Prupe.5G136200_v2.0.a1

transcription factor

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
12902410 .. 12903348
939 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G136200.1

Sequence Viewer

Length: 939 bp
ATGGGTTTGCGCGCACAAAACGACGGCGTCCGGGGCAGGAGGAAATCATCGACGAGAGGCCACCACAGGTTCGTGGGCGTTCGACAGAGGCCATCGGGGAGATGGGTCGCCGAGATTAAGGACTCTCTGCAAAAGGTGAGGCTTTGGCTCGGGACGTTCGACACAGCGGAGGACGCCGCTCGAGCCTACGACGACGCGGCTCGAGCGCTGCGCGGTGCGAACGCCCGAACCAACTTCGAATTGCCCCAATCGACCAATGAGTCCGGCCATGCCAATGGCGGTGCCGGCGTGGCCGAAAATGTGGAGCCATTTTCGTTTGAGGCTGTATGTGGAAATGGGGCTGAAGCCGATGGGTTGCTTGGCGCGCTCAGGGCTAAGCTGCTCGACGGCAAAGGGTGTGTGGTTCCGCAACCACAGGGGAATAATGGTGGTGCCAAGATGGAGCCGTTTCCTATTGGTCCACGTGGCGTGGTGGGTTTTGTGAACCCGAACCCGCCTCCTTCTTCATCCGGGTCGGCGAAGGAGGATCCCATTGTGTTAGATATTAACGGTCATGATCATCGGTGGGGTCATCATCAAGCTCAGCCTAGTCACACAGCATCAAACCAGAGCATGGCTTGGAGCAATGAGTCCCCAGCATTAGCATATGACCAAGTGCCGAATTGGTCAACATGGTCAACGCAAACTGGTTCATTTACAGAGCAGTGCCCTATGGAGCTGCCATCGCAGATCACAAGCCTTGCTAGGGATGGTAAAGTGACAGCGTTGAGCACACAGCAGCTGTCACAGATTGATGGGTCAGCAATTTTGGGGTCATCAGCTTCAGGTGCTTGGCCTTCAGACCAGCAGCAGTTTTTACACTGTGACAACAATTGGGCGGCAGGTGGTGCAAATGCTTCTTGGGACCCACTCTTCTATGCATCCTCTGTTCTGGGGTGA

Protein Analysis

313

Amino Acids

33.15

Weight (kDa)

6.13

Isoelectric Point (pI)

42.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 872
AasI GACNNNNNNGTC 1 cut(s) 259
Acc36I ACCTGC 1 cut(s) 872
AccB1I GGYRCC 2 cut(s) 281, 431
AccB7I CCANNNNNTGG 1 cut(s) 613
AccBSI CCGCTC 1 cut(s) 179
AccII CGCG 4 cut(s) 12, 197, 213, 365
AciI CCGC 8 cut(s) 167, 177, 197, 213, 279, 407, 494, 878
AclWI GGATC 2 cut(s) 521, 534
AcoI YGGCCR 2 cut(s) 265, 291
AcuI CTGAAG 3 cut(s) 363, 807, 822
AcvI CACGTG 1 cut(s) 464
AcyI GRCGYC 2 cut(s) 27, 174
AfeI AGCGCT 1 cut(s) 207
AfiI CCNNNNNNNGG 2 cut(s) 613, 745
AluBI AGCT 5 cut(s) 379, 581, 718, 781, 821
AluI AGCT 5 cut(s) 379, 581, 718, 781, 821
Alw21I GWGCWC 1 cut(s) 773
AlwI GGATC 2 cut(s) 521, 534
AlwNI CAGNNNCTG 1 cut(s) 781
Ama87I CYCGRG 3 cut(s) 149, 180, 201
Aor51HI AGCGCT 1 cut(s) 207
AoxI GGCC 5 cut(s) 58, 89, 265, 291, 833
ApeKI GCWGC 5 cut(s) 208, 379, 718, 778, 847
AspLEI GCGC 6 cut(s) 12, 14, 208, 213, 365, 367
AspS9I GGNCC 2 cut(s) 458, 904
AsuC2I CCSGG 2 cut(s) 32, 511
AsuHPI GGTGA 1 cut(s) 148
AsuII TTCGAA 1 cut(s) 237
AvaI CYCGRG 3 cut(s) 149, 180, 201
AvaII GGWCC 2 cut(s) 458, 904
BaeGI GKGCMC 1 cut(s) 710
BamHI GGATCC 1 cut(s) 526
BanI GGYRCC 2 cut(s) 281, 431
BbrPI CACGTG 1 cut(s) 464
Bbv12I GWGCWC 1 cut(s) 773
BbvI GCAGC 5 cut(s) 195, 366, 705, 790, 859
BccI CCATC 7 cut(s) 96, 100, 344, 433, 730, 743, 788
BceAI ACGGC 3 cut(s) 40, 403, 430
BclI TGATCA 1 cut(s) 556
BcnI CCSGG 2 cut(s) 32, 511
BfaI CTAG 2 cut(s) 588, 744
BfoI RGCGCY 1 cut(s) 209
BfuAI ACCTGC 1 cut(s) 872
BglI GCCNNNNNGGC 1 cut(s) 290
BisI GCNGC 8 cut(s) 177, 198, 209, 380, 719, 779, 848, 879
BlpI GCTNAGC 2 cut(s) 375, 582
BlsI GCNGC 8 cut(s) 178, 199, 210, 381, 720, 780, 849, 880
Bme1390I CCNGG 2 cut(s) 32, 511
Bme18I GGWCC 2 cut(s) 458, 904
BmeT110I CYCGRG 3 cut(s) 149, 180, 201
BmgT120I GGNCC 2 cut(s) 458, 904
BmiI GGNNCC 8 cut(s) 283, 306, 405, 433, 444, 528, 905, 906
BmrFI CCNGG 2 cut(s) 32, 511
BmsI GCATC 2 cut(s) 608, 929
Bpu10I CCTNAGC 1 cut(s) 368
Bpu1102I GCTNAGC 2 cut(s) 375, 582
Bpu14I TTCGAA 1 cut(s) 237
BpuMI CCSGG 2 cut(s) 32, 511
BsaAI YACGTR 1 cut(s) 464
BsaHI GRCGYC 2 cut(s) 27, 174
BsaJI CCNNGG 1 cut(s) 31
Bsc4I CCNNNNNNNGG 2 cut(s) 613, 745
Bse118I RCCGGY 1 cut(s) 284
Bse1I ACTGG 1 cut(s) 691
Bse3DI GCAATG 1 cut(s) 631
BseDI CCNNGG 1 cut(s) 31
BseGI GGATG 3 cut(s) 506, 754, 920
BseLI CCNNNNNNNGG 2 cut(s) 613, 745
BseMI GCAATG 1 cut(s) 631
BseMII CTCAG 2 cut(s) 382, 596
BseNI ACTGG 1 cut(s) 691
BsePI GCGCGC 2 cut(s) 10, 363
BseSI GKGCMC 1 cut(s) 710
BseXI GCAGC 5 cut(s) 195, 366, 705, 790, 859
BseYI CCCAGC 1 cut(s) 634
Bsh1236I CGCG 4 cut(s) 12, 197, 213, 365
BshFI GGCC 5 cut(s) 60, 91, 267, 293, 835
BshNI GGYRCC 2 cut(s) 281, 431
BsiHKAI GWGCWC 1 cut(s) 773
BsiHKCI CYCGRG 3 cut(s) 149, 180, 201
BsiSI CCGG 4 cut(s) 31, 264, 285, 510
BslFI GGGAC 3 cut(s) 166, 616, 917
BslI CCNNNNNNNGG 2 cut(s) 613, 745
BsmFI GGGAC 3 cut(s) 166, 616, 917
BsnI GGCC 5 cut(s) 60, 91, 267, 293, 835
BsoBI CYCGRG 3 cut(s) 149, 180, 201
Bsp119I TTCGAA 1 cut(s) 237
Bsp1286I GDGCHC 2 cut(s) 710, 773
Bsp143I GATC 3 cut(s) 526, 556, 729
Bsp1720I GCTNAGC 2 cut(s) 375, 582
BspACI CCGC 8 cut(s) 167, 177, 197, 213, 279, 407, 494, 878
BspANI GGCC 5 cut(s) 60, 91, 267, 293, 835
BspCNI CTCAG 2 cut(s) 381, 595
BspFNI CGCG 4 cut(s) 12, 197, 213, 365
BspHI TCATGA 1 cut(s) 553
BspLI GGNNCC 8 cut(s) 283, 306, 405, 433, 444, 528, 905, 906
BspMI ACCTGC 1 cut(s) 872
BspPI GGATC 2 cut(s) 521, 534
BspT104I TTCGAA 1 cut(s) 237
BspT107I GGYRCC 2 cut(s) 281, 431
BsrBI CCGCTC 1 cut(s) 179
BsrDI GCAATG 1 cut(s) 631
BsrFI RCCGGY 1 cut(s) 284
BsrI ACTGG 1 cut(s) 691
BssAI RCCGGY 1 cut(s) 284
BssECI CCNNGG 1 cut(s) 31
BssHII GCGCGC 2 cut(s) 10, 363
BssMI GATC 3 cut(s) 526, 556, 729
BssNI GRCGYC 2 cut(s) 27, 174
Bst4CI ACNGT 2 cut(s) 551, 863
Bst6I CTCTTC 1 cut(s) 917
BstACI GRCGYC 2 cut(s) 27, 174
BstAPI GCANNNNNTGC 1 cut(s) 887
BstBAI YACGTR 1 cut(s) 464
BstBI TTCGAA 1 cut(s) 237
BstC8I GCNNGC 3 cut(s) 12, 286, 365
BstDEI CTNAG 3 cut(s) 368, 375, 582
BstF5I GGATG 3 cut(s) 506, 754, 920
BstFNI CGCG 4 cut(s) 12, 197, 213, 365
BstH2I RGCGCY 1 cut(s) 209
BstHHI GCGC 6 cut(s) 12, 14, 208, 213, 365, 367
BstKTI GATC 3 cut(s) 529, 559, 732
BstMBI GATC 3 cut(s) 526, 556, 729
BstSCI CCNGG 2 cut(s) 30, 509
BstSLI GKGCMC 1 cut(s) 710
BstUI CGCG 4 cut(s) 12, 197, 213, 365
BstV1I GCAGC 5 cut(s) 195, 366, 705, 790, 859
BstX2I RGATCY 1 cut(s) 526
BstXI CCANNNNNNTGG 1 cut(s) 275
BstYI RGATCY 1 cut(s) 526
BsuRI GGCC 5 cut(s) 60, 91, 267, 293, 835
BtgZI GCGATG 1 cut(s) 708
BtsCI GGATG 3 cut(s) 506, 754, 920
BtsI GCAGTG 1 cut(s) 710
BtsIMutI CAGTG 2 cut(s) 710, 859
BveI ACCTGC 1 cut(s) 872
Cac8I GCNNGC 3 cut(s) 12, 286, 365
CaiI CAGNNNCTG 1 cut(s) 781
CciI TCATGA 1 cut(s) 553
CfoI GCGC 6 cut(s) 12, 14, 208, 213, 365, 367
Cfr10I RCCGGY 1 cut(s) 284
Cfr13I GGNCC 2 cut(s) 458, 904
CseI GACGC 3 cut(s) 16, 182, 203
CviAII CATG 4 cut(s) 269, 554, 613, 672
DdeI CTNAG 3 cut(s) 368, 375, 582
DpnI GATC 3 cut(s) 528, 558, 731
DpnII GATC 3 cut(s) 526, 556, 729
DrdI GACNNNNNNGTC 1 cut(s) 259
DseDI GACNNNNNNGTC 1 cut(s) 259
EaeI YGGCCR 2 cut(s) 265, 291
Eam1104I CTCTTC 1 cut(s) 917
EarI CTCTTC 1 cut(s) 917
Eco47I GGWCC 2 cut(s) 458, 904
Eco47III AGCGCT 1 cut(s) 207
Eco57I CTGAAG 3 cut(s) 363, 807, 822
Eco72I CACGTG 1 cut(s) 464
Eco88I CYCGRG 3 cut(s) 149, 180, 201
EcoO109I RGGNCCY 1 cut(s) 904
EcoT22I ATGCAT 1 cut(s) 922
FaeI CATG 4 cut(s) 272, 557, 616, 675
FaiI YATR 9 cut(s) 270, 328, 555, 614, 646, 648, 673, 713, 918
FaqI GGGAC 3 cut(s) 166, 616, 917
FatI CATG 4 cut(s) 268, 553, 612, 671
FauI CCCGC 1 cut(s) 501
FauNDI CATATG 1 cut(s) 646
FbaI TGATCA 1 cut(s) 556
Fnu4HI GCNGC 8 cut(s) 177, 198, 209, 380, 719, 779, 848, 879
FokI GGATG 3 cut(s) 493, 761, 907
Fsp4HI GCNGC 8 cut(s) 177, 198, 209, 380, 719, 779, 848, 879
FspBI CTAG 2 cut(s) 588, 744
GlaI GCGC 6 cut(s) 11, 13, 207, 212, 364, 366
GluI GCNGC 8 cut(s) 177, 198, 209, 380, 719, 779, 848, 879
GsaI CCCAGC 1 cut(s) 638
HaeII RGCGCY 1 cut(s) 209
HaeIII GGCC 5 cut(s) 60, 91, 267, 293, 835
HapII CCGG 4 cut(s) 31, 264, 285, 510
HgaI GACGC 3 cut(s) 16, 182, 203
HhaI GCGC 6 cut(s) 12, 14, 208, 213, 365, 367
Hin1I GRCGYC 2 cut(s) 27, 174
Hin1II CATG 4 cut(s) 272, 557, 616, 675
Hin6I GCGC 6 cut(s) 10, 12, 206, 211, 363, 365
HinP1I GCGC 6 cut(s) 10, 12, 206, 211, 363, 365
HincII GTYRAC 2 cut(s) 669, 678
HindII GTYRAC 2 cut(s) 669, 678
HinfI GANTC 3 cut(s) 122, 260, 629
HpaII CCGG 4 cut(s) 31, 264, 285, 510
HphI GGTGA 1 cut(s) 148
Hpy166II GTNNAC 4 cut(s) 461, 484, 669, 678
Hpy188I TCNGA 1 cut(s) 841
Hpy188III TCNNGA 2 cut(s) 151, 554
Hpy8I GTNNAC 4 cut(s) 461, 484, 669, 678
Hpy99I CGWCG 5 cut(s) 26, 55, 194, 197, 389
HpyAV CCTTC 3 cut(s) 510, 514, 846
HpyCH4III ACNGT 2 cut(s) 551, 863
HpyCH4IV ACGT 2 cut(s) 155, 463
HpyCH4V TGCA 3 cut(s) 130, 890, 920
HpyF3I CTNAG 3 cut(s) 368, 375, 582
HpySE526I ACGT 2 cut(s) 155, 463
Hsp92I GRCGYC 2 cut(s) 27, 174
Hsp92II CATG 4 cut(s) 272, 557, 616, 675
HspAI GCGC 6 cut(s) 10, 12, 206, 211, 363, 365
KflI GGGWCCC 1 cut(s) 904
KroI GCCGGC 1 cut(s) 284
KroNI GCCGGC 1 cut(s) 286
Ksp22I TGATCA 1 cut(s) 556
Kzo9I GATC 3 cut(s) 526, 556, 729
LmnI GCTCC 4 cut(s) 304, 442, 621, 715
Lsp1109I GCAGC 5 cut(s) 195, 366, 705, 790, 859
LweI GCATC 2 cut(s) 608, 929
MaeI CTAG 2 cut(s) 588, 744
MaeII ACGT 2 cut(s) 155, 463
MaeIII GTNAC 4 cut(s) 590, 757, 783, 863
MalI GATC 3 cut(s) 528, 558, 731
MbiI CCGCTC 1 cut(s) 179
MboI GATC 3 cut(s) 526, 556, 729
MboII GAAGA 2 cut(s) 495, 904
MfeI CAATTG 1 cut(s) 871
MflI RGATCY 1 cut(s) 526
MhlI GDGCHC 2 cut(s) 710, 773
MluCI AATT 4 cut(s) 239, 661, 804, 871
MlyI GAGTC 3 cut(s) 116, 269, 638
MnlI CCTC 9 cut(s) 33, 50, 81, 132, 163, 313, 507, 517, 934
Mph1103I ATGCAT 1 cut(s) 922
MroNI GCCGGC 1 cut(s) 284
MseI TTAA 2 cut(s) 117, 546
MslI CAYNNNNRTG 1 cut(s) 273
MspA1I CMGCKG 2 cut(s) 167, 781
MspI CCGG 4 cut(s) 31, 264, 285, 510
MspR9I CCNGG 2 cut(s) 32, 511
MteI GCGCNGCGC 1 cut(s) 209
MunI CAATTG 1 cut(s) 871
MvnI CGCG 4 cut(s) 12, 197, 213, 365
NaeI GCCGGC 1 cut(s) 286
NciI CCSGG 2 cut(s) 32, 511
NdeI CATATG 1 cut(s) 646
NdeII GATC 3 cut(s) 526, 556, 729
NgoMIV GCCGGC 1 cut(s) 284
NlaIII CATG 4 cut(s) 272, 557, 616, 675
NlaIV GGNNCC 8 cut(s) 283, 306, 405, 433, 444, 528, 905, 906
NmeAIII GCCGAG 1 cut(s) 136
NmuCI GTSAC 4 cut(s) 590, 757, 783, 863
NsiI ATGCAT 1 cut(s) 922
NspV TTCGAA 1 cut(s) 237
PaeR7I CTCGAG 2 cut(s) 180, 201
PagI TCATGA 1 cut(s) 553
PaqCI CACCTGC 1 cut(s) 872
PauI GCGCGC 2 cut(s) 10, 363
PcsI WCGNNNNNNNCGW 1 cut(s) 156
PdiI GCCGGC 1 cut(s) 286
PflFI GACNNNGTC 1 cut(s) 26
PflMI CCANNNNNTGG 1 cut(s) 613
PkrI GCNGC 8 cut(s) 178, 199, 210, 381, 720, 780, 849, 880
PleI GAGTC 3 cut(s) 116, 268, 637
PmaCI CACGTG 1 cut(s) 464
PmlI CACGTG 1 cut(s) 464
PpsI GAGTC 3 cut(s) 116, 268, 637
Ppu21I YACGTR 1 cut(s) 464
PpuMI RGGWCCY 1 cut(s) 904
Psp5II RGGWCCY 1 cut(s) 904
PspCI CACGTG 1 cut(s) 464
PspFI CCCAGC 1 cut(s) 634
PspN4I GGNNCC 8 cut(s) 283, 306, 405, 433, 444, 528, 905, 906
PspPI GGNCC 2 cut(s) 458, 904
PspPPI RGGWCCY 1 cut(s) 904
PspXI VCTCGAGB 2 cut(s) 180, 201
PstNI CAGNNNCTG 1 cut(s) 781
PsuI RGATCY 1 cut(s) 526
PsyI GACNNNGTC 1 cut(s) 26
PteI GCGCGC 2 cut(s) 10, 363
PvuII CAGCTG 1 cut(s) 781
RseI CAYNNNNRTG 1 cut(s) 273
SaqAI TTAA 2 cut(s) 117, 546
SatI GCNGC 8 cut(s) 177, 198, 209, 380, 719, 779, 848, 879
Sau3AI GATC 3 cut(s) 526, 556, 729
Sau96I GGNCC 2 cut(s) 458, 904
SchI GAGTC 3 cut(s) 116, 269, 638
ScrFI CCNGG 2 cut(s) 32, 511
SduI GDGCHC 2 cut(s) 710, 773
SfaNI GCATC 2 cut(s) 608, 929
Sfr274I CTCGAG 2 cut(s) 180, 201
SfuI TTCGAA 1 cut(s) 237
SinI GGWCC 2 cut(s) 458, 904
SlaI CTCGAG 2 cut(s) 180, 201
SmiMI CAYNNNNRTG 1 cut(s) 273
SmlI CTYRAG 2 cut(s) 180, 201
SmoI CTYRAG 2 cut(s) 180, 201
Sse9I AATT 4 cut(s) 239, 661, 804, 871
SsiI CCGC 8 cut(s) 167, 177, 197, 213, 279, 407, 494, 878
SspMI CTAG 2 cut(s) 588, 744
StyD4I CCNGG 2 cut(s) 30, 509
TaaI ACNGT 2 cut(s) 551, 863
TaiI ACGT 2 cut(s) 158, 466
TaqI TCGA 8 cut(s) 50, 82, 159, 181, 202, 237, 251, 384
TasI AATT 4 cut(s) 239, 661, 804, 871
TauI GCSGC 3 cut(s) 179, 200, 881
Tru1I TTAA 2 cut(s) 117, 546
Tru9I TTAA 2 cut(s) 117, 546
TscAI CASTG 2 cut(s) 710, 866
TseFI GTSAC 4 cut(s) 590, 757, 783, 863
TseI GCWGC 5 cut(s) 208, 379, 718, 778, 847
Tsp45I GTSAC 4 cut(s) 590, 757, 783, 863
TspDTI ATGAA 2 cut(s) 495, 681
TspRI CASTG 2 cut(s) 710, 866
Tth111I GACNNNGTC 1 cut(s) 26
Van91I CCANNNNNTGG 1 cut(s) 613
VpaK11BI GGWCC 2 cut(s) 458, 904
XcmI CCANNNNNNNNNTGG 1 cut(s) 99
XhoI CTCGAG 2 cut(s) 180, 201
XspI CTAG 2 cut(s) 588, 744
Zsp2I ATGCAT 1 cut(s) 922
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.