Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0013672

Physical Location & Seq

Genomic Coordinates Forward (+)

5868302 .. 5869749

Gene Structure 1448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g10260.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGGAACTACTGCACGAACTCAAAACGAGGGCGTCCGTGGCCGGAGGAAGTCATCGTCGAGAGGGCACCACAGGTTTGTGGGAGTGAGGCAGAGGCCGTCGGGAAGATGGGTGGCGGAGATCAAAGACTCGTTGCAAAAGGTCAGGCTTTGGCTCGGGACTTTCGACACTGCTGAGGATGCTGCTAGGGCTTATGATGAAGCCGCACGAACGTTGCGCGGCCCAAACGCCCGCACTAACTTCGAACTTCCTATGTCGAGTAATGGTGCGGGCGTGGGAGGTTCGGAAAATATGGAACCGTTTTCGTTCGAGACTGATTGTGACAATGGAGCTGAAGCAGATGGGTTGCGTGGTGCGCTCAAGGCTAAGTTGCTTGATGGCAAGGGACTTGGTCGGGTGCATGAGAAGATTGATCCGTGTCCTCCTGTTGTGCCACGTGGCGGTGGGGTTGGATTTGCGAACCCTCCTATTCAGCAGGGTTCATATGTAGCAGGGTCCTCAGAACAAAAAAGTGTTGCTCAAAATGAGTGTATACAACTTCTCTCTCACAAAAATGATCGCGTGACCGGCGATGAACTTAGGTTTGATGTCCGAGATCAGACAGAGGCGACTGCGGCCGGTCACGCTGCGTTGAACCCGGGAATGGTGTGGAGCAATGAATCTCCGGCATATGAAGTGCCTTGGTCCAACACACTGCCTATGTCTACATGGCCTGTATCGACTGATCATCAGCAGTCAATTGTGAATATGTCATATACAGATCAGTGTCCGATGGAGTTGCCAACAACGAGTAGAGATCACGGTAAAGTGACCGTAACGCAGCAAATGTCACAGATTGAAGGAGGCATGGAAGGTGGTGGTGCTTGGCCTGCAGAGCAGCAGTACTTGCAGTTCGAAAACAGTTGGGCAGCTGCTGCTGCTAATGGCACTTGGGAATCCCCAGGCCCCTTCTATCACCCTTCTGTGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035864 GO:0035865 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048364 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

324

Amino Acids

34.99

Weight (kDa)

5.66

Isoelectric Point (pI)

45.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	25 - 74	2.9e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013672)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g10260
malus_domestica	MD00G1118900.v1.1 MD06G1125700.v1.1
prunus_persica	Prupe.5G136200_v2.0.a1
pyrus_communis	pycom06g11610 pycom14g11740
rosa_chinensis	RchiOBHm_Chr7g0187951
rosa_laevigata	RLG00000004742
rosa_multiflora	Rmu_sc0015523.1_g000010 Rmu_sc0018017.1_g000002 Rmu_sc0029514.1_g000002
rosa_roxburghii	Rroxscaffold_3G00266900
rosa_rugosa	Rorug06G0486500
rosa_samantha	Rh7AG090800 Rh7BG092400 Rh7CG091700 Rh7DG093200
rosa_wichuraiana	Rw7G007840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	66
AccI	GTMKAC	2 cut(s)	532, 704
AccII	CGCG	2 cut(s)	219, 561
AciI	CCGC	7 cut(s)	116, 204, 219, 232, 269, 441, 614
AclI	AACGTT	1 cut(s)	212
AclWI	GGATC	1 cut(s)	407
AcoI	YGGCCR	2 cut(s)	40, 615
AcuI	CTGAAG	1 cut(s)	354
AcvI	CACGTG	1 cut(s)	437
AcyI	GRCGYC	1 cut(s)	33
AfaI	GTAC	1 cut(s)	884
AfiI	CCNNNNNNNGG	2 cut(s)	440, 643
AgsI	TTSAA	2 cut(s)	634, 839
AjnI	CCWGG	1 cut(s)	940
AluBI	AGCT	2 cut(s)	332, 911
AluI	AGCT	2 cut(s)	332, 911
Alw26I	GTCTC	1 cut(s)	305
AlwI	GGATC	1 cut(s)	407
AlwNI	CAGNNNCTG	1 cut(s)	914
Ama87I	CYCGRG	2 cut(s)	155, 637
AoxI	GGCC	7 cut(s)	40, 95, 220, 615, 710, 866, 943
ApeKI	GCWGC	8 cut(s)	182, 626, 820, 877, 908, 911, 914, 917
AspLEI	GCGC	2 cut(s)	219, 358
AspS9I	GGNCC	4 cut(s)	221, 495, 684, 944
AsuC2I	CCSGG	2 cut(s)	638, 639
AsuHPI	GGTGA	1 cut(s)	947
AsuII	TTCGAA	2 cut(s)	243, 894
AvaI	CYCGRG	2 cut(s)	155, 637
AvaII	GGWCC	2 cut(s)	495, 684
BaeGI	GKGCMC	1 cut(s)	69
BanI	GGYRCC	1 cut(s)	66
BbrPI	CACGTG	1 cut(s)	437
BbvCI	CCTCAGC	1 cut(s)	174
BbvI	GCAGC	8 cut(s)	169, 613, 832, 889, 898, 901, 904, 920
BccI	CCATC	4 cut(s)	102, 335, 371, 766
BceAI	ACGGC	1 cut(s)	82
BcgI	CGANNNNNNTGC	4 cut(s)	223, 257, 760, 794
BciT130I	CCWGG	1 cut(s)	942
BclI	TGATCA	1 cut(s)	724
BcnI	CCSGG	2 cut(s)	638, 639
BcoDI	GTCTC	1 cut(s)	305
BfaI	CTAG	1 cut(s)	186
BfmI	CTRYAG	1 cut(s)	870
BmcAI	AGTACT	1 cut(s)	884
Bme1390I	CCNGG	3 cut(s)	638, 639, 942
Bme18I	GGWCC	2 cut(s)	495, 684
BmeT110I	CYCGRG	2 cut(s)	155, 637
BmgT120I	GGNCC	4 cut(s)	221, 495, 684, 944
BmiI	GGNNCC	4 cut(s)	68, 297, 496, 946
BmrFI	CCNGG	3 cut(s)	638, 639, 942
BmsI	GCATC	1 cut(s)	169
Bpu10I	CCTNAGC	1 cut(s)	174
Bpu14I	TTCGAA	2 cut(s)	243, 894
BpuEI	CTTGAG	1 cut(s)	344
BpuMI	CCSGG	2 cut(s)	638, 639
BsaAI	YACGTR	1 cut(s)	437
BsaHI	GRCGYC	1 cut(s)	33
BsaJI	CCNNGG	4 cut(s)	37, 637, 680, 940
Bsc4I	CCNNNNNNNGG	2 cut(s)	440, 643
Bse118I	RCCGGY	2 cut(s)	566, 617
Bse3DI	GCAATG	1 cut(s)	661
BseBI	CCWGG	1 cut(s)	942
BseDI	CCNNGG	4 cut(s)	37, 637, 680, 940
BseGI	GGATG	1 cut(s)	184
BseLI	CCNNNNNNNGG	2 cut(s)	440, 643
BseMI	GCAATG	1 cut(s)	661
BseMII	CTCAG	2 cut(s)	165, 513
BseSI	GKGCMC	1 cut(s)	69
BseX3I	CGGCCG	1 cut(s)	615
BseXI	GCAGC	8 cut(s)	169, 613, 832, 889, 898, 901, 904, 920
Bsh1236I	CGCG	2 cut(s)	219, 561
Bsh1285I	CGRYCG	1 cut(s)	618
BshFI	GGCC	7 cut(s)	42, 97, 222, 617, 712, 868, 945
BshNI	GGYRCC	1 cut(s)	66
BsiEI	CGRYCG	1 cut(s)	618
BsiHKCI	CYCGRG	2 cut(s)	155, 637
BsiSI	CCGG	5 cut(s)	43, 567, 618, 638, 665
BslFI	GGGAC	2 cut(s)	172, 399
BslI	CCNNNNNNNGG	2 cut(s)	440, 643
BsmAI	GTCTC	1 cut(s)	305
BsmFI	GGGAC	2 cut(s)	172, 399
BsnI	GGCC	7 cut(s)	42, 97, 222, 617, 712, 868, 945
BsoBI	CYCGRG	2 cut(s)	155, 637
Bsp119I	TTCGAA	2 cut(s)	243, 894
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	7 cut(s)	120, 412, 556, 595, 724, 760, 796
BspACI	CCGC	7 cut(s)	116, 204, 219, 232, 269, 441, 614
BspANI	GGCC	7 cut(s)	42, 97, 222, 617, 712, 868, 945
BspCNI	CTCAG	2 cut(s)	166, 512
BspFNI	CGCG	2 cut(s)	219, 561
BspLI	GGNNCC	4 cut(s)	68, 297, 496, 946
BspMAI	CTGCAG	1 cut(s)	874
BspPI	GGATC	1 cut(s)	407
BspT104I	TTCGAA	2 cut(s)	243, 894
BspT107I	GGYRCC	1 cut(s)	66
BsrDI	GCAATG	1 cut(s)	661
BsrFI	RCCGGY	2 cut(s)	566, 617
BssAI	RCCGGY	2 cut(s)	566, 617
BssECI	CCNNGG	4 cut(s)	37, 637, 680, 940
BssMI	GATC	7 cut(s)	120, 412, 556, 595, 724, 760, 796
BssNAI	GTATAC	1 cut(s)	533
BssNI	GRCGYC	1 cut(s)	33
BssT1I	CCWWGG	1 cut(s)	680
Bst1107I	GTATAC	1 cut(s)	533
Bst2UI	CCWGG	1 cut(s)	942
Bst4CI	ACNGT	4 cut(s)	300, 803, 814, 902
BstACI	GRCGYC	1 cut(s)	33
BstAPI	GCANNNNNTGC	2 cut(s)	886, 914
BstBAI	YACGTR	1 cut(s)	437
BstBI	TTCGAA	2 cut(s)	243, 894
BstC8I	GCNNGC	3 cut(s)	232, 271, 870
BstDEI	CTNAG	4 cut(s)	174, 366, 499, 578
BstDSI	CCRYGG	1 cut(s)	37
BstF5I	GGATG	1 cut(s)	184
BstFNI	CGCG	2 cut(s)	219, 561
BstHHI	GCGC	2 cut(s)	219, 358
BstKTI	GATC	7 cut(s)	123, 415, 559, 598, 727, 763, 799
BstMAI	GTCTC	1 cut(s)	305
BstMBI	GATC	7 cut(s)	120, 412, 556, 595, 724, 760, 796
BstMCI	CGRYCG	1 cut(s)	618
BstNI	CCWGG	1 cut(s)	942
BstSCI	CCNGG	3 cut(s)	636, 637, 940
BstSFI	CTRYAG	1 cut(s)	870
BstSLI	GKGCMC	1 cut(s)	69
BstUI	CGCG	2 cut(s)	219, 561
BstV1I	GCAGC	8 cut(s)	169, 613, 832, 889, 898, 901, 904, 920
BstZ17I	GTATAC	1 cut(s)	533
BstZI	CGGCCG	1 cut(s)	615
BsuRI	GGCC	7 cut(s)	42, 97, 222, 617, 712, 868, 945
BtgI	CCRYGG	1 cut(s)	37
BtgZI	GCGATG	1 cut(s)	585
BtsCI	GGATG	1 cut(s)	184
BtsI	GCAGTG	2 cut(s)	168, 692
BtsIMutI	CAGTG	3 cut(s)	168, 692, 770
Cac8I	GCNNGC	3 cut(s)	232, 271, 870
CaiI	CAGNNNCTG	1 cut(s)	914
CfoI	GCGC	2 cut(s)	219, 358
Cfr10I	RCCGGY	2 cut(s)	566, 617
Cfr13I	GGNCC	4 cut(s)	221, 495, 684, 944
Cfr9I	CCCGGG	1 cut(s)	637
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	1 cut(s)	883
CviAII	CATG	3 cut(s)	401, 708, 847
CviQI	GTAC	1 cut(s)	883
DdeI	CTNAG	4 cut(s)	174, 366, 499, 578
DpnI	GATC	7 cut(s)	122, 414, 558, 597, 726, 762, 798
DpnII	GATC	7 cut(s)	120, 412, 556, 595, 724, 760, 796
EaeI	YGGCCR	2 cut(s)	40, 615
EagI	CGGCCG	1 cut(s)	615
EciI	GGCGGA	1 cut(s)	131
EclXI	CGGCCG	1 cut(s)	615
Eco130I	CCWWGG	1 cut(s)	680
Eco47I	GGWCC	2 cut(s)	495, 684
Eco52I	CGGCCG	1 cut(s)	615
Eco57I	CTGAAG	1 cut(s)	354
Eco72I	CACGTG	1 cut(s)	437
Eco88I	CYCGRG	2 cut(s)	155, 637
EcoO109I	RGGNCCY	2 cut(s)	495, 944
EcoRII	CCWGG	1 cut(s)	940
EcoT14I	CCWWGG	1 cut(s)	680
ErhI	CCWWGG	1 cut(s)	680
FaeI	CATG	3 cut(s)	404, 711, 850
FaqI	GGGAC	2 cut(s)	172, 399
FatI	CATG	3 cut(s)	400, 707, 846
FauI	CCCGC	2 cut(s)	239, 262
FauNDI	CATATG	2 cut(s)	484, 670
FbaI	TGATCA	1 cut(s)	724
FblI	GTMKAC	2 cut(s)	532, 704
FokI	GGATG	1 cut(s)	191
FspBI	CTAG	1 cut(s)	186
GlaI	GCGC	2 cut(s)	218, 357
HaeIII	GGCC	7 cut(s)	42, 97, 222, 617, 712, 868, 945
HapII	CCGG	5 cut(s)	43, 567, 618, 638, 665
HgaI	GACGC	1 cut(s)	22
HhaI	GCGC	2 cut(s)	219, 358
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	3 cut(s)	404, 711, 850
Hin6I	GCGC	2 cut(s)	217, 356
HinP1I	GCGC	2 cut(s)	217, 356
HinfI	GANTC	3 cut(s)	128, 659, 935
HpaII	CCGG	5 cut(s)	43, 567, 618, 638, 665
HphI	GGTGA	1 cut(s)	947
Hpy166II	GTNNAC	2 cut(s)	533, 705
Hpy188I	TCNGA	5 cut(s)	286, 502, 593, 600, 771
Hpy188III	TCNNGA	5 cut(s)	60, 102, 157, 310, 969
Hpy8I	GTNNAC	2 cut(s)	533, 705
Hpy99I	CGWCG	2 cut(s)	61, 103
HpyAV	CCTTC	4 cut(s)	833, 845, 958, 969
HpyCH4III	ACNGT	4 cut(s)	300, 803, 814, 902
HpyCH4IV	ACGT	2 cut(s)	212, 436
HpyCH4V	TGCA	5 cut(s)	14, 136, 400, 872, 889
HpyF3I	CTNAG	4 cut(s)	174, 366, 499, 578
HpySE526I	ACGT	2 cut(s)	212, 436
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	3 cut(s)	404, 711, 850
HspAI	GCGC	2 cut(s)	217, 356
Ksp22I	TGATCA	1 cut(s)	724
Kzo9I	GATC	7 cut(s)	120, 412, 556, 595, 724, 760, 796
LmnI	GCTCC	2 cut(s)	329, 651
Lsp1109I	GCAGC	8 cut(s)	169, 613, 832, 889, 898, 901, 904, 920
LweI	GCATC	1 cut(s)	169
MaeI	CTAG	1 cut(s)	186
MaeII	ACGT	2 cut(s)	212, 436
MaeIII	GTNAC	6 cut(s)	320, 562, 620, 808, 814, 828
MalI	GATC	7 cut(s)	122, 414, 558, 597, 726, 762, 798
MboI	GATC	7 cut(s)	120, 412, 556, 595, 724, 760, 796
MboII	GAAGA	2 cut(s)	117, 418
MfeI	CAATTG	1 cut(s)	738
MhlI	GDGCHC	1 cut(s)	69
MluCI	AATT	1 cut(s)	738
MlyI	GAGTC	1 cut(s)	122
MmeI	TCCRAC	2 cut(s)	430, 711
MslI	CAYNNNNRTG	1 cut(s)	552
MspA1I	CMGCKG	1 cut(s)	911
MspI	CCGG	5 cut(s)	43, 567, 618, 638, 665
MspR9I	CCNGG	3 cut(s)	638, 639, 942
MunI	CAATTG	1 cut(s)	738
MvaI	CCWGG	1 cut(s)	942
MvnI	CGCG	2 cut(s)	219, 561
NciI	CCSGG	2 cut(s)	638, 639
NdeI	CATATG	2 cut(s)	484, 670
NdeII	GATC	7 cut(s)	120, 412, 556, 595, 724, 760, 796
NlaIII	CATG	3 cut(s)	404, 711, 850
NlaIV	GGNNCC	4 cut(s)	68, 297, 496, 946
NmuCI	GTSAC	5 cut(s)	320, 562, 620, 808, 828
NspV	TTCGAA	2 cut(s)	243, 894
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PfeI	GAWTC	2 cut(s)	659, 935
PflFI	GACNNNGTC	1 cut(s)	390
PleI	GAGTC	1 cut(s)	122
PmaCI	CACGTG	1 cut(s)	437
PmlI	CACGTG	1 cut(s)	437
PpsI	GAGTC	1 cut(s)	122
Ppu21I	YACGTR	1 cut(s)	437
PpuMI	RGGWCCY	1 cut(s)	495
Psp1406I	AACGTT	1 cut(s)	212
Psp5II	RGGWCCY	1 cut(s)	495
Psp6I	CCWGG	1 cut(s)	940
PspCI	CACGTG	1 cut(s)	437
PspGI	CCWGG	1 cut(s)	940
PspN4I	GGNNCC	4 cut(s)	68, 297, 496, 946
PspPI	GGNCC	4 cut(s)	221, 495, 684, 944
PspPPI	RGGWCCY	1 cut(s)	495
PsrI	GAACNNNNNNTAC	2 cut(s)	875, 907
PstI	CTGCAG	1 cut(s)	874
PstNI	CAGNNNCTG	1 cut(s)	914
PsyI	GACNNNGTC	1 cut(s)	390
PvuII	CAGCTG	1 cut(s)	911
RsaI	GTAC	1 cut(s)	884
RsaNI	GTAC	1 cut(s)	883
RseI	CAYNNNNRTG	1 cut(s)	552
Sau3AI	GATC	7 cut(s)	120, 412, 556, 595, 724, 760, 796
Sau96I	GGNCC	4 cut(s)	221, 495, 684, 944
ScaI	AGTACT	1 cut(s)	884
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	3 cut(s)	638, 639, 942
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	9 cut(s)	77, 144, 215, 283, 334, 439, 584, 856, 913
SfaNI	GCATC	1 cut(s)	169
SfcI	CTRYAG	1 cut(s)	870
SfuI	TTCGAA	2 cut(s)	243, 894
SinI	GGWCC	2 cut(s)	495, 684
SmaI	CCCGGG	1 cut(s)	639
SmiMI	CAYNNNNRTG	1 cut(s)	552
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	1 cut(s)	738
SsiI	CCGC	7 cut(s)	116, 204, 219, 232, 269, 441, 614
SspMI	CTAG	1 cut(s)	186
StyD4I	CCNGG	3 cut(s)	636, 637, 940
StyI	CCWWGG	1 cut(s)	680
TaaI	ACNGT	4 cut(s)	300, 803, 814, 902
TaiI	ACGT	2 cut(s)	215, 439
TaqI	TCGA	7 cut(s)	59, 165, 243, 257, 309, 719, 894
TasI	AATT	1 cut(s)	738
TatI	WGTACW	1 cut(s)	882
TauI	GCSGC	3 cut(s)	206, 222, 617
TfiI	GAWTC	2 cut(s)	659, 935
TscAI	CASTG	3 cut(s)	175, 699, 770
TseFI	GTSAC	5 cut(s)	320, 562, 620, 808, 828
TseI	GCWGC	8 cut(s)	182, 626, 820, 877, 908, 911, 914, 917
Tsp45I	GTSAC	5 cut(s)	320, 562, 620, 808, 828
TspDTI	ATGAA	5 cut(s)	213, 471, 588, 672, 687
TspGWI	ACGGA	2 cut(s)	26, 405
TspMI	CCCGGG	1 cut(s)	637
TspRI	CASTG	3 cut(s)	175, 699, 770
Tth111I	GACNNNGTC	1 cut(s)	390
VpaK11BI	GGWCC	2 cut(s)	495, 684
XmaI	CCCGGG	1 cut(s)	637
XmiI	GTMKAC	2 cut(s)	532, 704
XspI	CTAG	1 cut(s)	186
ZrmI	AGTACT	1 cut(s)	884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.