Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0013672

Physical Location & Seq

Genomic Coordinates Reverse (-)

25422289 .. 25423146

Gene Structure 858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1118900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCTTTGCGGGAACAAAACGACGGCGTTCGGGGGAGGAAGAAGAAGTCGACGAGAGGCCACCACCGGTTCGTGGGAGTCCGGCAGAGGCCGTCTGGGAGATGGGTCGCGGAGATCAAGGACTCTCTACAGAAAGTGAGGCTCTGGCTCGGGACATTCGACACTGCGGAGGATGCCGCTCGGGCATATGATGGTGCTGCTCGAGCGCTCCGCGGTGCCAACGCCCGAACCAATTTTGAGCTACCACAGAGTGCTGGGTCCGGGGGCGTGGAGGAAATTGTGGAGCCCTTTTCGTTTGAGGCGGTGTGTGGGAATGTGGTGGAAGCTGATGGGTTGCTGGGTGCACTTAAAGCAAAGTTGCAGGATGGTAAGGGAATAACTGGCGTACTCCCACAACCACCACAAGGAACTAGTGGGACGAAACCGGAGTCAGTTAGTCTACGTGGTGCGGTGGCGGGATTCGTGAACCCGCACAAGGAGGACCCAATTGTTTTAGAAAATCAGTGGCAGCATCAGGTTCACCCTTGTCCAACACCATCAAACCCAAACATGGTGTGGACCAATGAGAGTCAAGCAGCATATGAGCAAGTGCCTAATTGGTCCACGTGGTCGAATAACAACATGCCGTATGTACCAGAACAATGCGTTATGGAGCCTCCGTTGCCAATTGCAAGCATTGGCGATGCTAAAGTGATGGCGGCGGGCACGCAGCAGCTGTCACAGATTGATGGTAATGGTGGTGGTGGTGGTGCTTGGTGTTCAGATCAGCAGCAGTTTTTGCACTGTGACAGTAGCAATTGGGGAGGAGCTAATGGCAGTTGGGATCCTCTTTTTTATGCCTCATCTGTGCTGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035864 GO:0035865 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048364 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

286

Amino Acids

30.63

Weight (kDa)

5.89

Isoelectric Point (pI)

40.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	23 - 72	4.1e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013672)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g10260
malus_domestica	MD00G1118900.v1.1 MD06G1125700.v1.1
prunus_persica	Prupe.5G136200_v2.0.a1
pyrus_communis	pycom06g11610 pycom14g11740
rosa_chinensis	RchiOBHm_Chr7g0187951
rosa_laevigata	RLG00000004742
rosa_multiflora	Rmu_sc0015523.1_g000010 Rmu_sc0018017.1_g000002 Rmu_sc0029514.1_g000002
rosa_roxburghii	Rroxscaffold_3G00266900
rosa_rugosa	Rorug06G0486500
rosa_samantha	Rh7AG090800 Rh7BG092400 Rh7CG091700 Rh7DG093200
rosa_wichuraiana	Rw7G007840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	215
AccBSI	CCGCTC	1 cut(s)	179
AccI	GTMKAC	2 cut(s)	50, 439
AccII	CGCG	2 cut(s)	110, 213
AclWI	GGATC	2 cut(s)	818, 831
AcvI	CACGTG	1 cut(s)	606
AdeI	CACNNNGTG	1 cut(s)	251
AfaI	GTAC	2 cut(s)	387, 633
AfeI	AGCGCT	1 cut(s)	207
AfiI	CCNNNNNNNGG	4 cut(s)	73, 404, 475, 550
AgeI	ACCGGT	1 cut(s)	66
AhlI	ACTAGT	1 cut(s)	410
AluBI	AGCT	4 cut(s)	241, 326, 715, 809
AluI	AGCT	4 cut(s)	241, 326, 715, 809
Alw21I	GWGCWC	1 cut(s)	346
Alw44I	GTGCAC	1 cut(s)	342
AlwI	GGATC	2 cut(s)	818, 831
AlwNI	CAGNNNCTG	1 cut(s)	715
Ama87I	CYCGRG	3 cut(s)	149, 180, 201
Aor51HI	AGCGCT	1 cut(s)	207
AoxI	GGCC	2 cut(s)	58, 89
ApaLI	GTGCAC	1 cut(s)	342
ApeKI	GCWGC	6 cut(s)	197, 508, 575, 709, 712, 769
ArsI	GACNNNNNNTTYG	2 cut(s)	413, 445
AsiGI	ACCGGT	1 cut(s)	66
AspLEI	GCGC	1 cut(s)	208
AspS9I	GGNCC	4 cut(s)	258, 481, 558, 600
AsuC2I	CCSGG	1 cut(s)	262
AsuHPI	GGTGA	1 cut(s)	512
AvaI	CYCGRG	3 cut(s)	149, 180, 201
AvaII	GGWCC	4 cut(s)	258, 481, 558, 600
BaeGI	GKGCMC	2 cut(s)	346, 707
BamHI	GGATCC	1 cut(s)	823
BanI	GGYRCC	1 cut(s)	215
BanII	GRGCYC	1 cut(s)	288
BbrPI	CACGTG	1 cut(s)	606
Bbv12I	GWGCWC	1 cut(s)	346
BbvI	GCAGC	6 cut(s)	184, 520, 587, 721, 724, 781
BccI	CCATC	7 cut(s)	96, 185, 323, 359, 544, 688, 722
BceAI	ACGGC	3 cut(s)	40, 76, 610
BcnI	CCSGG	1 cut(s)	262
BcuI	ACTAGT	1 cut(s)	410
BfaI	CTAG	1 cut(s)	411
BfmI	CTRYAG	1 cut(s)	128
BfoI	RGCGCY	1 cut(s)	209
BglI	GCCNNNNNGGC	1 cut(s)	182
BisI	GCNGC	8 cut(s)	177, 198, 509, 576, 699, 710, 713, 770
BlsI	GCNGC	8 cut(s)	178, 199, 510, 577, 700, 711, 714, 771
Bme1390I	CCNGG	1 cut(s)	262
Bme18I	GGWCC	4 cut(s)	258, 481, 558, 600
BmeT110I	CYCGRG	3 cut(s)	149, 180, 201
BmgT120I	GGNCC	4 cut(s)	258, 481, 558, 600
BmiI	GGNNCC	6 cut(s)	217, 259, 285, 483, 654, 825
BmrFI	CCNGG	1 cut(s)	262
BmsI	GCATC	3 cut(s)	163, 520, 673
BpuMI	CCSGG	1 cut(s)	262
BsaAI	YACGTR	2 cut(s)	443, 606
BsaJI	CCNNGG	2 cut(s)	211, 261
BsaWI	WCCGGW	2 cut(s)	66, 424
BsaXI	ACNNNNNCTCC	2 cut(s)	644, 674
Bsc4I	CCNNNNNNNGG	4 cut(s)	73, 404, 475, 550
Bse118I	RCCGGY	1 cut(s)	66
Bse1I	ACTGG	1 cut(s)	385
BseDI	CCNNGG	2 cut(s)	211, 261
BseGI	GGATG	2 cut(s)	178, 370
BseLI	CCNNNNNNNGG	4 cut(s)	73, 404, 475, 550
BseNI	ACTGG	1 cut(s)	385
BseRI	GAGGAG	1 cut(s)	819
BseSI	GKGCMC	2 cut(s)	346, 707
BseXI	GCAGC	6 cut(s)	184, 520, 587, 721, 724, 781
BseYI	CCCAGC	3 cut(s)	254, 337, 850
Bsh1236I	CGCG	2 cut(s)	110, 213
BshFI	GGCC	2 cut(s)	60, 91
BshNI	GGYRCC	1 cut(s)	215
BshTI	ACCGGT	1 cut(s)	66
BsiHKAI	GWGCWC	1 cut(s)	346
BsiHKCI	CYCGRG	3 cut(s)	149, 180, 201
BsiSI	CCGG	4 cut(s)	67, 82, 261, 425
BslFI	GGGAC	2 cut(s)	166, 430
BslI	CCNNNNNNNGG	4 cut(s)	73, 404, 475, 550
BsmFI	GGGAC	2 cut(s)	166, 430
BsnI	GGCC	2 cut(s)	60, 91
BsoBI	CYCGRG	3 cut(s)	149, 180, 201
Bsp1286I	GDGCHC	3 cut(s)	288, 346, 707
Bsp143I	GATC	3 cut(s)	114, 763, 823
BspANI	GGCC	2 cut(s)	60, 91
BspFNI	CGCG	2 cut(s)	110, 213
BspLI	GGNNCC	6 cut(s)	217, 259, 285, 483, 654, 825
BspPI	GGATC	2 cut(s)	818, 831
BspT107I	GGYRCC	1 cut(s)	215
BsrBI	CCGCTC	1 cut(s)	179
BsrFI	RCCGGY	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	385
BssAI	RCCGGY	1 cut(s)	66
BssECI	CCNNGG	2 cut(s)	211, 261
BssMI	GATC	3 cut(s)	114, 763, 823
Bst4CI	ACNGT	2 cut(s)	785, 791
BstAPI	GCANNNNNTGC	1 cut(s)	778
BstBAI	YACGTR	2 cut(s)	443, 606
BstC8I	GCNNGC	3 cut(s)	673, 703, 707
BstDSI	CCRYGG	1 cut(s)	211
BstF5I	GGATG	2 cut(s)	178, 370
BstFNI	CGCG	2 cut(s)	110, 213
BstH2I	RGCGCY	1 cut(s)	209
BstHHI	GCGC	1 cut(s)	208
BstKTI	GATC	3 cut(s)	117, 766, 826
BstMBI	GATC	3 cut(s)	114, 763, 823
BstMWI	GCNNNNNNNGC	6 cut(s)	173, 182, 203, 350, 661, 778
BstNSI	RCATGY	1 cut(s)	625
BstSCI	CCNGG	1 cut(s)	260
BstSFI	CTRYAG	1 cut(s)	128
BstSLI	GKGCMC	2 cut(s)	346, 707
BstUI	CGCG	2 cut(s)	110, 213
BstV1I	GCAGC	6 cut(s)	184, 520, 587, 721, 724, 781
BstX2I	RGATCY	1 cut(s)	823
BstYI	RGATCY	1 cut(s)	823
BsuRI	GGCC	2 cut(s)	60, 91
BtgI	CCRYGG	1 cut(s)	211
BtgZI	GCGATG	1 cut(s)	696
BtsCI	GGATG	2 cut(s)	178, 370
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	3 cut(s)	162, 509, 781
Cac8I	GCNNGC	3 cut(s)	673, 703, 707
CaiI	CAGNNNCTG	1 cut(s)	715
CfoI	GCGC	1 cut(s)	208
Cfr10I	RCCGGY	1 cut(s)	66
Cfr13I	GGNCC	4 cut(s)	258, 481, 558, 600
Cfr42I	CCGCGG	1 cut(s)	214
Csp6I	GTAC	2 cut(s)	386, 632
CspAI	ACCGGT	1 cut(s)	66
CviAII	CATG	2 cut(s)	550, 622
CviQI	GTAC	2 cut(s)	386, 632
DpnI	GATC	3 cut(s)	116, 765, 825
DpnII	GATC	3 cut(s)	114, 763, 823
DraIII	CACNNNGTG	1 cut(s)	251
Eco24I	GRGCYC	1 cut(s)	288
Eco47I	GGWCC	4 cut(s)	258, 481, 558, 600
Eco47III	AGCGCT	1 cut(s)	207
Eco72I	CACGTG	1 cut(s)	606
Eco88I	CYCGRG	3 cut(s)	149, 180, 201
EcoO109I	RGGNCCY	1 cut(s)	481
EcoT38I	GRGCYC	1 cut(s)	288
FaeI	CATG	2 cut(s)	553, 625
FaiI	YATR	9 cut(s)	187, 189, 551, 580, 582, 623, 630, 650, 837
FaqI	GGGAC	2 cut(s)	166, 430
FatI	CATG	2 cut(s)	549, 621
FauI	CCCGC	4 cut(s)	3, 448, 477, 694
FauNDI	CATATG	2 cut(s)	187, 580
FblI	GTMKAC	2 cut(s)	50, 439
Fnu4HI	GCNGC	8 cut(s)	177, 198, 509, 576, 699, 710, 713, 770
FokI	GGATG	2 cut(s)	185, 377
FriOI	GRGCYC	1 cut(s)	288
Fsp4HI	GCNGC	8 cut(s)	177, 198, 509, 576, 699, 710, 713, 770
FspBI	CTAG	1 cut(s)	411
GlaI	GCGC	1 cut(s)	207
GluI	GCNGC	8 cut(s)	177, 198, 509, 576, 699, 710, 713, 770
GsaI	CCCAGC	3 cut(s)	258, 341, 854
HaeII	RGCGCY	1 cut(s)	209
HaeIII	GGCC	2 cut(s)	60, 91
HapII	CCGG	4 cut(s)	67, 82, 261, 425
HhaI	GCGC	1 cut(s)	208
Hin1II	CATG	2 cut(s)	553, 625
Hin6I	GCGC	1 cut(s)	206
HinP1I	GCGC	1 cut(s)	206
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HinfI	GANTC	5 cut(s)	78, 122, 428, 459, 568
HpaII	CCGG	4 cut(s)	67, 82, 261, 425
HphI	GGTGA	1 cut(s)	512
Hpy166II	GTNNAC	7 cut(s)	51, 344, 440, 466, 520, 558, 603
Hpy188I	TCNGA	1 cut(s)	763
Hpy188III	TCNNGA	2 cut(s)	151, 463
Hpy8I	GTNNAC	7 cut(s)	51, 344, 440, 466, 520, 558, 603
Hpy99I	CGWCG	2 cut(s)	26, 55
HpyCH4III	ACNGT	2 cut(s)	785, 791
HpyCH4IV	ACGT	2 cut(s)	442, 605
HpyCH4V	TGCA	4 cut(s)	344, 361, 671, 781
HpyF10VI	GCNNNNNNNGC	6 cut(s)	173, 182, 203, 350, 661, 778
HpySE526I	ACGT	2 cut(s)	442, 605
Hsp92II	CATG	2 cut(s)	553, 625
HspAI	GCGC	1 cut(s)	206
KspI	CCGCGG	1 cut(s)	214
Kzo9I	GATC	3 cut(s)	114, 763, 823
LmnI	GCTCC	4 cut(s)	213, 283, 652, 806
Lsp1109I	GCAGC	6 cut(s)	184, 520, 587, 721, 724, 781
LweI	GCATC	3 cut(s)	163, 520, 673
MaeI	CTAG	1 cut(s)	411
MaeII	ACGT	2 cut(s)	442, 605
MaeIII	GTNAC	2 cut(s)	717, 785
MalI	GATC	3 cut(s)	116, 765, 825
MbiI	CCGCTC	1 cut(s)	179
MboI	GATC	3 cut(s)	114, 763, 823
MboII	GAAGA	2 cut(s)	52, 55
MfeI	CAATTG	3 cut(s)	486, 666, 796
MflI	RGATCY	1 cut(s)	823
MhlI	GDGCHC	3 cut(s)	288, 346, 707
MluCI	AATT	6 cut(s)	232, 276, 486, 595, 666, 796
MlyI	GAGTC	4 cut(s)	87, 116, 437, 577
MmeI	TCCRAC	1 cut(s)	554
MseI	TTAA	1 cut(s)	348
MspA1I	CMGCKG	2 cut(s)	213, 715
MspI	CCGG	4 cut(s)	67, 82, 261, 425
MspR9I	CCNGG	1 cut(s)	262
MunI	CAATTG	3 cut(s)	486, 666, 796
MvnI	CGCG	2 cut(s)	110, 213
MwoI	GCNNNNNNNGC	6 cut(s)	173, 182, 203, 350, 661, 778
NciI	CCSGG	1 cut(s)	262
NdeI	CATATG	2 cut(s)	187, 580
NdeII	GATC	3 cut(s)	114, 763, 823
NlaIII	CATG	2 cut(s)	553, 625
NlaIV	GGNNCC	6 cut(s)	217, 259, 285, 483, 654, 825
NmuCI	GTSAC	2 cut(s)	717, 785
NspI	RCATGY	1 cut(s)	625
PaeR7I	CTCGAG	1 cut(s)	201
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	459
PinAI	ACCGGT	1 cut(s)	66
PkrI	GCNGC	8 cut(s)	178, 199, 510, 577, 700, 711, 714, 771
PleI	GAGTC	4 cut(s)	86, 116, 436, 576
PmaCI	CACGTG	1 cut(s)	606
PmlI	CACGTG	1 cut(s)	606
PpsI	GAGTC	4 cut(s)	86, 116, 436, 576
Ppu21I	YACGTR	2 cut(s)	443, 606
PpuMI	RGGWCCY	1 cut(s)	481
Psp5II	RGGWCCY	1 cut(s)	481
PspCI	CACGTG	1 cut(s)	606
PspFI	CCCAGC	3 cut(s)	254, 337, 850
PspN4I	GGNNCC	6 cut(s)	217, 259, 285, 483, 654, 825
PspPI	GGNCC	4 cut(s)	258, 481, 558, 600
PspPPI	RGGWCCY	1 cut(s)	481
PspXI	VCTCGAGB	1 cut(s)	201
PstNI	CAGNNNCTG	1 cut(s)	715
PsuI	RGATCY	1 cut(s)	823
PvuII	CAGCTG	1 cut(s)	715
RsaI	GTAC	2 cut(s)	387, 633
RsaNI	GTAC	2 cut(s)	386, 632
SacII	CCGCGG	1 cut(s)	214
SalI	GTCGAC	1 cut(s)	49
SaqAI	TTAA	1 cut(s)	348
SatI	GCNGC	8 cut(s)	177, 198, 509, 576, 699, 710, 713, 770
Sau3AI	GATC	3 cut(s)	114, 763, 823
Sau96I	GGNCC	4 cut(s)	258, 481, 558, 600
SchI	GAGTC	4 cut(s)	87, 116, 437, 577
ScrFI	CCNGG	1 cut(s)	262
SduI	GDGCHC	3 cut(s)	288, 346, 707
SetI	ASST	7 cut(s)	243, 328, 445, 519, 608, 717, 811
SfaNI	GCATC	3 cut(s)	163, 520, 673
SfcI	CTRYAG	1 cut(s)	128
Sfr274I	CTCGAG	1 cut(s)	201
Sfr303I	CCGCGG	1 cut(s)	214
SgrBI	CCGCGG	1 cut(s)	214
SinI	GGWCC	4 cut(s)	258, 481, 558, 600
SlaI	CTCGAG	1 cut(s)	201
SmlI	CTYRAG	1 cut(s)	201
SmoI	CTYRAG	1 cut(s)	201
SpeI	ACTAGT	1 cut(s)	410
Sse9I	AATT	6 cut(s)	232, 276, 486, 595, 666, 796
SspMI	CTAG	1 cut(s)	411
StyD4I	CCNGG	1 cut(s)	260
TaaI	ACNGT	2 cut(s)	785, 791
TaiI	ACGT	2 cut(s)	445, 608
TaqI	TCGA	4 cut(s)	50, 159, 202, 611
TasI	AATT	6 cut(s)	232, 276, 486, 595, 666, 796
TauI	GCSGC	2 cut(s)	179, 701
TfiI	GAWTC	1 cut(s)	459
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TscAI	CASTG	3 cut(s)	169, 509, 788
TseFI	GTSAC	2 cut(s)	717, 785
TseI	GCWGC	6 cut(s)	197, 508, 575, 709, 712, 769
Tsp45I	GTSAC	2 cut(s)	717, 785
TspGWI	ACGGA	1 cut(s)	648
TspRI	CASTG	3 cut(s)	169, 509, 788
VneI	GTGCAC	1 cut(s)	342
VpaK11BI	GGWCC	4 cut(s)	258, 481, 558, 600
XceI	RCATGY	1 cut(s)	625
XcmI	CCANNNNNNNNNTGG	1 cut(s)	552
XhoI	CTCGAG	1 cut(s)	201
XmiI	GTMKAC	2 cut(s)	50, 439
XspI	CTAG	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.