Amino Acids

33.93

Weight (kDa)

4.68

Isoelectric Point (pI)

41.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010078)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47940
fragaria_vesca FvH4_5g06191 FvH4_7g01170 FvH4_7g01170 FvH4_7g01170
malus_domestica MD00G1112200.v1.1 MD02G1309200.v1.1 MD07G1012500.v1.1
prunus_persica Prupe.2G015000_v2.0.a1
pyrus_communis pycom02g26050 pycom07g01030
rosa_chinensis RchiOBHm_Chr1g0316471
rosa_laevigata RLG00000030670
rosa_multiflora Rmu_sc0006790.1_g000005
rosa_roxburghii Rroxscaffold_4G00330970
rosa_rugosa Rorug01G0011100
rosa_samantha Rh1AG020600 Rh1BG015900 Rh1CG018900 Rh1DG016000
rosa_wichuraiana Rw1G001350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 592
AciI CCGC 2 cut(s) 131, 917
AclWI GGATC 3 cut(s) 86, 471, 847
AcoI YGGCCR 1 cut(s) 162
AcsI RAATTY 3 cut(s) 571, 754, 797
AfaI GTAC 3 cut(s) 382, 388, 552
AfiI CCNNNNNNNGG 2 cut(s) 220, 676
AgsI TTSAA 6 cut(s) 419, 482, 527, 548, 686, 707
AhlI ACTAGT 1 cut(s) 383
AjnI CCWGG 1 cut(s) 393
AluBI AGCT 4 cut(s) 125, 146, 436, 731
AluI AGCT 4 cut(s) 125, 146, 436, 731
AlwI GGATC 3 cut(s) 86, 471, 847
AoxI GGCC 2 cut(s) 162, 875
ApeKI GCWGC 2 cut(s) 507, 538
ApoI RAATTY 3 cut(s) 571, 754, 797
AspLEI GCGC 2 cut(s) 425, 593
AspS9I GGNCC 1 cut(s) 430
AsuHPI GGTGA 4 cut(s) 82, 659, 704, 821
AvaII GGWCC 1 cut(s) 430
BalI TGGCCA 1 cut(s) 164
BbvI GCAGC 2 cut(s) 519, 550
BceAI ACGGC 1 cut(s) 410
BciT130I CCWGG 1 cut(s) 395
BciVI GTATCC 2 cut(s) 27, 413
BcuI ACTAGT 1 cut(s) 383
BfaI CTAG 5 cut(s) 126, 263, 378, 384, 914
BfoI RGCGCY 1 cut(s) 426
BfuI GTATCC 2 cut(s) 27, 413
BisI GCNGC 2 cut(s) 508, 539
BlsI GCNGC 2 cut(s) 509, 540
BmcAI AGTACT 3 cut(s) 382, 388, 552
Bme1390I CCNGG 1 cut(s) 395
Bme18I GGWCC 1 cut(s) 430
BmgT120I GGNCC 1 cut(s) 430
BmrFI CCNGG 1 cut(s) 395
BmsI GCATC 4 cut(s) 480, 703, 886, 914
BplI GAGNNNNNCTC 2 cut(s) 623, 655
BpuEI CTTGAG 1 cut(s) 64
BsaJI CCNNGG 3 cut(s) 393, 426, 872
Bsc4I CCNNNNNNNGG 2 cut(s) 220, 676
Bse1I ACTGG 2 cut(s) 294, 558
Bse3DI GCAATG 1 cut(s) 628
BseBI CCWGG 1 cut(s) 395
BseDI CCNNGG 3 cut(s) 393, 426, 872
BseLI CCNNNNNNNGG 2 cut(s) 220, 676
BseMI GCAATG 1 cut(s) 628
BseMII CTCAG 2 cut(s) 156, 621
BseNI ACTGG 2 cut(s) 294, 558
BseXI GCAGC 2 cut(s) 519, 550
BseYI CCCAGC 1 cut(s) 146
BsgI GTGCAG 1 cut(s) 894
BshFI GGCC 2 cut(s) 164, 877
BslI CCNNNNNNNGG 2 cut(s) 220, 676
BsnI GGCC 2 cut(s) 164, 877
Bsp143I GATC 4 cut(s) 91, 463, 832, 839
BspACI CCGC 2 cut(s) 131, 917
BspANI GGCC 2 cut(s) 164, 877
BspCNI CTCAG 2 cut(s) 155, 622
BspPI GGATC 3 cut(s) 86, 471, 847
BsrDI GCAATG 1 cut(s) 628
BsrI ACTGG 2 cut(s) 294, 558
BssECI CCNNGG 3 cut(s) 393, 426, 872
BssMI GATC 4 cut(s) 91, 463, 832, 839
BssT1I CCWWGG 1 cut(s) 872
Bst2UI CCWGG 1 cut(s) 395
Bst4CI ACNGT 3 cut(s) 38, 271, 671
BstC8I GCNNGC 3 cut(s) 331, 879, 919
BstDEI CTNAG 4 cut(s) 142, 306, 630, 927
BstDSI CCRYGG 1 cut(s) 426
BstH2I RGCGCY 1 cut(s) 426
BstHHI GCGC 2 cut(s) 425, 593
BstKTI GATC 4 cut(s) 94, 466, 835, 842
BstMBI GATC 4 cut(s) 91, 463, 832, 839
BstNI CCWGG 1 cut(s) 395
BstNSI RCATGY 2 cut(s) 591, 925
BstSCI CCNGG 1 cut(s) 393
BstV1I GCAGC 2 cut(s) 519, 550
BstX2I RGATCY 1 cut(s) 463
BstYI RGATCY 1 cut(s) 463
BsuI GTATCC 2 cut(s) 27, 413
BsuRI GGCC 2 cut(s) 164, 877
BtgI CCRYGG 1 cut(s) 426
BtsIMutI CAGTG 1 cut(s) 301
Cac8I GCNNGC 3 cut(s) 331, 879, 919
CfoI GCGC 2 cut(s) 425, 593
Cfr13I GGNCC 1 cut(s) 430
Csp6I GTAC 3 cut(s) 381, 387, 551
CviAII CATG 6 cut(s) 160, 166, 243, 588, 618, 922
CviQI GTAC 3 cut(s) 381, 387, 551
DdeI CTNAG 4 cut(s) 142, 306, 630, 927
DpnI GATC 4 cut(s) 93, 465, 834, 841
DpnII GATC 4 cut(s) 91, 463, 832, 839
DraI TTTAAA 1 cut(s) 804
EaeI YGGCCR 1 cut(s) 162
Eco130I CCWWGG 1 cut(s) 872
Eco147I AGGCCT 1 cut(s) 877
Eco47I GGWCC 1 cut(s) 430
EcoRI GAATTC 1 cut(s) 571
EcoRII CCWGG 1 cut(s) 393
EcoT14I CCWWGG 1 cut(s) 872
ErhI CCWWGG 1 cut(s) 872
FaeI CATG 6 cut(s) 163, 169, 246, 591, 621, 925
FalI AAGNNNNNCTT 2 cut(s) 865, 897
FatI CATG 6 cut(s) 159, 165, 242, 587, 617, 921
FauI CCCGC 1 cut(s) 910
Fnu4HI GCNGC 2 cut(s) 508, 539
Fsp4HI GCNGC 2 cut(s) 508, 539
FspBI CTAG 5 cut(s) 126, 263, 378, 384, 914
FspI TGCGCA 1 cut(s) 592
GlaI GCGC 2 cut(s) 424, 592
GluI GCNGC 2 cut(s) 508, 539
GsaI CCCAGC 1 cut(s) 150
HaeII RGCGCY 1 cut(s) 426
HaeIII GGCC 2 cut(s) 164, 877
HhaI GCGC 2 cut(s) 425, 593
Hin1II CATG 6 cut(s) 163, 169, 246, 591, 621, 925
Hin6I GCGC 2 cut(s) 423, 591
HinP1I GCGC 2 cut(s) 423, 591
HinfI GANTC 9 cut(s) 101, 110, 287, 310, 358, 597, 626, 632, 686
HphI GGTGA 4 cut(s) 82, 659, 704, 821
Hpy166II GTNNAC 2 cut(s) 100, 430
Hpy188I TCNGA 7 cut(s) 109, 115, 238, 577, 631, 844, 865
Hpy188III TCNNGA 5 cut(s) 314, 362, 411, 444, 794
Hpy8I GTNNAC 2 cut(s) 100, 430
HpyAV CCTTC 1 cut(s) 691
HpyCH4III ACNGT 3 cut(s) 38, 271, 671
HpyCH4V TGCA 6 cut(s) 4, 187, 302, 621, 716, 911
HpyF3I CTNAG 4 cut(s) 142, 306, 630, 927
Hsp92II CATG 6 cut(s) 163, 169, 246, 591, 621, 925
HspAI GCGC 2 cut(s) 423, 591
Kzo9I GATC 4 cut(s) 91, 463, 832, 839
LmnI GCTCC 1 cut(s) 796
Lsp1109I GCAGC 2 cut(s) 519, 550
LweI GCATC 4 cut(s) 480, 703, 886, 914
MaeI CTAG 5 cut(s) 126, 263, 378, 384, 914
MaeIII GTNAC 1 cut(s) 784
MalI GATC 4 cut(s) 93, 465, 834, 841
MboI GATC 4 cut(s) 91, 463, 832, 839
MboII GAAGA 4 cut(s) 494, 600, 839, 842
MflI RGATCY 1 cut(s) 463
MlsI TGGCCA 1 cut(s) 164
MluCI AATT 7 cut(s) 188, 231, 456, 571, 578, 754, 797
MluNI TGGCCA 1 cut(s) 164
MlyI GAGTC 3 cut(s) 95, 635, 641
MnlI CCTC 8 cut(s) 31, 41, 66, 454, 468, 508, 670, 814
Mox20I TGGCCA 1 cut(s) 164
MscI TGGCCA 1 cut(s) 164
MseI TTAA 2 cut(s) 77, 803
MslI CAYNNNNRTG 2 cut(s) 164, 170
Msp20I TGGCCA 1 cut(s) 164
MspA1I CMGCKG 1 cut(s) 146
MspR9I CCNGG 1 cut(s) 395
MvaI CCWGG 1 cut(s) 395
NdeII GATC 4 cut(s) 91, 463, 832, 839
NlaIII CATG 6 cut(s) 163, 169, 246, 591, 621, 925
NsbI TGCGCA 1 cut(s) 592
NspI RCATGY 2 cut(s) 591, 925
PceI AGGCCT 1 cut(s) 877
PfeI GAWTC 6 cut(s) 110, 287, 310, 358, 597, 686
PflFI GACNNNGTC 1 cut(s) 271
PkrI GCNGC 2 cut(s) 509, 540
PleI GAGTC 3 cut(s) 95, 634, 640
PpsI GAGTC 3 cut(s) 95, 634, 640
Psp6I CCWGG 1 cut(s) 393
PspFI CCCAGC 1 cut(s) 146
PspGI CCWGG 1 cut(s) 393
PspPI GGNCC 1 cut(s) 430
PsuI RGATCY 1 cut(s) 463
PsyI GACNNNGTC 1 cut(s) 271
PvuII CAGCTG 1 cut(s) 146
RsaI GTAC 3 cut(s) 382, 388, 552
RsaNI GTAC 3 cut(s) 381, 387, 551
RseI CAYNNNNRTG 2 cut(s) 164, 170
SaqAI TTAA 2 cut(s) 77, 803
SatI GCNGC 2 cut(s) 508, 539
Sau3AI GATC 4 cut(s) 91, 463, 832, 839
Sau96I GGNCC 1 cut(s) 430
ScaI AGTACT 3 cut(s) 382, 388, 552
SchI GAGTC 3 cut(s) 95, 635, 641
ScrFI CCNGG 1 cut(s) 395
SfaNI GCATC 4 cut(s) 480, 703, 886, 914
SinI GGWCC 1 cut(s) 430
SmiMI CAYNNNNRTG 2 cut(s) 164, 170
SmlI CTYRAG 1 cut(s) 43
SmoI CTYRAG 1 cut(s) 43
SpeI ACTAGT 1 cut(s) 383
Sse9I AATT 7 cut(s) 188, 231, 456, 571, 578, 754, 797
SseBI AGGCCT 1 cut(s) 877
SsiI CCGC 2 cut(s) 131, 917
SspMI CTAG 5 cut(s) 126, 263, 378, 384, 914
StuI AGGCCT 1 cut(s) 877
StyD4I CCNGG 1 cut(s) 393
StyI CCWWGG 1 cut(s) 872
TaaI ACNGT 3 cut(s) 38, 271, 671
TaqI TCGA 2 cut(s) 90, 445
TasI AATT 7 cut(s) 188, 231, 456, 571, 578, 754, 797
TatI WGTACW 3 cut(s) 380, 386, 550
TfiI GAWTC 6 cut(s) 110, 287, 310, 358, 597, 686
Tru1I TTAA 2 cut(s) 77, 803
Tru9I TTAA 2 cut(s) 77, 803
TscAI CASTG 1 cut(s) 301
TseI GCWGC 2 cut(s) 507, 538
TspDTI ATGAA 3 cut(s) 19, 750, 849
TspGWI ACGGA 1 cut(s) 852
TspRI CASTG 1 cut(s) 301
Tth111I GACNNNGTC 1 cut(s) 271
VpaK11BI GGWCC 1 cut(s) 430
XapI RAATTY 3 cut(s) 571, 754, 797
XceI RCATGY 2 cut(s) 591, 925
XcmI CCANNNNNNNNNTGG 1 cut(s) 879
XspI CTAG 5 cut(s) 126, 263, 378, 384, 914
ZrmI AGTACT 3 cut(s) 382, 388, 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.