Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0013672

Physical Location & Seq

Genomic Coordinates Reverse (-)

14816752 .. 14817615

Gene Structure 864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g11740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGCTTTGCGGGAACAAAACGACGGCGTTCGGGGGAGGAAGAAGAAGTCGACGAGAGGCCACCACCGGTTCGTGGGAGTCCGGCAGAGGCCGTCCGGGAGATGGGTCGCGGAGATCAAGGACTCTCTACAGAAAGTGAGGCTCTGGCTCGGGACATTCGACACTGCAGAGGATGCCGCTCGGGCATATGATGATGCTGCTCGAGCGCTCCGCGGTGCCAACGCCCGAACCAATTTTGAGCTGCCACAGAGTGCTGGGGCCGGGGGCGTGGAGGAAATTGTGGAGCCGTTCTCGTTTGAGGCGGTGTGTGGGAATGTGGTGGAAGCTGATGGGTTGCTGGGTGCACTTAGAGCTAAGTTGCAGGATGGTAAGGGGATAACTGGCGTACTCCCACAACCACCACAGGGAACTAGTGGGACGAAACCGGAGTCAGTTAGTCTACGTGGTGCGGCGGCGGGATTCGTGAACCCGCACAAGGAGGACCCAATTGTGTTAGAAAATCAGTGGCAGCATCAGGTTCACCCTTGTCCAAAACCATCAAACCCAAACATGGTGTGGACCAATGAGAGTCAAGCAGCATATGAGCAAGTGCCTAATTGGTCCACGTGGTCGAATAACAACATGCTGTATGTACCAGAACAATGCGTTATGGAGCCTCCGTTGCCTATTGCAAGCATTGGCGATGCTAAAGTGATGGCGGCGGGTACGCAGCATCTGTCACAGATTGATGGTAATGGTGGTAGTGGTGGTGGTGGTGCTTGGTGTTCAGATCAGCAGCAGCTTTTGCACTGTGACAGTAGCAATTGGGGAGGAGCTAATGGCAGTTGGGATCCTCTTTTTTATGCCTCATCTGTGCTGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035864 GO:0035865 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048364 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

288

Amino Acids

30.84

Weight (kDa)

5.99

Isoelectric Point (pI)

38.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	23 - 72	1.1e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013672)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g10260
malus_domestica	MD00G1118900.v1.1 MD06G1125700.v1.1
prunus_persica	Prupe.5G136200_v2.0.a1
pyrus_communis	pycom06g11610 pycom14g11740
rosa_chinensis	RchiOBHm_Chr7g0187951
rosa_laevigata	RLG00000004742
rosa_multiflora	Rmu_sc0015523.1_g000010 Rmu_sc0018017.1_g000002 Rmu_sc0029514.1_g000002
rosa_roxburghii	Rroxscaffold_3G00266900
rosa_rugosa	Rorug06G0486500
rosa_samantha	Rh7AG090800 Rh7BG092400 Rh7CG091700 Rh7DG093200
rosa_wichuraiana	Rw7G007840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	215
AccBSI	CCGCTC	1 cut(s)	179
AccI	GTMKAC	2 cut(s)	50, 439
AccII	CGCG	2 cut(s)	110, 213
AclWI	GGATC	2 cut(s)	824, 837
AcvI	CACGTG	1 cut(s)	606
AdeI	CACNNNGTG	1 cut(s)	251
AfaI	GTAC	3 cut(s)	387, 633, 706
AfeI	AGCGCT	1 cut(s)	207
AfiI	CCNNNNNNNGG	5 cut(s)	73, 102, 404, 475, 550
AgeI	ACCGGT	1 cut(s)	66
AhlI	ACTAGT	1 cut(s)	410
AluBI	AGCT	5 cut(s)	241, 326, 353, 781, 815
AluI	AGCT	5 cut(s)	241, 326, 353, 781, 815
Alw21I	GWGCWC	1 cut(s)	346
Alw44I	GTGCAC	1 cut(s)	342
AlwI	GGATC	2 cut(s)	824, 837
AlwNI	CAGNNNCTG	1 cut(s)	715
Ama87I	CYCGRG	3 cut(s)	149, 180, 201
Aor51HI	AGCGCT	1 cut(s)	207
AoxI	GGCC	3 cut(s)	58, 89, 258
ApaLI	GTGCAC	1 cut(s)	342
ApeKI	GCWGC	7 cut(s)	197, 241, 508, 575, 709, 775, 778
ArsI	GACNNNNNNTTYG	2 cut(s)	413, 445
AsiGI	ACCGGT	1 cut(s)	66
AspLEI	GCGC	1 cut(s)	208
AspS9I	GGNCC	4 cut(s)	258, 481, 558, 600
AsuC2I	CCSGG	2 cut(s)	97, 262
AsuHPI	GGTGA	1 cut(s)	512
AvaI	CYCGRG	3 cut(s)	149, 180, 201
AvaII	GGWCC	3 cut(s)	481, 558, 600
BaeGI	GKGCMC	1 cut(s)	346
BamHI	GGATCC	1 cut(s)	829
BanI	GGYRCC	1 cut(s)	215
BbrPI	CACGTG	1 cut(s)	606
Bbv12I	GWGCWC	1 cut(s)	346
BbvI	GCAGC	7 cut(s)	184, 228, 520, 587, 721, 787, 790
BccI	CCATC	6 cut(s)	96, 323, 359, 544, 688, 722
BceAI	ACGGC	3 cut(s)	40, 76, 271
BcnI	CCSGG	2 cut(s)	97, 262
BcuI	ACTAGT	1 cut(s)	410
BfaI	CTAG	1 cut(s)	411
BfmI	CTRYAG	2 cut(s)	128, 165
BfoI	RGCGCY	1 cut(s)	209
BglI	GCCNNNNNGGC	1 cut(s)	182
Bme1390I	CCNGG	2 cut(s)	97, 262
Bme18I	GGWCC	3 cut(s)	481, 558, 600
BmeT110I	CYCGRG	3 cut(s)	149, 180, 201
BmgT120I	GGNCC	4 cut(s)	258, 481, 558, 600
BmiI	GGNNCC	6 cut(s)	217, 259, 285, 483, 654, 831
BmrFI	CCNGG	2 cut(s)	97, 262
BmsI	GCATC	5 cut(s)	163, 184, 520, 673, 721
BplI	GAGNNNNNCTC	2 cut(s)	275, 307
BpuMI	CCSGG	2 cut(s)	97, 262
BsaAI	YACGTR	2 cut(s)	443, 606
BsaJI	CCNNGG	2 cut(s)	211, 261
BsaWI	WCCGGW	2 cut(s)	66, 424
BsaXI	ACNNNNNCTCC	2 cut(s)	644, 674
Bsc4I	CCNNNNNNNGG	5 cut(s)	73, 102, 404, 475, 550
Bse118I	RCCGGY	1 cut(s)	66
Bse1I	ACTGG	1 cut(s)	385
BseDI	CCNNGG	2 cut(s)	211, 261
BseGI	GGATG	2 cut(s)	178, 370
BseLI	CCNNNNNNNGG	5 cut(s)	73, 102, 404, 475, 550
BseNI	ACTGG	1 cut(s)	385
BseRI	GAGGAG	1 cut(s)	825
BseSI	GKGCMC	1 cut(s)	346
BseXI	GCAGC	7 cut(s)	184, 228, 520, 587, 721, 787, 790
BseYI	CCCAGC	3 cut(s)	254, 337, 856
Bsh1236I	CGCG	2 cut(s)	110, 213
BshFI	GGCC	3 cut(s)	60, 91, 260
BshNI	GGYRCC	1 cut(s)	215
BshTI	ACCGGT	1 cut(s)	66
BsiHKAI	GWGCWC	1 cut(s)	346
BsiHKCI	CYCGRG	3 cut(s)	149, 180, 201
BsiSI	CCGG	5 cut(s)	67, 82, 96, 261, 425
BslFI	GGGAC	2 cut(s)	166, 430
BslI	CCNNNNNNNGG	5 cut(s)	73, 102, 404, 475, 550
BsmFI	GGGAC	2 cut(s)	166, 430
BsnI	GGCC	3 cut(s)	60, 91, 260
BsoBI	CYCGRG	3 cut(s)	149, 180, 201
Bsp1286I	GDGCHC	1 cut(s)	346
Bsp143I	GATC	3 cut(s)	114, 769, 829
BspANI	GGCC	3 cut(s)	60, 91, 260
BspFNI	CGCG	2 cut(s)	110, 213
BspLI	GGNNCC	6 cut(s)	217, 259, 285, 483, 654, 831
BspMAI	CTGCAG	1 cut(s)	169
BspPI	GGATC	2 cut(s)	824, 837
BspT107I	GGYRCC	1 cut(s)	215
BsrBI	CCGCTC	1 cut(s)	179
BsrFI	RCCGGY	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	385
BssAI	RCCGGY	1 cut(s)	66
BssECI	CCNNGG	2 cut(s)	211, 261
BssMI	GATC	3 cut(s)	114, 769, 829
Bst4CI	ACNGT	2 cut(s)	791, 797
BstAPI	GCANNNNNTGC	2 cut(s)	173, 784
BstBAI	YACGTR	2 cut(s)	443, 606
BstC8I	GCNNGC	1 cut(s)	673
BstDEI	CTNAG	2 cut(s)	347, 354
BstDSI	CCRYGG	1 cut(s)	211
BstF5I	GGATG	2 cut(s)	178, 370
BstFNI	CGCG	2 cut(s)	110, 213
BstH2I	RGCGCY	1 cut(s)	209
BstHHI	GCGC	1 cut(s)	208
BstKTI	GATC	3 cut(s)	117, 772, 832
BstMBI	GATC	3 cut(s)	114, 769, 829
BstMWI	GCNNNNNNNGC	6 cut(s)	173, 182, 203, 350, 661, 784
BstNSI	RCATGY	1 cut(s)	625
BstSCI	CCNGG	2 cut(s)	95, 260
BstSFI	CTRYAG	2 cut(s)	128, 165
BstSLI	GKGCMC	1 cut(s)	346
BstUI	CGCG	2 cut(s)	110, 213
BstV1I	GCAGC	7 cut(s)	184, 228, 520, 587, 721, 787, 790
BstX2I	RGATCY	1 cut(s)	829
BstYI	RGATCY	1 cut(s)	829
BsuRI	GGCC	3 cut(s)	60, 91, 260
BtgI	CCRYGG	1 cut(s)	211
BtgZI	GCGATG	1 cut(s)	696
BtsCI	GGATG	2 cut(s)	178, 370
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	3 cut(s)	162, 509, 787
Cac8I	GCNNGC	1 cut(s)	673
CaiI	CAGNNNCTG	1 cut(s)	715
CfoI	GCGC	1 cut(s)	208
Cfr10I	RCCGGY	1 cut(s)	66
Cfr13I	GGNCC	4 cut(s)	258, 481, 558, 600
Cfr42I	CCGCGG	1 cut(s)	214
Csp6I	GTAC	3 cut(s)	386, 632, 705
CspAI	ACCGGT	1 cut(s)	66
CviAII	CATG	2 cut(s)	550, 622
CviQI	GTAC	3 cut(s)	386, 632, 705
DdeI	CTNAG	2 cut(s)	347, 354
DpnI	GATC	3 cut(s)	116, 771, 831
DpnII	GATC	3 cut(s)	114, 769, 829
DraIII	CACNNNGTG	1 cut(s)	251
Eco47I	GGWCC	3 cut(s)	481, 558, 600
Eco47III	AGCGCT	1 cut(s)	207
Eco72I	CACGTG	1 cut(s)	606
Eco88I	CYCGRG	3 cut(s)	149, 180, 201
EcoO109I	RGGNCCY	1 cut(s)	481
FaeI	CATG	2 cut(s)	553, 625
FaiI	YATR	9 cut(s)	187, 189, 551, 580, 582, 623, 630, 650, 843
FaqI	GGGAC	2 cut(s)	166, 430
FatI	CATG	2 cut(s)	549, 621
FauI	CCCGC	4 cut(s)	3, 448, 477, 694
FauNDI	CATATG	2 cut(s)	187, 580
FblI	GTMKAC	2 cut(s)	50, 439
FokI	GGATG	2 cut(s)	185, 377
FspBI	CTAG	1 cut(s)	411
GlaI	GCGC	1 cut(s)	207
GsaI	CCCAGC	3 cut(s)	258, 341, 860
HaeII	RGCGCY	1 cut(s)	209
HaeIII	GGCC	3 cut(s)	60, 91, 260
HapII	CCGG	5 cut(s)	67, 82, 96, 261, 425
HhaI	GCGC	1 cut(s)	208
Hin1II	CATG	2 cut(s)	553, 625
Hin6I	GCGC	1 cut(s)	206
HinP1I	GCGC	1 cut(s)	206
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HinfI	GANTC	5 cut(s)	78, 122, 428, 459, 568
HpaII	CCGG	5 cut(s)	67, 82, 96, 261, 425
HphI	GGTGA	1 cut(s)	512
Hpy166II	GTNNAC	7 cut(s)	51, 344, 440, 466, 520, 558, 603
Hpy188I	TCNGA	1 cut(s)	769
Hpy188III	TCNNGA	2 cut(s)	151, 463
Hpy8I	GTNNAC	7 cut(s)	51, 344, 440, 466, 520, 558, 603
Hpy99I	CGWCG	2 cut(s)	26, 55
HpyCH4III	ACNGT	2 cut(s)	791, 797
HpyCH4IV	ACGT	2 cut(s)	442, 605
HpyCH4V	TGCA	5 cut(s)	167, 344, 361, 671, 787
HpyF10VI	GCNNNNNNNGC	6 cut(s)	173, 182, 203, 350, 661, 784
HpyF3I	CTNAG	2 cut(s)	347, 354
HpySE526I	ACGT	2 cut(s)	442, 605
Hsp92II	CATG	2 cut(s)	553, 625
HspAI	GCGC	1 cut(s)	206
KspI	CCGCGG	1 cut(s)	214
Kzo9I	GATC	3 cut(s)	114, 769, 829
LmnI	GCTCC	4 cut(s)	213, 283, 652, 812
Lsp1109I	GCAGC	7 cut(s)	184, 228, 520, 587, 721, 787, 790
LweI	GCATC	5 cut(s)	163, 184, 520, 673, 721
MaeI	CTAG	1 cut(s)	411
MaeII	ACGT	2 cut(s)	442, 605
MaeIII	GTNAC	2 cut(s)	717, 791
MalI	GATC	3 cut(s)	116, 771, 831
MbiI	CCGCTC	1 cut(s)	179
MboI	GATC	3 cut(s)	114, 769, 829
MboII	GAAGA	2 cut(s)	52, 55
MfeI	CAATTG	2 cut(s)	486, 802
MflI	RGATCY	1 cut(s)	829
MhlI	GDGCHC	1 cut(s)	346
MluCI	AATT	5 cut(s)	232, 276, 486, 595, 802
MlyI	GAGTC	4 cut(s)	87, 116, 437, 577
MspA1I	CMGCKG	1 cut(s)	213
MspI	CCGG	5 cut(s)	67, 82, 96, 261, 425
MspR9I	CCNGG	2 cut(s)	97, 262
MunI	CAATTG	2 cut(s)	486, 802
MvnI	CGCG	2 cut(s)	110, 213
MwoI	GCNNNNNNNGC	6 cut(s)	173, 182, 203, 350, 661, 784
NciI	CCSGG	2 cut(s)	97, 262
NdeI	CATATG	2 cut(s)	187, 580
NdeII	GATC	3 cut(s)	114, 769, 829
NlaIII	CATG	2 cut(s)	553, 625
NlaIV	GGNNCC	6 cut(s)	217, 259, 285, 483, 654, 831
NmuCI	GTSAC	2 cut(s)	717, 791
NspI	RCATGY	1 cut(s)	625
PaeR7I	CTCGAG	1 cut(s)	201
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	459
PfoI	TCCNGGA	1 cut(s)	95
PinAI	ACCGGT	1 cut(s)	66
PleI	GAGTC	4 cut(s)	86, 116, 436, 576
PmaCI	CACGTG	1 cut(s)	606
PmlI	CACGTG	1 cut(s)	606
PpsI	GAGTC	4 cut(s)	86, 116, 436, 576
Ppu21I	YACGTR	2 cut(s)	443, 606
PpuMI	RGGWCCY	1 cut(s)	481
Psp5II	RGGWCCY	1 cut(s)	481
PspCI	CACGTG	1 cut(s)	606
PspFI	CCCAGC	3 cut(s)	254, 337, 856
PspN4I	GGNNCC	6 cut(s)	217, 259, 285, 483, 654, 831
PspPI	GGNCC	4 cut(s)	258, 481, 558, 600
PspPPI	RGGWCCY	1 cut(s)	481
PspXI	VCTCGAGB	1 cut(s)	201
PstI	CTGCAG	1 cut(s)	169
PstNI	CAGNNNCTG	1 cut(s)	715
PsuI	RGATCY	1 cut(s)	829
RsaI	GTAC	3 cut(s)	387, 633, 706
RsaNI	GTAC	3 cut(s)	386, 632, 705
SacII	CCGCGG	1 cut(s)	214
SalI	GTCGAC	1 cut(s)	49
Sau3AI	GATC	3 cut(s)	114, 769, 829
Sau96I	GGNCC	4 cut(s)	258, 481, 558, 600
SchI	GAGTC	4 cut(s)	87, 116, 437, 577
ScrFI	CCNGG	2 cut(s)	97, 262
SduI	GDGCHC	1 cut(s)	346
SetI	ASST	8 cut(s)	243, 328, 355, 445, 519, 608, 783, 817
SfaNI	GCATC	5 cut(s)	163, 184, 520, 673, 721
SfcI	CTRYAG	2 cut(s)	128, 165
Sfr274I	CTCGAG	1 cut(s)	201
Sfr303I	CCGCGG	1 cut(s)	214
SgrBI	CCGCGG	1 cut(s)	214
SinI	GGWCC	3 cut(s)	481, 558, 600
SlaI	CTCGAG	1 cut(s)	201
SmlI	CTYRAG	1 cut(s)	201
SmoI	CTYRAG	1 cut(s)	201
SpeI	ACTAGT	1 cut(s)	410
Sse9I	AATT	5 cut(s)	232, 276, 486, 595, 802
SspMI	CTAG	1 cut(s)	411
StyD4I	CCNGG	2 cut(s)	95, 260
TaaI	ACNGT	2 cut(s)	791, 797
TaiI	ACGT	2 cut(s)	445, 608
TaqI	TCGA	4 cut(s)	50, 159, 202, 611
TasI	AATT	5 cut(s)	232, 276, 486, 595, 802
TauI	GCSGC	4 cut(s)	179, 452, 455, 701
TfiI	GAWTC	1 cut(s)	459
TscAI	CASTG	3 cut(s)	169, 509, 794
TseFI	GTSAC	2 cut(s)	717, 791
TseI	GCWGC	7 cut(s)	197, 241, 508, 575, 709, 775, 778
Tsp45I	GTSAC	2 cut(s)	717, 791
TspGWI	ACGGA	1 cut(s)	648
TspRI	CASTG	3 cut(s)	169, 509, 794
VneI	GTGCAC	1 cut(s)	342
VpaK11BI	GGWCC	3 cut(s)	481, 558, 600
XceI	RCATGY	1 cut(s)	625
XcmI	CCANNNNNNNNNTGG	1 cut(s)	552
XhoI	CTCGAG	1 cut(s)	201
XmiI	GTMKAC	2 cut(s)	50, 439
XspI	CTAG	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.