FvH4_5g09400

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0006889
Physical Location & Seq
Reverse (-)
5430782 .. 5439840
9059 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g09400.t5

Sequence Viewer

Length: 1821 bp
ATGGGGAAAGATAGCCAGAACCAGAACCAGACGACGTTGGCTATGGAGATCGACAATCCGAAGGCCAACACCTCCGATCAGATCGGTCCTAAATTCTCCATCAACGTTTTACAGCTGTTGAAATCTGCTCAGATGCAACATGGATTGCGCCACGGGGATTACACTCGTTATCGGAGGTATTGCACTGCAAGGTTGAGGAGGCTGTACAAGTCATTGAAGTTCACTCACGGCCGCGGCAAGTACAACCGCCGAGCAATAACCGAATCAACTGTCACTGAAGTGAGGTTTCTCCATGTTGTTCTATATACGGCAGAGAGGGCTTGGAGCCATGCCATGGAAAAAAGGCAAGTTCTCGATGGTCCAAATGCTCGTCAACGAATCTATCTGATTGGTAGGCTGAGGAAGGCAGTAAAATGGGCTACTCTTTTTGCACAGTTGTCTGCAATCAAGGGAGATTCCAGAACTTCCTTAGAAGCAGAGGCTTATGCCTCCTTTATGAAAGGGAACCTGTTGTTTGAACAAGATCGAAATTGGGACACAGCATTACTGAACTTTAAAAGTGCCAGGGCGGTTTATGAGGAACTTGCAAAATATGGAGACCTGGAGAATCAAGTTTTATGCCGTGAGCGTGTTGAGGAATTAGAACCTAGTATCCGGTACTGTCTACACAAGGTTGGAGAGTCAAATCTACAAGGCTCTGAACTTCTACATATTGGTGAAATGGAAGGACCTGCTTTGGACCTATTTAAGGCTAAACTGGAGGCTGTCATGGATGAGGCAAGATCTCAACAGGCTGCCTCCATGACAGAATTTGATTGGCTAGGTCATAGATTTCCAATTTCTAATGCAAAAACTCGGGTTTCCATATTGAAAGCTCAAGATTTGGAGAAAGATATACTTGGTTCATCAGCTAATTCACTCCCTACTGAGAAAAGACTAGCCGTTTTTGACAAAATTTTCACTGCATACCATGAGGCAAGGAGCTGCATTCGCAGTGATTTGGTCAGTGCAAGTAGTTCTGAAAATGTAAAAGATGACTTGAGTGGCCTTGATAAAGCTGTTGGTGCTGTATTAGGACAACGGACCATTGAGCGGAACCAACTTTTGGTTAGCATTGCAAAGAGCAAACTGACCAAGCGACGAGATGACAAAAACGAGAGAGCTACTAAGCCAGAAGAGCTTGTCCGCTTATACGATCTCCTATTACAGAATACAGCTGATCTTTTAGATTTAGTCAGTTCGGGGCGACATAAAACACCAGAGGAAGATGCATTTATTGCAGAATTGGAGCTTAAAAGTTTGGCTTTCCGAGCCGAAAGGTGTTTCTTTTTAGGTAGATCATATAGTTTGGCTGGTAAGAGGGTGGAAGCATATGCATTGTTTTGCCGTGCTCGCAGTCTTGCCGAGGATGCCCTACAAAAATTCCAAGCTGTTGATAATGCCGATCAGGTGGTGACCAAAGAGTTGAAGCTATTGTGCGATGAATGCAGATCTAACAGTTGTATAGAGCATGCAACGGGAATCATGGAGGTGTTGAAGGCCCCTGAAAATCTCTCAAAACAAATTTCTAATGTTCATATATCTGGAGTTGACACGAAGGAGAAATTCCTCCTTGAGAAACTTGAGGTCTATGAATCTGCTGTTGGAGATTCAAATGTGAGAAGTGGTACGCGGATTGAAGCTTTTCCTCCTCCGTTCCAAACAATTCCTCGCAATCCGATTGTTCTAGACCTGGCCTATGATCATATCGAGTTCCCATCTCTTCTAAATAGGATGAAGAAAGAAACAAAGGGCTTCATTAGCAGGTTTTGGAGCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 map03060
Pfam Domains
Protein Families
SRP68

Protein Analysis

607

Amino Acids

68.8

Weight (kDa)

8.87

Isoelectric Point (pI)

42.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRP68 PF16969 49 - 444 1.3e-121 RNA-binding signal recognition particle 68
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 739, 1794
AccB7I CCANNNNNTGG 2 cut(s) 334, 1105
AccBSI CCGCTC 1 cut(s) 1093
AccI GTMKAC 1 cut(s) 664
AccII CGCG 2 cut(s) 234, 1672
AciI CCGC 7 cut(s) 232, 234, 247, 569, 1093, 1186, 1672
AclI AACGTT 1 cut(s) 105
AcoI YGGCCR 1 cut(s) 229
AcsI RAATTY 6 cut(s) 92, 809, 954, 1421, 1563, 1604
AcuI CTGAAG 1 cut(s) 297
AfaI GTAC 4 cut(s) 206, 242, 659, 1669
AfiI CCNNNNNNNGG 4 cut(s) 334, 748, 1092, 1105
AgsI TTSAA 8 cut(s) 121, 217, 518, 871, 1468, 1537, 1653, 1679
AjnI CCWGG 3 cut(s) 563, 600, 1731
AjuI GAANNNNNNNTTGG 4 cut(s) 1088, 1120, 1626, 1658
AleI CACNNNNGTG 1 cut(s) 278
AloI GAACNNNNNNTCC 2 cut(s) 636, 668
Alw21I GWGCWC 1 cut(s) 1393
Alw26I GTCTC 1 cut(s) 591
Ama87I CYCGRG 1 cut(s) 855
AoxI GGCC 5 cut(s) 63, 229, 1045, 1539, 1734
ApeKI GCWGC 2 cut(s) 794, 984
ApoI RAATTY 6 cut(s) 92, 809, 954, 1421, 1563, 1604
ArsI GACNNNNNNTTYG 2 cut(s) 255, 287
Asp700I GAANNNNTTC 1 cut(s) 1683
AspLEI GCGC 1 cut(s) 150
AspS9I GGNCC 6 cut(s) 86, 359, 728, 739, 1083, 1540
AsuHPI GGTGA 2 cut(s) 728, 1465
AvaI CYCGRG 1 cut(s) 855
AvaII GGWCC 5 cut(s) 86, 359, 728, 739, 1083
Bbv12I GWGCWC 1 cut(s) 1393
BbvCI CCTCAGC 1 cut(s) 398
BbvI GCAGC 2 cut(s) 781, 971
BccI CCATC 3 cut(s) 107, 350, 1765
BceAI ACGGC 5 cut(s) 244, 324, 606, 926, 1371
BciT130I CCWGG 3 cut(s) 565, 602, 1733
BciVI GTATCC 1 cut(s) 662
BclI TGATCA 1 cut(s) 1741
BcoDI GTCTC 1 cut(s) 591
BfaI CTAG 4 cut(s) 648, 821, 938, 1727
BfuAI ACCTGC 2 cut(s) 739, 1794
BfuI GTATCC 1 cut(s) 662
BglII AGATCT 2 cut(s) 782, 1490
BisI GCNGC 4 cut(s) 232, 235, 795, 985
BlsI GCNGC 4 cut(s) 233, 236, 796, 986
Bme1390I CCNGG 3 cut(s) 565, 602, 1733
Bme18I GGWCC 5 cut(s) 86, 359, 728, 739, 1083
BmeT110I CYCGRG 1 cut(s) 855
BmgT120I GGNCC 6 cut(s) 86, 359, 728, 739, 1083, 1540
BmiI GGNNCC 4 cut(s) 326, 506, 1097, 1542
BmrFI CCNGG 3 cut(s) 565, 602, 1733
BmsI GCATC 3 cut(s) 123, 1258, 1399
BpmI CTGGAG 3 cut(s) 623, 779, 1605
Bpu10I CCTNAGC 1 cut(s) 398
BpuEI CTTGAG 4 cut(s) 861, 1060, 1634, 1643
BsaI GGTCTC 1 cut(s) 591
BsaJI CCNNGG 5 cut(s) 151, 232, 333, 564, 1404
BsaWI WCCGGW 1 cut(s) 654
Bsc4I CCNNNNNNNGG 4 cut(s) 334, 748, 1092, 1105
Bse1I ACTGG 1 cut(s) 762
Bse3DI GCAATG 1 cut(s) 1113
BseBI CCWGG 3 cut(s) 565, 602, 1733
BseDI CCNNGG 5 cut(s) 151, 232, 333, 564, 1404
BseGI GGATG 3 cut(s) 778, 1414, 1779
BseLI CCNNNNNNNGG 4 cut(s) 334, 748, 1092, 1105
BseMI GCAATG 1 cut(s) 1113
BseMII CTCAG 3 cut(s) 143, 389, 918
BseNI ACTGG 1 cut(s) 762
BseRI GAGGAG 2 cut(s) 211, 1680
BseX3I CGGCCG 1 cut(s) 229
BseXI GCAGC 2 cut(s) 781, 971
Bsh1236I CGCG 2 cut(s) 234, 1672
Bsh1285I CGRYCG 1 cut(s) 232
BshFI GGCC 5 cut(s) 65, 231, 1047, 1541, 1736
BsiEI CGRYCG 1 cut(s) 232
BsiHKAI GWGCWC 1 cut(s) 1393
BsiHKCI CYCGRG 1 cut(s) 855
BsiSI CCGG 1 cut(s) 655
BslFI GGGAC 1 cut(s) 548
BslI CCNNNNNNNGG 4 cut(s) 334, 748, 1092, 1105
BsmAI GTCTC 1 cut(s) 591
BsmFI GGGAC 1 cut(s) 548
BsmI GAATGC 2 cut(s) 987, 1490
BsnI GGCC 5 cut(s) 65, 231, 1047, 1541, 1736
Bso31I GGTCTC 1 cut(s) 591
BsoBI CYCGRG 1 cut(s) 855
Bsp1286I GDGCHC 1 cut(s) 1393
Bsp1407I TGTACA 1 cut(s) 204
Bsp19I CCATGG 1 cut(s) 333
BspACI CCGC 7 cut(s) 232, 234, 247, 569, 1093, 1186, 1672
BspANI GGCC 5 cut(s) 65, 231, 1047, 1541, 1736
BspCNI CTCAG 3 cut(s) 142, 390, 919
BspFNI CGCG 2 cut(s) 234, 1672
BspLI GGNNCC 4 cut(s) 326, 506, 1097, 1542
BspMI ACCTGC 2 cut(s) 739, 1794
BspQI GCTCTTC 1 cut(s) 1170
BspTNI GGTCTC 1 cut(s) 591
BsrBI CCGCTC 1 cut(s) 1093
BsrDI GCAATG 1 cut(s) 1113
BsrGI TGTACA 1 cut(s) 204
BsrI ACTGG 1 cut(s) 762
BssECI CCNNGG 5 cut(s) 151, 232, 333, 564, 1404
BssT1I CCWWGG 1 cut(s) 333
Bst2UI CCWGG 3 cut(s) 565, 602, 1733
Bst4CI ACNGT 4 cut(s) 271, 435, 662, 1499
Bst6I CTCTTC 2 cut(s) 1170, 1767
BstAPI GCANNNNNTGC 1 cut(s) 1277
BstAUI TGTACA 1 cut(s) 204
BstC8I GCNNGC 2 cut(s) 1393, 1512
BstDEI CTNAG 5 cut(s) 129, 398, 469, 927, 1167
BstDSI CCRYGG 3 cut(s) 151, 232, 333
BstEII GGTNACC 1 cut(s) 1453
BstENI CCTNNNNNAGG 1 cut(s) 746
BstF5I GGATG 3 cut(s) 778, 1414, 1779
BstFNI CGCG 2 cut(s) 234, 1672
BstHHI GCGC 1 cut(s) 150
BstMAI GTCTC 1 cut(s) 591
BstMCI CGRYCG 1 cut(s) 232
BstNI CCWGG 3 cut(s) 565, 602, 1733
BstNSI RCATGY 2 cut(s) 1514, 1819
BstPI GGTNACC 1 cut(s) 1453
BstSCI CCNGG 3 cut(s) 563, 600, 1731
BstUI CGCG 2 cut(s) 234, 1672
BstV1I GCAGC 2 cut(s) 781, 971
BstX2I RGATCY 2 cut(s) 782, 1490
BstYI RGATCY 2 cut(s) 782, 1490
BstZI CGGCCG 1 cut(s) 229
BsuI GTATCC 1 cut(s) 662
BsuRI GGCC 5 cut(s) 65, 231, 1047, 1541, 1736
BtgI CCRYGG 3 cut(s) 151, 232, 333
BtgZI GCGATG 1 cut(s) 1494
BtsCI GGATG 3 cut(s) 778, 1414, 1779
BtsI GCAGTG 3 cut(s) 183, 960, 1000
BtsIMutI CAGTG 5 cut(s) 183, 273, 960, 1000, 1012
BveI ACCTGC 2 cut(s) 739, 1794
Cac8I GCNNGC 2 cut(s) 1393, 1512
CfoI GCGC 1 cut(s) 150
Cfr13I GGNCC 6 cut(s) 86, 359, 728, 739, 1083, 1540
Cfr42I CCGCGG 1 cut(s) 235
Csp6I GTAC 4 cut(s) 205, 241, 658, 1668
CviQI GTAC 4 cut(s) 205, 241, 658, 1668
DdeI CTNAG 5 cut(s) 129, 398, 469, 927, 1167
DraI TTTAAA 1 cut(s) 556
EaeI YGGCCR 1 cut(s) 229
EagI CGGCCG 1 cut(s) 229
Eam1104I CTCTTC 2 cut(s) 1170, 1767
EarI CTCTTC 2 cut(s) 1170, 1767
EclXI CGGCCG 1 cut(s) 229
Eco130I CCWWGG 1 cut(s) 333
Eco31I GGTCTC 1 cut(s) 591
Eco47I GGWCC 5 cut(s) 86, 359, 728, 739, 1083
Eco52I CGGCCG 1 cut(s) 229
Eco57I CTGAAG 1 cut(s) 297
Eco88I CYCGRG 1 cut(s) 855
Eco91I GGTNACC 1 cut(s) 1453
EcoNI CCTNNNNNAGG 1 cut(s) 746
EcoO109I RGGNCCY 2 cut(s) 728, 1540
EcoO65I GGTNACC 1 cut(s) 1453
EcoRII CCWGG 3 cut(s) 563, 600, 1731
EcoT14I CCWWGG 1 cut(s) 333
EcoT22I ATGCAT 2 cut(s) 1273, 1378
ErhI CCWWGG 1 cut(s) 333
FalI AAGNNNNNCTT 4 cut(s) 882, 914, 1288, 1320
FaqI GGGAC 1 cut(s) 548
FauNDI CATATG 1 cut(s) 1372
FbaI TGATCA 1 cut(s) 1741
FblI GTMKAC 1 cut(s) 664
Fnu4HI GCNGC 4 cut(s) 232, 235, 795, 985
FokI GGATG 3 cut(s) 785, 1421, 1786
Fsp4HI GCNGC 4 cut(s) 232, 235, 795, 985
FspBI CTAG 4 cut(s) 648, 821, 938, 1727
GlaI GCGC 1 cut(s) 149
GluI GCNGC 4 cut(s) 232, 235, 795, 985
GsuI CTGGAG 3 cut(s) 623, 779, 1605
HaeIII GGCC 5 cut(s) 65, 231, 1047, 1541, 1736
HapII CCGG 1 cut(s) 655
HhaI GCGC 1 cut(s) 150
Hin6I GCGC 1 cut(s) 148
HinP1I GCGC 1 cut(s) 148
HincII GTYRAC 2 cut(s) 374, 1591
HindII GTYRAC 2 cut(s) 374, 1591
HindIII AAGCTT 1 cut(s) 1680
HinfI GANTC 8 cut(s) 263, 378, 455, 607, 680, 1521, 1634, 1649
HpaII CCGG 1 cut(s) 655
HphI GGTGA 2 cut(s) 728, 1465
Hpy166II GTNNAC 4 cut(s) 222, 374, 665, 1591
Hpy188III TCNNGA 5 cut(s) 353, 459, 878, 1584, 1727
Hpy8I GTNNAC 4 cut(s) 222, 374, 665, 1591
Hpy99I CGWCG 2 cut(s) 37, 1143
HpyAV CCTTC 5 cut(s) 55, 397, 719, 1531, 1591
HpyCH4III ACNGT 4 cut(s) 271, 435, 662, 1499
HpyCH4IV ACGT 2 cut(s) 35, 105
HpyF3I CTNAG 5 cut(s) 129, 398, 469, 927, 1167
HpySE526I ACGT 2 cut(s) 35, 105
HspAI GCGC 1 cut(s) 148
Ksp22I TGATCA 1 cut(s) 1741
KspI CCGCGG 1 cut(s) 235
LguI GCTCTTC 1 cut(s) 1170
LmnI GCTCC 4 cut(s) 324, 981, 1288, 1812
Lsp1109I GCAGC 2 cut(s) 781, 971
LweI GCATC 3 cut(s) 123, 1258, 1399
MaeI CTAG 4 cut(s) 648, 821, 938, 1727
MaeII ACGT 2 cut(s) 35, 105
MaeIII GTNAC 2 cut(s) 271, 1453
MbiI CCGCTC 1 cut(s) 1093
MboII GAAGA 4 cut(s) 1187, 1277, 1754, 1789
MflI RGATCY 2 cut(s) 782, 1490
MhlI GDGCHC 1 cut(s) 1393
MlyI GAGTC 1 cut(s) 689
MmeI TCCRAC 2 cut(s) 655, 1624
Mph1103I ATGCAT 2 cut(s) 1273, 1378
MroXI GAANNNNTTC 1 cut(s) 1683
MseI TTAA 3 cut(s) 555, 747, 1293
MslI CAYNNNNRTG 3 cut(s) 278, 714, 1529
MspA1I CMGCKG 3 cut(s) 115, 234, 1217
MspI CCGG 1 cut(s) 655
MspR9I CCNGG 3 cut(s) 565, 602, 1733
Mva1269I GAATGC 2 cut(s) 987, 1490
MvaI CCWGG 3 cut(s) 565, 602, 1733
MvnI CGCG 2 cut(s) 234, 1672
NcoI CCATGG 1 cut(s) 333
NdeI CATATG 1 cut(s) 1372
NlaIV GGNNCC 4 cut(s) 326, 506, 1097, 1542
NmeAIII GCCGAG 2 cut(s) 275, 1429
NmuCI GTSAC 2 cut(s) 271, 1453
NsiI ATGCAT 2 cut(s) 1273, 1378
NspI RCATGY 2 cut(s) 1514, 1819
OliI CACNNNNGTG 1 cut(s) 278
PaeI GCATGC 1 cut(s) 1514
PciSI GCTCTTC 1 cut(s) 1170
PctI GAATGC 2 cut(s) 987, 1490
PdmI GAANNNNTTC 1 cut(s) 1683
PfeI GAWTC 7 cut(s) 263, 378, 455, 607, 1521, 1634, 1649
PflMI CCANNNNNTGG 2 cut(s) 334, 1105
PkrI GCNGC 4 cut(s) 233, 236, 796, 986
PleI GAGTC 1 cut(s) 688
PpsI GAGTC 1 cut(s) 688
PpuMI RGGWCCY 1 cut(s) 728
Psp1406I AACGTT 1 cut(s) 105
Psp5II RGGWCCY 1 cut(s) 728
Psp6I CCWGG 3 cut(s) 563, 600, 1731
PspEI GGTNACC 1 cut(s) 1453
PspGI CCWGG 3 cut(s) 563, 600, 1731
PspN4I GGNNCC 4 cut(s) 326, 506, 1097, 1542
PspPI GGNCC 6 cut(s) 86, 359, 728, 739, 1083, 1540
PspPPI RGGWCCY 1 cut(s) 728
PsuI RGATCY 2 cut(s) 782, 1490
PvuII CAGCTG 2 cut(s) 115, 1217
RsaI GTAC 4 cut(s) 206, 242, 659, 1669
RsaNI GTAC 4 cut(s) 205, 241, 658, 1668
RseI CAYNNNNRTG 3 cut(s) 278, 714, 1529
SacII CCGCGG 1 cut(s) 235
SapI GCTCTTC 1 cut(s) 1170
SaqAI TTAA 3 cut(s) 555, 747, 1293
SatI GCNGC 4 cut(s) 232, 235, 795, 985
Sau96I GGNCC 6 cut(s) 86, 359, 728, 739, 1083, 1540
SchI GAGTC 1 cut(s) 689
ScrFI CCNGG 3 cut(s) 565, 602, 1733
SduI GDGCHC 1 cut(s) 1393
SfaNI GCATC 3 cut(s) 123, 1258, 1399
Sfr303I CCGCGG 1 cut(s) 235
SgrBI CCGCGG 1 cut(s) 235
SinI GGWCC 5 cut(s) 86, 359, 728, 739, 1083
SmiMI CAYNNNNRTG 3 cut(s) 278, 714, 1529
SmlI CTYRAG 4 cut(s) 876, 1039, 1613, 1622
SmoI CTYRAG 4 cut(s) 876, 1039, 1613, 1622
SphI GCATGC 1 cut(s) 1514
SsiI CCGC 7 cut(s) 232, 234, 247, 569, 1093, 1186, 1672
SspMI CTAG 4 cut(s) 648, 821, 938, 1727
StyD4I CCNGG 3 cut(s) 563, 600, 1731
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 4 cut(s) 271, 435, 662, 1499
TaiI ACGT 2 cut(s) 38, 108
TaqI TCGA 4 cut(s) 51, 354, 526, 1749
TaqII GACCGA 1 cut(s) 74
TatI WGTACW 2 cut(s) 204, 240
TauI GCSGC 2 cut(s) 234, 237
TfiI GAWTC 7 cut(s) 263, 378, 455, 607, 1521, 1634, 1649
Tru1I TTAA 3 cut(s) 555, 747, 1293
Tru9I TTAA 3 cut(s) 555, 747, 1293
TscAI CASTG 5 cut(s) 190, 280, 967, 1000, 1012
TseFI GTSAC 2 cut(s) 271, 1453
TseI GCWGC 2 cut(s) 794, 984
Tsp45I GTSAC 2 cut(s) 271, 1453
TspDTI ATGAA 7 cut(s) 512, 894, 1497, 1565, 1647, 1786, 1790
TspGWI ACGGA 2 cut(s) 1096, 1683
TspRI CASTG 5 cut(s) 190, 280, 967, 1000, 1012
Van91I CCANNNNNTGG 2 cut(s) 334, 1105
VpaK11BI GGWCC 5 cut(s) 86, 359, 728, 739, 1083
XagI CCTNNNNNAGG 1 cut(s) 746
XapI RAATTY 6 cut(s) 92, 809, 954, 1421, 1563, 1604
XbaI TCTAGA 1 cut(s) 1726
XceI RCATGY 2 cut(s) 1514, 1819
XmiI GTMKAC 1 cut(s) 664
XmnI GAANNNNTTC 1 cut(s) 1683
XspI CTAG 4 cut(s) 648, 821, 938, 1727
Zsp2I ATGCAT 2 cut(s) 1273, 1378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.