Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006889

Physical Location & Seq

Genomic Coordinates Reverse (-)

61099086 .. 61100082

Gene Structure 997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0493900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGACAAATTTTGCATCACCTGAAGCTTTAAAACAACGGATTATTATCTCAACCGAGCCACCAAAAGTTGGTTTGGAAGAGGCTCTAGAGGTTGGTGAAAAAGTTCACACAGAGGAACATTCTAAGGATTTACCCCAAGGAAACATGTTGGATGGATGCATGGAGCTCAAATGGTTGTGTCTAATATGCAGCAGCTCAACTGAAATTTCAGAGGAGCTATCATCTATTGCAAATACGGATCTGACTTTCGTCACTACAAGCCTAAACCATTTGTTGTCAAGGCTGACCATGTTTGCTATATGTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRP68

Protein Analysis

102

Amino Acids

11.27

Weight (kDa)

4.67

Isoelectric Point (pI)

50.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61970
fragaria_vesca	FvH4_5g09400 FvH4_5g09400 FvH4_5g09400 FvH4_5g09400 FvH4_5g09400
malus_domestica	MD06G1131700.v1.1 MD06G1146600.v1.1 MD14G1148000.v1.1
prunus_persica	Prupe.5G142700_v2.0.a1 Prupe.5G142700_v2.0.a1 Prupe.5G142700_v2.0.a1 Prupe.5G142700_v2.0.a1
pyrus_communis	pycom06g12330
rosa_chinensis	RchiOBHm_Chr7g0188791
rosa_laevigata	RLG00000004660
rosa_multiflora	Rmu_sc0003642.1_g000006
rosa_roxburghii	Rroxscaffold_3G00266030
rosa_rugosa	Rorug06G0493900 Rorug06G0494000 Rorug06G0494100
rosa_samantha	Rh7AG098500 Rh7BG100300 Rh7CG101800 Rh7DG100300
rosa_wichuraiana	Rw7G008500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	68
AclWI	GGATC	1 cut(s)	246
AcsI	RAATTY	2 cut(s)	7, 204
AcuI	CTGAAG	1 cut(s)	42
AfaI	GTAC	1 cut(s)	304
AfiI	CCNNNNNNNGG	1 cut(s)	68
AflIII	ACRYGT	1 cut(s)	144
AluBI	AGCT	4 cut(s)	26, 166, 195, 217
AluI	AGCT	4 cut(s)	26, 166, 195, 217
Alw21I	GWGCWC	1 cut(s)	168
AlwI	GGATC	1 cut(s)	246
ApeKI	GCWGC	2 cut(s)	189, 192
ApoI	RAATTY	2 cut(s)	7, 204
Asp700I	GAANNNNTTC	1 cut(s)	102
AsuHPI	GGTGA	2 cut(s)	9, 107
BanII	GRGCYC	1 cut(s)	168
Bbv12I	GWGCWC	1 cut(s)	168
BbvI	GCAGC	2 cut(s)	201, 204
BccI	CCATC	1 cut(s)	146
BfaI	CTAG	1 cut(s)	86
BisI	GCNGC	2 cut(s)	190, 193
BlsI	GCNGC	2 cut(s)	191, 194
BmsI	GCATC	2 cut(s)	23, 146
BoxI	GACNNNNGTC	1 cut(s)	248
BsaBI	GATNNNNATC	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
Bse8I	GATNNNNATC	1 cut(s)	44
BseDI	CCNNGG	1 cut(s)	136
BseGI	GGATG	2 cut(s)	157, 161
BseJI	GATNNNNATC	1 cut(s)	44
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseRI	GAGGAG	1 cut(s)	227
BseXI	GCAGC	2 cut(s)	201, 204
BsiHKAI	GWGCWC	1 cut(s)	168
BslI	CCNNNNNNNGG	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp1407I	TGTACA	1 cut(s)	302
Bsp143I	GATC	1 cut(s)	238
BspPI	GGATC	1 cut(s)	246
BsrGI	TGTACA	1 cut(s)	302
BssECI	CCNNGG	1 cut(s)	136
BssMI	GATC	1 cut(s)	238
BssT1I	CCWWGG	1 cut(s)	136
Bst6I	CTCTTC	1 cut(s)	72
BstAUI	TGTACA	1 cut(s)	302
BstDEI	CTNAG	1 cut(s)	123
BstF5I	GGATG	2 cut(s)	157, 161
BstKTI	GATC	1 cut(s)	241
BstMBI	GATC	1 cut(s)	238
BstNSI	RCATGY	1 cut(s)	148
BstPAI	GACNNNNGTC	1 cut(s)	248
BstV1I	GCAGC	2 cut(s)	201, 204
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
BtsCI	GGATG	2 cut(s)	157, 161
Csp6I	GTAC	1 cut(s)	303
CviAII	CATG	3 cut(s)	145, 160, 289
CviJI	RGCY	8 cut(s)	26, 58, 83, 166, 195, 217, 261, 283
CviKI_1	RGCY	8 cut(s)	26, 58, 83, 166, 195, 217, 261, 283
CviQI	GTAC	1 cut(s)	303
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	1 cut(s)	240
DpnII	GATC	1 cut(s)	238
DraI	TTTAAA	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	72
EarI	CTCTTC	1 cut(s)	72
Ecl136II	GAGCTC	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	136
Eco24I	GRGCYC	1 cut(s)	168
Eco53kI	GAGCTC	1 cut(s)	166
Eco57I	CTGAAG	1 cut(s)	42
EcoICRI	GAGCTC	1 cut(s)	166
EcoT14I	CCWWGG	1 cut(s)	136
EcoT22I	ATGCAT	1 cut(s)	161
EcoT38I	GRGCYC	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	136
FaeI	CATG	3 cut(s)	148, 163, 292
FaiI	YATR	7 cut(s)	146, 161, 187, 290, 299, 301, 307
FatI	CATG	3 cut(s)	144, 159, 288
Fnu4HI	GCNGC	2 cut(s)	190, 193
FokI	GGATG	2 cut(s)	164, 168
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	2 cut(s)	190, 193
FspBI	CTAG	1 cut(s)	86
GluI	GCNGC	2 cut(s)	190, 193
Hin1II	CATG	3 cut(s)	148, 163, 292
HindIII	AAGCTT	1 cut(s)	24
HphI	GGTGA	2 cut(s)	9, 107
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	2 cut(s)	211, 243
Hpy188III	TCNNGA	1 cut(s)	86
Hpy8I	GTNNAC	1 cut(s)	106
HpyCH4V	TGCA	4 cut(s)	14, 159, 189, 230
HpyF3I	CTNAG	1 cut(s)	123
Hsp92II	CATG	3 cut(s)	148, 163, 292
Kzo9I	GATC	1 cut(s)	238
LmnI	GCTCC	2 cut(s)	163, 214
LpnPI	CCDG	1 cut(s)	33
Lsp1109I	GCAGC	2 cut(s)	201, 204
LweI	GCATC	2 cut(s)	23, 146
MaeI	CTAG	1 cut(s)	86
MaeIII	GTNAC	1 cut(s)	250
MalI	GATC	1 cut(s)	240
MboI	GATC	1 cut(s)	238
MboII	GAAGA	1 cut(s)	89
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	1 cut(s)	168
MluCI	AATT	2 cut(s)	7, 204
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	4 cut(s)	73, 82, 106, 205
Mph1103I	ATGCAT	1 cut(s)	161
MroXI	GAANNNNTTC	1 cut(s)	102
MseI	TTAA	1 cut(s)	29
NdeII	GATC	1 cut(s)	238
NlaIII	CATG	3 cut(s)	148, 163, 292
NmuCI	GTSAC	1 cut(s)	250
NsiI	ATGCAT	1 cut(s)	161
NspI	RCATGY	1 cut(s)	148
PciI	ACATGT	1 cut(s)	144
PdmI	GAANNNNTTC	1 cut(s)	102
PflMI	CCANNNNNTGG	1 cut(s)	68
PkrI	GCNGC	2 cut(s)	191, 194
PscI	ACATGT	1 cut(s)	144
PshAI	GACNNNNGTC	1 cut(s)	248
Psp124BI	GAGCTC	1 cut(s)	168
PsuI	RGATCY	1 cut(s)	238
RsaI	GTAC	1 cut(s)	304
RsaNI	GTAC	1 cut(s)	303
SacI	GAGCTC	1 cut(s)	168
SaqAI	TTAA	1 cut(s)	29
SatI	GCNGC	2 cut(s)	190, 193
Sau3AI	GATC	1 cut(s)	238
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	6 cut(s)	22, 28, 93, 168, 197, 219
SfaNI	GCATC	2 cut(s)	23, 146
SgeI	CNNG	9 cut(s)	32, 67, 98, 149, 157, 172, 270, 291, 301
Sse9I	AATT	2 cut(s)	7, 204
SspMI	CTAG	1 cut(s)	86
SstI	GAGCTC	1 cut(s)	168
StyI	CCWWGG	1 cut(s)	136
TasI	AATT	2 cut(s)	7, 204
TatI	WGTACW	1 cut(s)	302
Tru1I	TTAA	1 cut(s)	29
Tru9I	TTAA	1 cut(s)	29
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	2 cut(s)	189, 192
Tsp45I	GTSAC	1 cut(s)	250
TspGWI	ACGGA	2 cut(s)	52, 251
Van91I	CCANNNNNTGG	1 cut(s)	68
XapI	RAATTY	2 cut(s)	7, 204
XbaI	TCTAGA	1 cut(s)	85
XceI	RCATGY	1 cut(s)	148
XmnI	GAANNNNTTC	1 cut(s)	102
XspI	CTAG	1 cut(s)	86
Zsp2I	ATGCAT	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.