Rh7AG098500

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Forward (+)
7500903 .. 7506477
5575 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG098500.1

Sequence Viewer

Length: 1710 bp
ATGGGGAAAGAGAACCAGAACCAGACGACGTCGGCTATGGAGATCGACAATCAAAAGGCGAACACCTCCGATCAGATCGGTCCTAAATTCTCAATCAACGTTTTACAGCTGTTGAAATCTGCTCAGATGCAGCATGGATTGCGCCATGGGGATTACACTCGTTATCGGAGGTATTGCACTGCAAGGTTGAGGAGGCTGTATAAGTCATTGAAGTTCACACACGGCCGTGGCAAGTACAACCGCCGAGCAATAACCGAATCAACTGTTACTGAAGTGAGGTTTCTCCATGTGGTTCTATATACGGCAGAGAGGGCTTGGAGCCATGCCATGGAAAAAAGGCAAGTTCTGGATGGTCCAAATGCTCGTCAACGAATCTATCTGATTGGTAGGCTGAGGAAGGCAGTAAAATGGGCTACTCTTTTTGCACAGTTGTCTGCAATCAAGGGAGATTCTAGAACTTCCTTAGAAGCTGAGGCTTATGCCTCTTTTATGAAAGGGAACCTGTTGTTTGAACAAGATCGAAATTGGGACACAGCATTACTGAACTTCAAAAGTGCCAGGGCGGTTTATGAGGAGCTTGCGAAATATGGAGACCTGGAGAATCAAGTTTTATGCCGTGAGCGTGTTGAGGAATTAGAACCTAGTATCCGGTACTGTCTACACAAGATTGGAGAGTCAAATCTACAAGGCTCTGAACTTCTACATATTGGCGAGATGGAAGGACCTGCTTTGGACCTCTTCAAGGCTAAATTGGAGGCTGTTATGGATGAGGCAAGATCTCAACAGGCTGCCTCCATGACAGAATTTCATTGGCTAGGCCATAGATTTCCAATTTCGAATGCAAAAACTCGGGTTTCTATTTTAAAAGCTCAAGACTTGGAGAAAGATGTACTTGGTTCATCAGCTAATTCACTCCCTACAGAGAAAAGGCTAGCCATTTTTGACAAAATTTTCACTGCATACCATGAGGCAAGGAGCTGCATTCGCAGTGATTTGGTCAGTGCAGGTAGTTCTGAAAATGTTAAAGATGACTTGAATGGCCTCGATAAAGCTGTTAGTGCTGTATTAGGACAACGGACCATTGAGCGTAACCTACTTTTGGTTAGCATTGCAAAGAGCAAACTCACTAAGCGACGAGATGACAAAAATGAGAGAACTACGAAGCCAGAAGAGCTTGTCCGCTTGTATGATCTCCTATTACAGAATACAGCTGACCTTTCAGATTTAGTCAGTTCGGGACGAGAAAAAACATCAGAGGAAGTCACATTTGCTGCAGAATGTGAGCTTAAAAGTTTGGCTTTCCGAGCAGAAAGGTGTTTCTTTTTGGGTAGATCATACAGTTTGGCTGGTAAGAGGGTGGAAGCATATTCATTGTATTGCCGTGCTCGCACACTTGCTGAGGATGCCCTGCAAAAATTTAAAGCTGTTGATAATGCTGATCAGGTGGTGATCAAAGAGTTGAAGCTATTGTGCGATGAATGCAGATCTAACAGTTGTATAGAGCATGCAACAGGAATCATGGAGGAGCTGAAGGCTCCTGAAAATCTCTCACAACAGATTTCTAACATCCATATATCTGGAGTTGACACGAAGGTATGCATTATGCTTTTCCTCTTCATCAGGAAATATTTGAATGATGTCATGAACCTCCATAGTTTAGTAGCACTGGCCAAGGAGATTTTGTGTCCTGGTAATCATTCTTCAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

569

Amino Acids

64.52

Weight (kDa)

8.87

Isoelectric Point (pI)

38.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRP68 PF16969 47 - 521 4e-142 RNA-binding signal recognition particle 68
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 32
Acc36I ACCTGC 2 cut(s) 733, 995
AccB7I CCANNNNNTGG 1 cut(s) 328
AccI GTMKAC 1 cut(s) 658
AciI CCGC 3 cut(s) 241, 563, 1180
AclI AACGTT 1 cut(s) 99
AcoI YGGCCR 2 cut(s) 223, 1668
AcsI RAATTY 4 cut(s) 86, 803, 948, 1415
AcuI CTGAAG 2 cut(s) 291, 1550
AcyI GRCGYC 1 cut(s) 29
AfaI GTAC 3 cut(s) 236, 653, 891
AfiI CCNNNNNNNGG 3 cut(s) 328, 742, 1099
AgsI TTSAA 9 cut(s) 115, 211, 512, 550, 742, 1036, 1462, 1633, 1704
AjnI CCWGG 3 cut(s) 557, 594, 1687
AleI CACNNNNGTG 1 cut(s) 225
AloI GAACNNNNNNTCC 2 cut(s) 630, 662
Alw21I GWGCWC 1 cut(s) 1387
Alw26I GTCTC 1 cut(s) 585
Ama87I CYCGRG 1 cut(s) 849
AoxI GGCC 4 cut(s) 223, 817, 1039, 1668
ApeKI GCWGC 4 cut(s) 130, 788, 978, 1271
ApoI RAATTY 4 cut(s) 86, 803, 948, 1415
AspLEI GCGC 1 cut(s) 144
AspS9I GGNCC 5 cut(s) 80, 353, 722, 733, 1077
AsuHPI GGTGA 1 cut(s) 1459
AsuII TTCGAA 1 cut(s) 836
AsuNHI GCTAGC 1 cut(s) 931
AvaI CYCGRG 1 cut(s) 849
AvaII GGWCC 5 cut(s) 80, 353, 722, 733, 1077
BalI TGGCCA 1 cut(s) 1670
BarI GAAGNNNNNNTAC 1 cut(s) 1684
Bbv12I GWGCWC 1 cut(s) 1387
BbvCI CCTCAGC 3 cut(s) 392, 471, 1398
BbvI GCAGC 4 cut(s) 142, 775, 965, 1258
BccI CCATC 2 cut(s) 344, 709
BceAI ACGGC 5 cut(s) 210, 238, 318, 600, 1365
BciT130I CCWGG 3 cut(s) 559, 596, 1689
BciVI GTATCC 1 cut(s) 656
BclI TGATCA 2 cut(s) 1438, 1449
BcoDI GTCTC 1 cut(s) 585
BfaI CTAG 4 cut(s) 453, 642, 815, 932
BfmI CTRYAG 2 cut(s) 918, 1272
BfuAI ACCTGC 2 cut(s) 733, 995
BfuI GTATCC 1 cut(s) 656
BglII AGATCT 2 cut(s) 776, 1484
BisI GCNGC 4 cut(s) 131, 789, 979, 1272
BlsI GCNGC 4 cut(s) 132, 790, 980, 1273
Bme1390I CCNGG 3 cut(s) 559, 596, 1689
Bme18I GGWCC 5 cut(s) 80, 353, 722, 733, 1077
BmeT110I CYCGRG 1 cut(s) 849
BmgT120I GGNCC 5 cut(s) 80, 353, 722, 733, 1077
BmiI GGNNCC 3 cut(s) 320, 500, 1536
BmrFI CCNGG 3 cut(s) 559, 596, 1689
BmsI GCATC 2 cut(s) 117, 1393
BmtI GCTAGC 1 cut(s) 935
BpmI CTGGAG 2 cut(s) 617, 1599
Bpu10I CCTNAGC 3 cut(s) 392, 471, 1398
Bpu14I TTCGAA 1 cut(s) 836
BpuEI CTTGAG 1 cut(s) 855
BsaHI GRCGYC 1 cut(s) 29
BsaI GGTCTC 1 cut(s) 585
BsaJI CCNNGG 5 cut(s) 145, 226, 327, 558, 1671
BsaWI WCCGGW 1 cut(s) 648
BsaXI ACNNNNNCTCC 2 cut(s) 1667, 1697
Bsc4I CCNNNNNNNGG 3 cut(s) 328, 742, 1099
Bse1I ACTGG 1 cut(s) 1671
Bse3DI GCAATG 1 cut(s) 1107
BseBI CCWGG 3 cut(s) 559, 596, 1689
BseDI CCNNGG 5 cut(s) 145, 226, 327, 558, 1671
BseGI GGATG 4 cut(s) 355, 772, 1408, 1566
BseLI CCNNNNNNNGG 3 cut(s) 328, 742, 1099
BseMI GCAATG 1 cut(s) 1107
BseMII CTCAG 4 cut(s) 137, 383, 462, 1389
BseNI ACTGG 1 cut(s) 1671
BseRI GAGGAG 3 cut(s) 205, 587, 1538
BseX3I CGGCCG 1 cut(s) 223
BseXI GCAGC 4 cut(s) 142, 775, 965, 1258
BsgI GTGCAG 1 cut(s) 1023
Bsh1285I CGRYCG 1 cut(s) 226
BshFI GGCC 4 cut(s) 225, 819, 1041, 1670
BsiEI CGRYCG 1 cut(s) 226
BsiHKAI GWGCWC 1 cut(s) 1387
BsiHKCI CYCGRG 1 cut(s) 849
BsiSI CCGG 1 cut(s) 649
BslFI GGGAC 2 cut(s) 542, 1251
BslI CCNNNNNNNGG 3 cut(s) 328, 742, 1099
BsmAI GTCTC 1 cut(s) 585
BsmFI GGGAC 2 cut(s) 542, 1251
BsmI GAATGC 3 cut(s) 844, 981, 1484
BsnI GGCC 4 cut(s) 225, 819, 1041, 1670
Bso31I GGTCTC 1 cut(s) 585
BsoBI CYCGRG 1 cut(s) 849
Bsp119I TTCGAA 1 cut(s) 836
Bsp1286I GDGCHC 1 cut(s) 1387
Bsp19I CCATGG 2 cut(s) 145, 327
BspACI CCGC 3 cut(s) 241, 563, 1180
BspANI GGCC 4 cut(s) 225, 819, 1041, 1670
BspCNI CTCAG 4 cut(s) 136, 384, 463, 1390
BspHI TCATGA 1 cut(s) 1641
BspLI GGNNCC 3 cut(s) 320, 500, 1536
BspMAI CTGCAG 1 cut(s) 1276
BspMI ACCTGC 2 cut(s) 733, 995
BspOI GCTAGC 1 cut(s) 935
BspQI GCTCTTC 1 cut(s) 1164
BspT104I TTCGAA 1 cut(s) 836
BspTNI GGTCTC 1 cut(s) 585
BsrDI GCAATG 1 cut(s) 1107
BsrI ACTGG 1 cut(s) 1671
BssECI CCNNGG 5 cut(s) 145, 226, 327, 558, 1671
BssNI GRCGYC 1 cut(s) 29
BssT1I CCWWGG 3 cut(s) 145, 327, 1671
Bst2UI CCWGG 3 cut(s) 559, 596, 1689
Bst4CI ACNGT 5 cut(s) 265, 429, 656, 1340, 1493
Bst6I CTCTTC 3 cut(s) 743, 1164, 1619
BstACI GRCGYC 1 cut(s) 29
BstAPI GCANNNNNTGC 1 cut(s) 139
BstBI TTCGAA 1 cut(s) 836
BstC8I GCNNGC 4 cut(s) 579, 933, 1387, 1506
BstDEI CTNAG 6 cut(s) 123, 392, 463, 471, 1128, 1398
BstDSI CCRYGG 3 cut(s) 145, 226, 327
BstENI CCTNNNNNAGG 1 cut(s) 740
BstF5I GGATG 4 cut(s) 355, 772, 1408, 1566
BstHHI GCGC 1 cut(s) 144
BstMAI GTCTC 1 cut(s) 585
BstMCI CGRYCG 1 cut(s) 226
BstMWI GCNNNNNNNGC 9 cut(s) 139, 311, 984, 1058, 1171, 1304, 1386, 1403, 1479
BstNI CCWGG 3 cut(s) 559, 596, 1689
BstNSI RCATGY 1 cut(s) 1508
BstSCI CCNGG 3 cut(s) 557, 594, 1687
BstSFI CTRYAG 2 cut(s) 918, 1272
BstV1I GCAGC 4 cut(s) 142, 775, 965, 1258
BstX2I RGATCY 2 cut(s) 776, 1484
BstXI CCANNNNNNTGG 1 cut(s) 1577
BstYI RGATCY 2 cut(s) 776, 1484
BstZI CGGCCG 1 cut(s) 223
BsuI GTATCC 1 cut(s) 656
BsuRI GGCC 4 cut(s) 225, 819, 1041, 1670
BtgI CCRYGG 3 cut(s) 145, 226, 327
BtgZI GCGATG 1 cut(s) 1488
BtsCI GGATG 4 cut(s) 355, 772, 1408, 1566
BtsI GCAGTG 3 cut(s) 177, 954, 994
BtsIMutI CAGTG 5 cut(s) 177, 954, 994, 1006, 1664
BveI ACCTGC 2 cut(s) 733, 995
Cac8I GCNNGC 4 cut(s) 579, 933, 1387, 1506
CciI TCATGA 1 cut(s) 1641
CfoI GCGC 1 cut(s) 144
Cfr13I GGNCC 5 cut(s) 80, 353, 722, 733, 1077
Csp6I GTAC 3 cut(s) 235, 652, 890
CviQI GTAC 3 cut(s) 235, 652, 890
DdeI CTNAG 6 cut(s) 123, 392, 463, 471, 1128, 1398
DraI TTTAAA 2 cut(s) 864, 1420
EaeI YGGCCR 2 cut(s) 223, 1668
EagI CGGCCG 1 cut(s) 223
Eam1104I CTCTTC 3 cut(s) 743, 1164, 1619
EarI CTCTTC 3 cut(s) 743, 1164, 1619
EclXI CGGCCG 1 cut(s) 223
Eco130I CCWWGG 3 cut(s) 145, 327, 1671
Eco31I GGTCTC 1 cut(s) 585
Eco47I GGWCC 5 cut(s) 80, 353, 722, 733, 1077
Eco52I CGGCCG 1 cut(s) 223
Eco57I CTGAAG 2 cut(s) 291, 1550
Eco88I CYCGRG 1 cut(s) 849
EcoNI CCTNNNNNAGG 1 cut(s) 740
EcoO109I RGGNCCY 1 cut(s) 722
EcoRII CCWGG 3 cut(s) 557, 594, 1687
EcoT14I CCWWGG 3 cut(s) 145, 327, 1671
EcoT22I ATGCAT 1 cut(s) 1601
ErhI CCWWGG 3 cut(s) 145, 327, 1671
FalI AAGNNNNNCTT 4 cut(s) 876, 908, 1282, 1314
FaqI GGGAC 2 cut(s) 542, 1251
FbaI TGATCA 2 cut(s) 1438, 1449
FblI GTMKAC 1 cut(s) 658
Fnu4HI GCNGC 4 cut(s) 131, 789, 979, 1272
FokI GGATG 4 cut(s) 362, 779, 1415, 1553
Fsp4HI GCNGC 4 cut(s) 131, 789, 979, 1272
FspBI CTAG 4 cut(s) 453, 642, 815, 932
GlaI GCGC 1 cut(s) 143
GluI GCNGC 4 cut(s) 131, 789, 979, 1272
GsuI CTGGAG 2 cut(s) 617, 1599
HaeIII GGCC 4 cut(s) 225, 819, 1041, 1670
HapII CCGG 1 cut(s) 649
HhaI GCGC 1 cut(s) 144
Hin1I GRCGYC 1 cut(s) 29
Hin6I GCGC 1 cut(s) 142
HinP1I GCGC 1 cut(s) 142
HincII GTYRAC 2 cut(s) 368, 1585
HindII GTYRAC 2 cut(s) 368, 1585
HinfI GANTC 6 cut(s) 257, 372, 449, 601, 674, 1515
HpaII CCGG 1 cut(s) 649
HphI GGTGA 1 cut(s) 1459
Hpy166II GTNNAC 4 cut(s) 216, 368, 659, 1585
Hpy188III TCNNGA 8 cut(s) 347, 453, 872, 1236, 1538, 1578, 1621, 1642
Hpy8I GTNNAC 4 cut(s) 216, 368, 659, 1585
Hpy99I CGWCG 3 cut(s) 31, 34, 1137
HpyAV CCTTC 4 cut(s) 391, 713, 1525, 1585
HpyCH4III ACNGT 5 cut(s) 265, 429, 656, 1340, 1493
HpyCH4IV ACGT 2 cut(s) 29, 99
HpyF10VI GCNNNNNNNGC 9 cut(s) 139, 311, 984, 1058, 1171, 1304, 1386, 1403, 1479
HpyF3I CTNAG 6 cut(s) 123, 392, 463, 471, 1128, 1398
HpySE526I ACGT 2 cut(s) 29, 99
Hsp92I GRCGYC 1 cut(s) 29
HspAI GCGC 1 cut(s) 142
Ksp22I TGATCA 2 cut(s) 1438, 1449
LguI GCTCTTC 1 cut(s) 1164
LmnI GCTCC 5 cut(s) 318, 574, 975, 1525, 1540
Lsp1109I GCAGC 4 cut(s) 142, 775, 965, 1258
LweI GCATC 2 cut(s) 117, 1393
MaeI CTAG 4 cut(s) 453, 642, 815, 932
MaeII ACGT 2 cut(s) 29, 99
MaeIII GTNAC 3 cut(s) 265, 1088, 1261
MboII GAAGA 4 cut(s) 730, 1181, 1606, 1692
MflI RGATCY 2 cut(s) 776, 1484
MhlI GDGCHC 1 cut(s) 1387
MlsI TGGCCA 1 cut(s) 1670
MluNI TGGCCA 1 cut(s) 1670
MlyI GAGTC 1 cut(s) 683
Mox20I TGGCCA 1 cut(s) 1670
Mph1103I ATGCAT 1 cut(s) 1601
MscI TGGCCA 1 cut(s) 1670
MseI TTAA 4 cut(s) 863, 1023, 1287, 1419
MslI CAYNNNNRTG 1 cut(s) 225
Msp20I TGGCCA 1 cut(s) 1670
MspA1I CMGCKG 2 cut(s) 109, 1211
MspI CCGG 1 cut(s) 649
MspR9I CCNGG 3 cut(s) 559, 596, 1689
Mva1269I GAATGC 3 cut(s) 844, 981, 1484
MvaI CCWGG 3 cut(s) 559, 596, 1689
MwoI GCNNNNNNNGC 9 cut(s) 139, 311, 984, 1058, 1171, 1304, 1386, 1403, 1479
NcoI CCATGG 2 cut(s) 145, 327
NheI GCTAGC 1 cut(s) 931
NlaIV GGNNCC 3 cut(s) 320, 500, 1536
NmeAIII GCCGAG 1 cut(s) 269
NmuCI GTSAC 1 cut(s) 1261
NsiI ATGCAT 1 cut(s) 1601
NspI RCATGY 1 cut(s) 1508
NspV TTCGAA 1 cut(s) 836
OliI CACNNNNGTG 1 cut(s) 225
PaeI GCATGC 1 cut(s) 1508
PagI TCATGA 1 cut(s) 1641
PciSI GCTCTTC 1 cut(s) 1164
PctI GAATGC 3 cut(s) 844, 981, 1484
PfeI GAWTC 5 cut(s) 257, 372, 449, 601, 1515
PflFI GACNNNGTC 1 cut(s) 28
PflMI CCANNNNNTGG 1 cut(s) 328
PkrI GCNGC 4 cut(s) 132, 790, 980, 1273
PleI GAGTC 1 cut(s) 682
PpsI GAGTC 1 cut(s) 682
PpuMI RGGWCCY 1 cut(s) 722
Psp1406I AACGTT 1 cut(s) 99
Psp5II RGGWCCY 1 cut(s) 722
Psp6I CCWGG 3 cut(s) 557, 594, 1687
PspGI CCWGG 3 cut(s) 557, 594, 1687
PspN4I GGNNCC 3 cut(s) 320, 500, 1536
PspPI GGNCC 5 cut(s) 80, 353, 722, 733, 1077
PspPPI RGGWCCY 1 cut(s) 722
PstI CTGCAG 1 cut(s) 1276
PsuI RGATCY 2 cut(s) 776, 1484
PsyI GACNNNGTC 1 cut(s) 28
PvuII CAGCTG 2 cut(s) 109, 1211
RsaI GTAC 3 cut(s) 236, 653, 891
RsaNI GTAC 3 cut(s) 235, 652, 890
RseI CAYNNNNRTG 1 cut(s) 225
SapI GCTCTTC 1 cut(s) 1164
SaqAI TTAA 4 cut(s) 863, 1023, 1287, 1419
SatI GCNGC 4 cut(s) 131, 789, 979, 1272
Sau96I GGNCC 5 cut(s) 80, 353, 722, 733, 1077
SchI GAGTC 1 cut(s) 683
ScrFI CCNGG 3 cut(s) 559, 596, 1689
SduI GDGCHC 1 cut(s) 1387
SfaNI GCATC 2 cut(s) 117, 1393
SfcI CTRYAG 2 cut(s) 918, 1272
SfuI TTCGAA 1 cut(s) 836
SinI GGWCC 5 cut(s) 80, 353, 722, 733, 1077
SmiMI CAYNNNNRTG 1 cut(s) 225
SmlI CTYRAG 1 cut(s) 870
SmoI CTYRAG 1 cut(s) 870
SphI GCATGC 1 cut(s) 1508
SsiI CCGC 3 cut(s) 241, 563, 1180
SspI AATATT 1 cut(s) 1628
SspMI CTAG 4 cut(s) 453, 642, 815, 932
StyD4I CCNGG 3 cut(s) 557, 594, 1687
StyI CCWWGG 3 cut(s) 145, 327, 1671
TaaI ACNGT 5 cut(s) 265, 429, 656, 1340, 1493
TaiI ACGT 2 cut(s) 32, 102
TaqI TCGA 4 cut(s) 45, 520, 836, 1044
TaqII GACCGA 1 cut(s) 68
TatI WGTACW 2 cut(s) 234, 889
TfiI GAWTC 5 cut(s) 257, 372, 449, 601, 1515
Tru1I TTAA 4 cut(s) 863, 1023, 1287, 1419
Tru9I TTAA 4 cut(s) 863, 1023, 1287, 1419
TscAI CASTG 5 cut(s) 184, 961, 994, 1006, 1671
TseFI GTSAC 1 cut(s) 1261
TseI GCWGC 4 cut(s) 130, 788, 978, 1271
Tsp45I GTSAC 1 cut(s) 1261
TspDTI ATGAA 7 cut(s) 506, 797, 888, 1359, 1491, 1606, 1658
TspGWI ACGGA 1 cut(s) 1090
TspRI CASTG 5 cut(s) 184, 961, 994, 1006, 1671
Tth111I GACNNNGTC 1 cut(s) 28
Van91I CCANNNNNTGG 1 cut(s) 328
VpaK11BI GGWCC 5 cut(s) 80, 353, 722, 733, 1077
XagI CCTNNNNNAGG 1 cut(s) 740
XapI RAATTY 4 cut(s) 86, 803, 948, 1415
XbaI TCTAGA 1 cut(s) 452
XceI RCATGY 1 cut(s) 1508
XmiI GTMKAC 1 cut(s) 658
XspI CTAG 4 cut(s) 453, 642, 815, 932
ZraI GACGTC 1 cut(s) 30
Zsp2I ATGCAT 1 cut(s) 1601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.