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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G47940 |
| fragaria_vesca | FvH4_5g06191 FvH4_7g01170 FvH4_7g01170 FvH4_7g01170 |
| malus_domestica | MD00G1112200.v1.1 MD02G1309200.v1.1 MD07G1012500.v1.1 |
| prunus_persica | Prupe.2G015000_v2.0.a1 |
| pyrus_communis | pycom02g26050 pycom07g01030 |
| rosa_chinensis | RchiOBHm_Chr1g0316471 |
| rosa_laevigata | RLG00000030670 |
| rosa_multiflora | Rmu_sc0006790.1_g000005 |
| rosa_roxburghii | Rroxscaffold_4G00330970 |
| rosa_rugosa | Rorug01G0011100 |
| rosa_samantha | Rh1AG020600 Rh1BG015900 Rh1CG018900 Rh1DG016000 |
| rosa_wichuraiana | Rw1G001350 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 2516 |
| Acc36I | ACCTGC | 1 cut(s) | 400 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 231, 2054 |
| AccI | GTMKAC | 1 cut(s) | 796 |
| AciI | CCGC | 5 cut(s) | 28, 207, 222, 246, 2526 |
| AclWI | GGATC | 3 cut(s) | 848, 1233, 2039 |
| AcoI | YGGCCR | 1 cut(s) | 924 |
| AcsI | RAATTY | 8 cut(s) | 82, 565, 734, 901, 1559, 1897, 2301, 2354 |
| AcuI | CTGAAG | 3 cut(s) | 611, 1494, 1887 |
| AcvI | CACGTG | 1 cut(s) | 25 |
| AcyI | GRCGYC | 1 cut(s) | 2513 |
| AfaI | GTAC | 4 cut(s) | 427, 892, 1150, 1314 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 231, 359, 1438, 2054 |
| AflII | CTTAAG | 1 cut(s) | 62 |
| AflIII | ACRYGT | 2 cut(s) | 22, 1500 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2512 |
| AhlI | ACTAGT | 1 cut(s) | 1145 |
| AjiI | CACGTC | 1 cut(s) | 1503 |
| AjnI | CCWGG | 1 cut(s) | 230 |
| AleI | CACNNNNGTG | 1 cut(s) | 537 |
| AluBI | AGCT | 9 cut(s) | 124, 746, 1185, 1198, 1685, 1748, 1850, 2373, 2586 |
| AluI | AGCT | 9 cut(s) | 124, 746, 1185, 1198, 1685, 1748, 1850, 2373, 2586 |
| Alw21I | GWGCWC | 1 cut(s) | 2469 |
| Alw26I | GTCTC | 8 cut(s) | 271, 291, 296, 668, 673, 2103, 2612, 2639 |
| AlwI | GGATC | 3 cut(s) | 848, 1233, 2039 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2231, 2432 |
| Ama87I | CYCGRG | 3 cut(s) | 254, 432, 513 |
| AoxI | GGCC | 4 cut(s) | 361, 924, 1643, 2476 |
| ApaI | GGGCCC | 1 cut(s) | 365 |
| ApeKI | GCWGC | 6 cut(s) | 121, 509, 1269, 1300, 2312, 2627 |
| ApoI | RAATTY | 8 cut(s) | 82, 565, 734, 901, 1559, 1897, 2301, 2354 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 552 |
| AspS9I | GGNCC | 9 cut(s) | 234, 361, 362, 403, 595, 1978, 2140, 2477, 2522 |
| AsuII | TTCGAA | 2 cut(s) | 421, 2161 |
| AvaI | CYCGRG | 3 cut(s) | 254, 432, 513 |
| AvaII | GGWCC | 6 cut(s) | 234, 403, 595, 1978, 2140, 2522 |
| BaeGI | GKGCMC | 1 cut(s) | 365 |
| BalI | TGGCCA | 1 cut(s) | 926 |
| BanII | GRGCYC | 1 cut(s) | 365 |
| BbrPI | CACGTG | 1 cut(s) | 25 |
| BbsI | GAAGAC | 2 cut(s) | 528, 2058 |
| Bbv12I | GWGCWC | 1 cut(s) | 2469 |
| BbvI | GCAGC | 6 cut(s) | 133, 496, 1281, 1312, 2299, 2639 |
| BccI | CCATC | 5 cut(s) | 355, 607, 1766, 1964, 2186 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2261, 2295 |
| BciT130I | CCWGG | 1 cut(s) | 232 |
| BciVI | GTATCC | 2 cut(s) | 790, 1175 |
| BclI | TGATCA | 1 cut(s) | 1102 |
| BcoDI | GTCTC | 8 cut(s) | 271, 291, 296, 668, 673, 2103, 2612, 2639 |
| BcuI | ACTAGT | 1 cut(s) | 1145 |
| BfaI | CTAG | 3 cut(s) | 1025, 1146, 1682 |
| BfmI | CTRYAG | 2 cut(s) | 747, 2563 |
| BfrI | CTTAAG | 1 cut(s) | 62 |
| BfuAI | ACCTGC | 1 cut(s) | 400 |
| BfuI | GTATCC | 2 cut(s) | 790, 1175 |
| BisI | GCNGC | 6 cut(s) | 122, 510, 1270, 1301, 2313, 2628 |
| BlsI | GCNGC | 6 cut(s) | 123, 511, 1271, 1302, 2314, 2629 |
| BmcAI | AGTACT | 3 cut(s) | 427, 1150, 1314 |
| Bme1390I | CCNGG | 1 cut(s) | 232 |
| Bme18I | GGWCC | 6 cut(s) | 234, 403, 595, 1978, 2140, 2522 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2512 |
| BmeT110I | CYCGRG | 3 cut(s) | 254, 432, 513 |
| BmgBI | CACGTC | 1 cut(s) | 1503 |
| BmgT120I | GGNCC | 9 cut(s) | 234, 361, 362, 403, 595, 1978, 2140, 2477, 2522 |
| BmiI | GGNNCC | 6 cut(s) | 250, 363, 597, 1122, 2142, 2524 |
| BmrFI | CCNGG | 1 cut(s) | 232 |
| BmrI | ACTGGG | 2 cut(s) | 661, 2465 |
| BmsI | GCATC | 7 cut(s) | 754, 1242, 1465, 1654, 1682, 2206, 2269 |
| BmuI | ACTGGG | 2 cut(s) | 661, 2465 |
| BpiI | GAAGAC | 2 cut(s) | 528, 2058 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1385, 1417 |
| Bpu14I | TTCGAA | 2 cut(s) | 421, 2161 |
| BpuEI | CTTGAG | 2 cut(s) | 827, 1339 |
| Bsa29I | ATCGAT | 1 cut(s) | 294 |
| BsaAI | YACGTR | 1 cut(s) | 25 |
| BsaHI | GRCGYC | 1 cut(s) | 2513 |
| BsaJI | CCNNGG | 3 cut(s) | 894, 1432, 1840 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2422, 2452 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 231, 359, 1438, 2054 |
| Bse1I | ACTGG | 7 cut(s) | 656, 857, 1320, 1980, 2167, 2339, 2471 |
| Bse3DI | GCAATG | 3 cut(s) | 481, 504, 1390 |
| BseBI | CCWGG | 1 cut(s) | 232 |
| BseCI | ATCGAT | 1 cut(s) | 294 |
| BseDI | CCNNGG | 3 cut(s) | 894, 1432, 1840 |
| BseGI | GGATG | 2 cut(s) | 599, 2353 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 231, 359, 1438, 2054 |
| BseMI | GCAATG | 3 cut(s) | 481, 504, 1390 |
| BseMII | CTCAG | 5 cut(s) | 684, 1169, 2112, 2310, 2378 |
| BseNI | ACTGG | 7 cut(s) | 656, 857, 1320, 1980, 2167, 2339, 2471 |
| BseRI | GAGGAG | 3 cut(s) | 1598, 1601, 2232 |
| BseSI | GKGCMC | 1 cut(s) | 365 |
| BseXI | GCAGC | 6 cut(s) | 133, 496, 1281, 1312, 2299, 2639 |
| BseYI | CCCAGC | 1 cut(s) | 908 |
| BsgI | GTGCAG | 5 cut(s) | 199, 323, 472, 711, 1662 |
| Bsh1285I | CGRYCG | 1 cut(s) | 294 |
| BshFI | GGCC | 4 cut(s) | 363, 926, 1645, 2478 |
| BshVI | ATCGAT | 1 cut(s) | 294 |
| BsiEI | CGRYCG | 1 cut(s) | 294 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2469 |
| BsiHKCI | CYCGRG | 3 cut(s) | 254, 432, 513 |
| BslFI | GGGAC | 2 cut(s) | 2508, 2524 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 231, 359, 1438, 2054 |
| BsmAI | GTCTC | 8 cut(s) | 271, 291, 296, 668, 673, 2103, 2612, 2639 |
| BsmBI | CGTCTC | 1 cut(s) | 271 |
| BsmFI | GGGAC | 2 cut(s) | 2508, 2524 |
| BsmI | GAATGC | 1 cut(s) | 49 |
| BsnI | GGCC | 4 cut(s) | 363, 926, 1645, 2478 |
| BsoBI | CYCGRG | 3 cut(s) | 254, 432, 513 |
| Bsp119I | TTCGAA | 2 cut(s) | 421, 2161 |
| Bsp120I | GGGCCC | 1 cut(s) | 361 |
| Bsp1286I | GDGCHC | 2 cut(s) | 365, 2469 |
| Bsp143I | GATC | 8 cut(s) | 186, 291, 372, 853, 1102, 1225, 1600, 2044 |
| BspACI | CCGC | 5 cut(s) | 28, 207, 222, 246, 2526 |
| BspANI | GGCC | 4 cut(s) | 363, 926, 1645, 2478 |
| BspCNI | CTCAG | 5 cut(s) | 683, 1168, 2113, 2311, 2377 |
| BspDI | ATCGAT | 1 cut(s) | 294 |
| BspLI | GGNNCC | 6 cut(s) | 250, 363, 597, 1122, 2142, 2524 |
| BspMI | ACCTGC | 1 cut(s) | 400 |
| BspPI | GGATC | 3 cut(s) | 848, 1233, 2039 |
| BspT104I | TTCGAA | 2 cut(s) | 421, 2161 |
| BspTI | CTTAAG | 1 cut(s) | 62 |
| BsrDI | GCAATG | 3 cut(s) | 481, 504, 1390 |
| BsrI | ACTGG | 7 cut(s) | 656, 857, 1320, 1980, 2167, 2339, 2471 |
| BssECI | CCNNGG | 3 cut(s) | 894, 1432, 1840 |
| BssMI | GATC | 8 cut(s) | 186, 291, 372, 853, 1102, 1225, 1600, 2044 |
| BssNI | GRCGYC | 1 cut(s) | 2513 |
| BssT1I | CCWWGG | 1 cut(s) | 1840 |
| Bst2UI | CCWGG | 1 cut(s) | 232 |
| Bst4CI | ACNGT | 8 cut(s) | 238, 379, 493, 641, 801, 895, 1966, 2537 |
| Bst6I | CTCTTC | 1 cut(s) | 2256 |
| BstACI | GRCGYC | 1 cut(s) | 2513 |
| BstAFI | CTTAAG | 1 cut(s) | 62 |
| BstBAI | YACGTR | 1 cut(s) | 25 |
| BstBI | TTCGAA | 2 cut(s) | 421, 2161 |
| BstC8I | GCNNGC | 4 cut(s) | 244, 1083, 1093, 1647 |
| BstDEI | CTNAG | 6 cut(s) | 670, 1068, 1155, 2121, 2319, 2364 |
| BstDSI | CCRYGG | 2 cut(s) | 894, 1432 |
| BstEII | GGTNACC | 1 cut(s) | 2594 |
| BstF5I | GGATG | 2 cut(s) | 599, 2353 |
| BstKTI | GATC | 8 cut(s) | 189, 294, 375, 856, 1105, 1228, 1603, 2047 |
| BstMAI | GTCTC | 8 cut(s) | 271, 291, 296, 668, 673, 2103, 2612, 2639 |
| BstMBI | GATC | 8 cut(s) | 186, 291, 372, 853, 1102, 1225, 1600, 2044 |
| BstMCI | CGRYCG | 1 cut(s) | 294 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 25, 495 |
| BstNI | CCWGG | 1 cut(s) | 232 |
| BstNSI | RCATGY | 6 cut(s) | 529, 1353, 1727, 2065, 2312, 2607 |
| BstPI | GGTNACC | 1 cut(s) | 2594 |
| BstSCI | CCNGG | 1 cut(s) | 230 |
| BstSFI | CTRYAG | 2 cut(s) | 747, 2563 |
| BstSLI | GKGCMC | 1 cut(s) | 365 |
| BstV1I | GCAGC | 6 cut(s) | 133, 496, 1281, 1312, 2299, 2639 |
| BstV2I | GAAGAC | 2 cut(s) | 528, 2058 |
| BstX2I | RGATCY | 2 cut(s) | 1225, 2044 |
| BstYI | RGATCY | 2 cut(s) | 1225, 2044 |
| Bsu15I | ATCGAT | 1 cut(s) | 294 |
| BsuI | GTATCC | 2 cut(s) | 790, 1175 |
| BsuRI | GGCC | 4 cut(s) | 363, 926, 1645, 2478 |
| BsuTUI | ATCGAT | 1 cut(s) | 294 |
| BtgI | CCRYGG | 2 cut(s) | 894, 1432 |
| BtrI | CACGTC | 1 cut(s) | 1503 |
| BtsCI | GGATG | 2 cut(s) | 599, 2353 |
| BtsIMutI | CAGTG | 5 cut(s) | 489, 646, 1063, 2118, 2433 |
| BveI | ACCTGC | 1 cut(s) | 400 |
| Cac8I | GCNNGC | 4 cut(s) | 244, 1083, 1093, 1647 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2231, 2432 |
| Cfr13I | GGNCC | 9 cut(s) | 234, 361, 362, 403, 595, 1978, 2140, 2477, 2522 |
| ClaI | ATCGAT | 1 cut(s) | 294 |
| CseI | GACGC | 2 cut(s) | 253, 312 |
| Csp6I | GTAC | 4 cut(s) | 426, 891, 1149, 1313 |
| CviQI | GTAC | 4 cut(s) | 426, 891, 1149, 1313 |
| DdeI | CTNAG | 6 cut(s) | 670, 1068, 1155, 2121, 2319, 2364 |
| DpnI | GATC | 8 cut(s) | 188, 293, 374, 855, 1104, 1227, 1602, 2046 |
| DpnII | GATC | 8 cut(s) | 186, 291, 372, 853, 1102, 1225, 1600, 2044 |
| DraI | TTTAAA | 1 cut(s) | 1761 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2512 |
| EaeI | YGGCCR | 1 cut(s) | 924 |
| Eam1104I | CTCTTC | 1 cut(s) | 2256 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2512 |
| EarI | CTCTTC | 1 cut(s) | 2256 |
| EciI | GGCGGA | 1 cut(s) | 211 |
| Eco130I | CCWWGG | 1 cut(s) | 1840 |
| Eco147I | AGGCCT | 1 cut(s) | 1645 |
| Eco24I | GRGCYC | 1 cut(s) | 365 |
| Eco47I | GGWCC | 6 cut(s) | 234, 403, 595, 1978, 2140, 2522 |
| Eco57I | CTGAAG | 3 cut(s) | 611, 1494, 1887 |
| Eco72I | CACGTG | 1 cut(s) | 25 |
| Eco88I | CYCGRG | 3 cut(s) | 254, 432, 513 |
| Eco91I | GGTNACC | 1 cut(s) | 2594 |
| EcoO109I | RGGNCCY | 2 cut(s) | 362, 595 |
| EcoO65I | GGTNACC | 1 cut(s) | 2594 |
| EcoRII | CCWGG | 1 cut(s) | 230 |
| EcoT14I | CCWWGG | 1 cut(s) | 1840 |
| EcoT38I | GRGCYC | 1 cut(s) | 365 |
| ErhI | CCWWGG | 1 cut(s) | 1840 |
| Esp3I | CGTCTC | 1 cut(s) | 271 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 513, 545, 1633, 1665, 1863, 1895 |
| FaqI | GGGAC | 2 cut(s) | 2508, 2524 |
| FauI | CCCGC | 1 cut(s) | 2533 |
| FbaI | TGATCA | 1 cut(s) | 1102 |
| FblI | GTMKAC | 1 cut(s) | 796 |
| Fnu4HI | GCNGC | 6 cut(s) | 122, 510, 1270, 1301, 2313, 2628 |
| FokI | GGATG | 2 cut(s) | 586, 2360 |
| FriOI | GRGCYC | 1 cut(s) | 365 |
| Fsp4HI | GCNGC | 6 cut(s) | 122, 510, 1270, 1301, 2313, 2628 |
| FspBI | CTAG | 3 cut(s) | 1025, 1146, 1682 |
| GluI | GCNGC | 6 cut(s) | 122, 510, 1270, 1301, 2313, 2628 |
| GsaI | CCCAGC | 1 cut(s) | 912 |
| HaeIII | GGCC | 4 cut(s) | 363, 926, 1645, 2478 |
| HgaI | GACGC | 2 cut(s) | 253, 312 |
| Hin1I | GRCGYC | 1 cut(s) | 2513 |
| Hpy166II | GTNNAC | 5 cut(s) | 797, 1192, 1321, 1877, 2506 |
| Hpy8I | GTNNAC | 5 cut(s) | 797, 1192, 1321, 1877, 2506 |
| Hpy99I | CGWCG | 5 cut(s) | 182, 185, 242, 709, 1583 |
| HpyAV | CCTTC | 7 cut(s) | 143, 143, 542, 586, 1453, 1994, 2451 |
| HpyCH4III | ACNGT | 8 cut(s) | 238, 379, 493, 641, 801, 895, 1966, 2537 |
| HpyCH4IV | ACGT | 3 cut(s) | 24, 1502, 2513 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 25, 495 |
| HpyF3I | CTNAG | 6 cut(s) | 670, 1068, 1155, 2121, 2319, 2364 |
| HpySE526I | ACGT | 3 cut(s) | 24, 1502, 2513 |
| Hsp92I | GRCGYC | 1 cut(s) | 2513 |
| Ksp22I | TGATCA | 1 cut(s) | 1102 |
| Kzo9I | GATC | 8 cut(s) | 186, 291, 372, 853, 1102, 1225, 1600, 2044 |
| LmnI | GCTCC | 4 cut(s) | 1078, 1558, 1753, 2472 |
| Lsp1109I | GCAGC | 6 cut(s) | 133, 496, 1281, 1312, 2299, 2639 |
| LweI | GCATC | 7 cut(s) | 754, 1242, 1465, 1654, 1682, 2206, 2269 |
| MaeI | CTAG | 3 cut(s) | 1025, 1146, 1682 |
| MaeII | ACGT | 3 cut(s) | 24, 1502, 2513 |
| MaeIII | GTNAC | 9 cut(s) | 54, 1170, 1546, 2169, 2254, 2375, 2428, 2456, 2594 |
| MalI | GATC | 8 cut(s) | 188, 293, 374, 855, 1104, 1227, 1602, 2046 |
| MboI | GATC | 8 cut(s) | 186, 291, 372, 853, 1102, 1225, 1600, 2044 |
| MfeI | CAATTG | 2 cut(s) | 710, 1656 |
| MflI | RGATCY | 2 cut(s) | 1225, 2044 |
| MhlI | GDGCHC | 2 cut(s) | 365, 2469 |
| MlsI | TGGCCA | 1 cut(s) | 926 |
| MluNI | TGGCCA | 1 cut(s) | 926 |
| MlyI | GAGTC | 6 cut(s) | 58, 284, 298, 444, 1397, 1403 |
| MmeI | TCCRAC | 1 cut(s) | 2295 |
| Mox20I | TGGCCA | 1 cut(s) | 926 |
| MroXI | GAANNNNTTC | 1 cut(s) | 552 |
| MscI | TGGCCA | 1 cut(s) | 926 |
| MseI | TTAA | 9 cut(s) | 63, 117, 381, 1131, 1743, 1760, 2237, 2408, 2495 |
| MslI | CAYNNNNRTG | 3 cut(s) | 537, 926, 932 |
| Msp20I | TGGCCA | 1 cut(s) | 926 |
| MspA1I | CMGCKG | 1 cut(s) | 1198 |
| MspCI | CTTAAG | 1 cut(s) | 62 |
| MspR9I | CCNGG | 1 cut(s) | 232 |
| MunI | CAATTG | 2 cut(s) | 710, 1656 |
| Mva1269I | GAATGC | 1 cut(s) | 49 |
| MvaI | CCWGG | 1 cut(s) | 232 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 25, 495 |
| NdeII | GATC | 8 cut(s) | 186, 291, 372, 853, 1102, 1225, 1600, 2044 |
| NlaIV | GGNNCC | 6 cut(s) | 250, 363, 597, 1122, 2142, 2524 |
| NmuCI | GTSAC | 6 cut(s) | 1170, 2254, 2375, 2428, 2456, 2594 |
| NspI | RCATGY | 6 cut(s) | 529, 1353, 1727, 2065, 2312, 2607 |
| NspV | TTCGAA | 2 cut(s) | 421, 2161 |
| OliI | CACNNNNGTG | 1 cut(s) | 537 |
| PaeR7I | CTCGAG | 1 cut(s) | 254 |
| PceI | AGGCCT | 1 cut(s) | 1645 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 186, 195, 261 |
| PctI | GAATGC | 1 cut(s) | 49 |
| PdmI | GAANNNNTTC | 1 cut(s) | 552 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 231, 2054 |
| PkrI | GCNGC | 6 cut(s) | 123, 511, 1271, 1302, 2314, 2629 |
| Ple19I | CGATCG | 1 cut(s) | 294 |
| PleI | GAGTC | 6 cut(s) | 57, 283, 298, 443, 1396, 1402 |
| PmaCI | CACGTG | 1 cut(s) | 25 |
| PmlI | CACGTG | 1 cut(s) | 25 |
| PpsI | GAGTC | 6 cut(s) | 57, 283, 298, 443, 1396, 1402 |
| Ppu21I | YACGTR | 1 cut(s) | 25 |
| PpuMI | RGGWCCY | 1 cut(s) | 595 |
| Psp5II | RGGWCCY | 1 cut(s) | 595 |
| Psp6I | CCWGG | 1 cut(s) | 230 |
| PspCI | CACGTG | 1 cut(s) | 25 |
| PspEI | GGTNACC | 1 cut(s) | 2594 |
| PspFI | CCCAGC | 1 cut(s) | 908 |
| PspGI | CCWGG | 1 cut(s) | 230 |
| PspN4I | GGNNCC | 6 cut(s) | 250, 363, 597, 1122, 2142, 2524 |
| PspOMI | GGGCCC | 1 cut(s) | 361 |
| PspPI | GGNCC | 9 cut(s) | 234, 361, 362, 403, 595, 1978, 2140, 2477, 2522 |
| PspPPI | RGGWCCY | 1 cut(s) | 595 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2231, 2432 |
| PsuI | RGATCY | 2 cut(s) | 1225, 2044 |
| PvuI | CGATCG | 1 cut(s) | 294 |
| PvuII | CAGCTG | 1 cut(s) | 1198 |
| RsaI | GTAC | 4 cut(s) | 427, 892, 1150, 1314 |
| RsaNI | GTAC | 4 cut(s) | 426, 891, 1149, 1313 |
| RseI | CAYNNNNRTG | 3 cut(s) | 537, 926, 932 |
| SaqAI | TTAA | 9 cut(s) | 63, 117, 381, 1131, 1743, 1760, 2237, 2408, 2495 |
| SatI | GCNGC | 6 cut(s) | 122, 510, 1270, 1301, 2313, 2628 |
| Sau3AI | GATC | 8 cut(s) | 186, 291, 372, 853, 1102, 1225, 1600, 2044 |
| Sau96I | GGNCC | 9 cut(s) | 234, 361, 362, 403, 595, 1978, 2140, 2477, 2522 |
| ScaI | AGTACT | 3 cut(s) | 427, 1150, 1314 |
| SchI | GAGTC | 6 cut(s) | 58, 284, 298, 444, 1397, 1403 |
| ScrFI | CCNGG | 1 cut(s) | 232 |
| SduI | GDGCHC | 2 cut(s) | 365, 2469 |
| SfaNI | GCATC | 7 cut(s) | 754, 1242, 1465, 1654, 1682, 2206, 2269 |
| SfcI | CTRYAG | 2 cut(s) | 747, 2563 |
| Sfr274I | CTCGAG | 1 cut(s) | 254 |
| SfuI | TTCGAA | 2 cut(s) | 421, 2161 |
| SinI | GGWCC | 6 cut(s) | 234, 403, 595, 1978, 2140, 2522 |
| SlaI | CTCGAG | 1 cut(s) | 254 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 537, 926, 932 |
| SmlI | CTYRAG | 4 cut(s) | 62, 254, 806, 1354 |
| SmoI | CTYRAG | 4 cut(s) | 62, 254, 806, 1354 |
| SpeI | ACTAGT | 1 cut(s) | 1145 |
| SseBI | AGGCCT | 1 cut(s) | 1645 |
| SsiI | CCGC | 5 cut(s) | 28, 207, 222, 246, 2526 |
| SspMI | CTAG | 3 cut(s) | 1025, 1146, 1682 |
| StuI | AGGCCT | 1 cut(s) | 1645 |
| StyD4I | CCNGG | 1 cut(s) | 230 |
| StyI | CCWWGG | 1 cut(s) | 1840 |
| TaaI | ACNGT | 8 cut(s) | 238, 379, 493, 641, 801, 895, 1966, 2537 |
| TaiI | ACGT | 3 cut(s) | 27, 1505, 2516 |
| TatI | WGTACW | 3 cut(s) | 425, 1148, 1312 |
| Tru1I | TTAA | 9 cut(s) | 63, 117, 381, 1131, 1743, 1760, 2237, 2408, 2495 |
| Tru9I | TTAA | 9 cut(s) | 63, 117, 381, 1131, 1743, 1760, 2237, 2408, 2495 |
| TscAI | CASTG | 5 cut(s) | 496, 646, 1063, 2125, 2433 |
| TseFI | GTSAC | 6 cut(s) | 1170, 2254, 2375, 2428, 2456, 2594 |
| TseI | GCWGC | 6 cut(s) | 121, 509, 1269, 1300, 2312, 2627 |
| Tsp45I | GTSAC | 6 cut(s) | 1170, 2254, 2375, 2428, 2456, 2594 |
| TspDTI | ATGAA | 8 cut(s) | 17, 492, 534, 561, 756, 1681, 1779, 1827 |
| TspRI | CASTG | 5 cut(s) | 496, 646, 1063, 2125, 2433 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 231, 2054 |
| Vha464I | CTTAAG | 1 cut(s) | 62 |
| VpaK11BI | GGWCC | 6 cut(s) | 234, 403, 595, 1978, 2140, 2522 |
| XapI | RAATTY | 8 cut(s) | 82, 565, 734, 901, 1559, 1897, 2301, 2354 |
| XceI | RCATGY | 6 cut(s) | 529, 1353, 1727, 2065, 2312, 2607 |
| XhoI | CTCGAG | 1 cut(s) | 254 |
| XmiI | GTMKAC | 1 cut(s) | 796 |
| XmnI | GAANNNNTTC | 1 cut(s) | 552 |
| XspI | CTAG | 3 cut(s) | 1025, 1146, 1682 |
| ZraI | GACGTC | 1 cut(s) | 2514 |
| ZrmI | AGTACT | 3 cut(s) | 427, 1150, 1314 |