Rw7G007840

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0013672
Physical Location & Seq
Reverse (-)
7175477 .. 7176918
1442 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G007840.1

Sequence Viewer

Length: 978 bp
ATGGCAGCTGTACGAGCTCAAAACGATGGCGTCCGCGGCCGGAGGAAGTCATCGTCGAGAGGGCACCATAGATTTGTGGGAGTGAGGCAGAGGCCGTCGGGAAGATGGGTGGCCGAGATCAAAGACTCGTTGCAAAAGGTCAGGCTTTGGCTTGGCACTTTCGATACTGCTGAGGATGCTGCTAGGGCTTATGATGACGCTGCGCGGACTTTGCGCGGCGCAAATGCCCGCACCAATTTCGAACTGCCTCAATCGAATGGTGCGGGCGGGGGAGATTCGGGGATGGAAAATGTGGAACCGTTTTCGTTTGAGGATGTTTGTGGCAATGGAGCTGAAGAAGACGGCTTGCTTGGTGCGCTCAAGGCCAAGTTGCTTGATGGCAAGGGATTTAGTCGGGTGCAAGAGAAGATTGATCCGTCTCCTCTAGTTGTGCCACGTGGCGGTGGTTTTGGATTTGCAAACCCTCCGAATCAGGAGGGTTCATATATAGCAGGGTCCTCAAAGGAAAAAAAATTTAGTCACACTCGGTGTATACAACCTCCCTCTCACAAAAATGATCACGTGACAGGCCACGACGTGGTATTCCATATCAGTGACCAGACAGAGGTGGCCGTGTCCGGTCACGTTGCATCGAACTCGGGCATGGTGTGGACCAATGAACCTCCAGCATATGAAGTGACTTGGTCCAACACACTTCCTATGCCTACATGGCCGGTACCAACTGATCAGTCAATTGTGAGTATGTCATATACAGATCAGTGTTCGATGGAGTTGCCAACAACAAGTAGAGATCATGGTAAAGTGACCGCCGTAGGCGTGACGCAGCAGCTGTCACAGATCGAAGGAGCAATGGGAGGTGGTGCTTGGTCTGCAGATCAGCAATATATGCACTGTGACAACAATTGGGCAGCTGCTGCTAACGGCACTTGGGAATCCCAAGGCCTCTACTATCAGCCCTCTGTTTCTGGGGTGATTTGA

Protein Analysis

325

Amino Acids

35.05

Weight (kDa)

5.93

Isoelectric Point (pI)

43.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 24 - 73 1.5e-13 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 715
AccB1I GGYRCC 2 cut(s) 63, 715
AccB7I CCANNNNNTGG 1 cut(s) 577
AccI GTMKAC 1 cut(s) 532
AccII CGCG 3 cut(s) 36, 205, 216
AciI CCGC 9 cut(s) 34, 36, 205, 216, 229, 263, 267, 441, 807
AclWI GGATC 1 cut(s) 407
AcoI YGGCCR 4 cut(s) 37, 111, 609, 710
AcsI RAATTY 1 cut(s) 512
AcuI CTGAAG 1 cut(s) 354
AcvI CACGTG 2 cut(s) 437, 562
AcyI GRCGYC 1 cut(s) 30
AdeI CACNNNGTG 2 cut(s) 528, 577
AfaI GTAC 2 cut(s) 12, 717
AfiI CCNNNNNNNGG 3 cut(s) 440, 577, 604
AjiI CACGTC 1 cut(s) 577
AluBI AGCT 5 cut(s) 8, 17, 332, 829, 911
AluI AGCT 5 cut(s) 8, 17, 332, 829, 911
Alw21I GWGCWC 1 cut(s) 19
Alw26I GTCTC 1 cut(s) 423
AlwI GGATC 1 cut(s) 407
AlwNI CAGNNNCTG 2 cut(s) 829, 914
Ama87I CYCGRG 1 cut(s) 637
AoxI GGCC 8 cut(s) 37, 92, 111, 363, 568, 609, 710, 940
ApeKI GCWGC 8 cut(s) 5, 179, 200, 823, 826, 908, 911, 914
ApoI RAATTY 1 cut(s) 512
Asp718I GGTACC 1 cut(s) 715
AspLEI GCGC 4 cut(s) 205, 216, 221, 358
AspS9I GGNCC 3 cut(s) 495, 651, 684
AsuII TTCGAA 1 cut(s) 240
AvaI CYCGRG 1 cut(s) 637
AvaII GGWCC 3 cut(s) 495, 651, 684
BaeGI GKGCMC 1 cut(s) 66
BanI GGYRCC 2 cut(s) 63, 715
BanII GRGCYC 1 cut(s) 19
BbrPI CACGTG 2 cut(s) 437, 562
BbsI GAAGAC 1 cut(s) 345
Bbv12I GWGCWC 1 cut(s) 19
BbvCI CCTCAGC 1 cut(s) 171
BbvI GCAGC 8 cut(s) 17, 166, 187, 835, 838, 898, 901, 920
BccI CCATC 5 cut(s) 20, 99, 277, 371, 760
BceAI ACGGC 5 cut(s) 79, 358, 596, 794, 937
BcgI CGANNNNNNTGC 6 cut(s) 220, 254, 618, 652, 754, 788
BclI TGATCA 2 cut(s) 556, 724
BcoDI GTCTC 1 cut(s) 423
BfaI CTAG 2 cut(s) 183, 425
BfmI CTRYAG 1 cut(s) 870
BglI GCCNNNNNGGC 1 cut(s) 709
Bme18I GGWCC 3 cut(s) 495, 651, 684
BmeT110I CYCGRG 1 cut(s) 637
BmgBI CACGTC 1 cut(s) 577
BmgT120I GGNCC 3 cut(s) 495, 651, 684
BmiI GGNNCC 4 cut(s) 65, 297, 496, 717
BmsI GCATC 2 cut(s) 166, 638
BpiI GAAGAC 1 cut(s) 345
BpmI CTGGAG 1 cut(s) 648
Bpu10I CCTNAGC 1 cut(s) 171
Bpu14I TTCGAA 1 cut(s) 240
BpuEI CTTGAG 1 cut(s) 344
BsaAI YACGTR 2 cut(s) 437, 562
BsaHI GRCGYC 1 cut(s) 30
BsaJI CCNNGG 2 cut(s) 34, 937
BsaWI WCCGGW 1 cut(s) 617
Bsc4I CCNNNNNNNGG 3 cut(s) 440, 577, 604
Bse118I RCCGGY 1 cut(s) 712
Bse3DI GCAATG 2 cut(s) 331, 855
BseDI CCNNGG 2 cut(s) 34, 937
BseGI GGATG 3 cut(s) 181, 288, 319
BseLI CCNNNNNNNGG 3 cut(s) 440, 577, 604
BseMI GCAATG 2 cut(s) 331, 855
BseMII CTCAG 1 cut(s) 162
BseRI GAGGAG 1 cut(s) 411
BseSI GKGCMC 1 cut(s) 66
BseX3I CGGCCG 1 cut(s) 37
BseXI GCAGC 8 cut(s) 17, 166, 187, 835, 838, 898, 901, 920
Bsh1236I CGCG 3 cut(s) 36, 205, 216
Bsh1285I CGRYCG 1 cut(s) 40
BshFI GGCC 8 cut(s) 39, 94, 113, 365, 570, 611, 712, 942
BshNI GGYRCC 2 cut(s) 63, 715
BsiEI CGRYCG 1 cut(s) 40
BsiHKAI GWGCWC 1 cut(s) 19
BsiHKCI CYCGRG 1 cut(s) 637
BsiSI CCGG 3 cut(s) 40, 618, 713
BslI CCNNNNNNNGG 3 cut(s) 440, 577, 604
BsmAI GTCTC 1 cut(s) 423
BsmBI CGTCTC 1 cut(s) 423
BsnI GGCC 8 cut(s) 39, 94, 113, 365, 570, 611, 712, 942
BsoBI CYCGRG 1 cut(s) 637
Bsp119I TTCGAA 1 cut(s) 240
Bsp1286I GDGCHC 2 cut(s) 19, 66
Bsp143I GATC 8 cut(s) 117, 412, 556, 724, 754, 790, 837, 874
BspACI CCGC 9 cut(s) 34, 36, 205, 216, 229, 263, 267, 441, 807
BspANI GGCC 8 cut(s) 39, 94, 113, 365, 570, 611, 712, 942
BspCNI CTCAG 1 cut(s) 163
BspFNI CGCG 3 cut(s) 36, 205, 216
BspLI GGNNCC 4 cut(s) 65, 297, 496, 717
BspMAI CTGCAG 1 cut(s) 874
BspPI GGATC 1 cut(s) 407
BspT104I TTCGAA 1 cut(s) 240
BspT107I GGYRCC 2 cut(s) 63, 715
BsrDI GCAATG 2 cut(s) 331, 855
BsrFI RCCGGY 1 cut(s) 712
BssAI RCCGGY 1 cut(s) 712
BssECI CCNNGG 2 cut(s) 34, 937
BssMI GATC 8 cut(s) 117, 412, 556, 724, 754, 790, 837, 874
BssNAI GTATAC 1 cut(s) 533
BssNI GRCGYC 1 cut(s) 30
BssT1I CCWWGG 1 cut(s) 937
Bst1107I GTATAC 1 cut(s) 533
Bst4CI ACNGT 2 cut(s) 300, 893
BstACI GRCGYC 1 cut(s) 30
BstAPI GCANNNNNTGC 2 cut(s) 886, 914
BstBAI YACGTR 2 cut(s) 437, 562
BstBI TTCGAA 1 cut(s) 240
BstC8I GCNNGC 3 cut(s) 229, 265, 347
BstDEI CTNAG 1 cut(s) 171
BstDSI CCRYGG 1 cut(s) 34
BstF5I GGATG 3 cut(s) 181, 288, 319
BstFNI CGCG 3 cut(s) 36, 205, 216
BstHHI GCGC 4 cut(s) 205, 216, 221, 358
BstKTI GATC 8 cut(s) 120, 415, 559, 727, 757, 793, 840, 877
BstMAI GTCTC 1 cut(s) 423
BstMBI GATC 8 cut(s) 117, 412, 556, 724, 754, 790, 837, 874
BstMCI CGRYCG 1 cut(s) 40
BstSFI CTRYAG 1 cut(s) 870
BstSLI GKGCMC 1 cut(s) 66
BstUI CGCG 3 cut(s) 36, 205, 216
BstV1I GCAGC 8 cut(s) 17, 166, 187, 835, 838, 898, 901, 920
BstV2I GAAGAC 1 cut(s) 345
BstZ17I GTATAC 1 cut(s) 533
BstZI CGGCCG 1 cut(s) 37
BsuRI GGCC 8 cut(s) 39, 94, 113, 365, 570, 611, 712, 942
BtgI CCRYGG 1 cut(s) 34
BtrI CACGTC 1 cut(s) 577
BtsCI GGATG 3 cut(s) 181, 288, 319
BtsIMutI CAGTG 3 cut(s) 598, 764, 889
Cac8I GCNNGC 3 cut(s) 229, 265, 347
CaiI CAGNNNCTG 2 cut(s) 829, 914
CfoI GCGC 4 cut(s) 205, 216, 221, 358
Cfr10I RCCGGY 1 cut(s) 712
Cfr13I GGNCC 3 cut(s) 495, 651, 684
Cfr42I CCGCGG 1 cut(s) 37
CseI GACGC 3 cut(s) 19, 206, 829
Csp6I GTAC 2 cut(s) 11, 716
CviAII CATG 3 cut(s) 643, 708, 794
CviQI GTAC 2 cut(s) 11, 716
DdeI CTNAG 1 cut(s) 171
DpnI GATC 8 cut(s) 119, 414, 558, 726, 756, 792, 839, 876
DpnII GATC 8 cut(s) 117, 412, 556, 724, 754, 790, 837, 874
DraIII CACNNNGTG 2 cut(s) 528, 577
EaeI YGGCCR 4 cut(s) 37, 111, 609, 710
EagI CGGCCG 1 cut(s) 37
Ecl136II GAGCTC 1 cut(s) 17
EclXI CGGCCG 1 cut(s) 37
Eco130I CCWWGG 1 cut(s) 937
Eco147I AGGCCT 1 cut(s) 942
Eco24I GRGCYC 1 cut(s) 19
Eco47I GGWCC 3 cut(s) 495, 651, 684
Eco52I CGGCCG 1 cut(s) 37
Eco53kI GAGCTC 1 cut(s) 17
Eco57I CTGAAG 1 cut(s) 354
Eco72I CACGTG 2 cut(s) 437, 562
Eco88I CYCGRG 1 cut(s) 637
EcoICRI GAGCTC 1 cut(s) 17
EcoO109I RGGNCCY 1 cut(s) 495
EcoT14I CCWWGG 1 cut(s) 937
EcoT38I GRGCYC 1 cut(s) 19
ErhI CCWWGG 1 cut(s) 937
Esp3I CGTCTC 1 cut(s) 423
FaeI CATG 3 cut(s) 646, 711, 797
FatI CATG 3 cut(s) 642, 707, 793
FauI CCCGC 3 cut(s) 236, 256, 260
FauNDI CATATG 1 cut(s) 670
FbaI TGATCA 2 cut(s) 556, 724
FblI GTMKAC 1 cut(s) 532
FokI GGATG 3 cut(s) 188, 295, 326
FriOI GRGCYC 1 cut(s) 19
FspBI CTAG 2 cut(s) 183, 425
GlaI GCGC 4 cut(s) 204, 215, 220, 357
GsuI CTGGAG 1 cut(s) 648
HaeIII GGCC 8 cut(s) 39, 94, 113, 365, 570, 611, 712, 942
HapII CCGG 3 cut(s) 40, 618, 713
HgaI GACGC 3 cut(s) 19, 206, 829
HhaI GCGC 4 cut(s) 205, 216, 221, 358
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 3 cut(s) 646, 711, 797
Hin6I GCGC 4 cut(s) 203, 214, 219, 356
HinP1I GCGC 4 cut(s) 203, 214, 219, 356
HinfI GANTC 4 cut(s) 125, 275, 469, 932
HpaII CCGG 3 cut(s) 40, 618, 713
Hpy166II GTNNAC 2 cut(s) 533, 651
Hpy188I TCNGA 1 cut(s) 468
Hpy188III TCNNGA 3 cut(s) 57, 99, 473
Hpy8I GTNNAC 2 cut(s) 533, 651
Hpy99I CGWCG 3 cut(s) 58, 100, 578
HpyAV CCTTC 1 cut(s) 836
HpyCH4III ACNGT 2 cut(s) 300, 893
HpyCH4IV ACGT 4 cut(s) 436, 561, 576, 624
HpyCH4V TGCA 6 cut(s) 133, 400, 458, 629, 872, 889
HpyF3I CTNAG 1 cut(s) 171
HpySE526I ACGT 4 cut(s) 436, 561, 576, 624
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 3 cut(s) 646, 711, 797
HspAI GCGC 4 cut(s) 203, 214, 219, 356
KpnI GGTACC 1 cut(s) 719
Ksp22I TGATCA 2 cut(s) 556, 724
KspI CCGCGG 1 cut(s) 37
Kzo9I GATC 8 cut(s) 117, 412, 556, 724, 754, 790, 837, 874
LmnI GCTCC 2 cut(s) 329, 845
Lsp1109I GCAGC 8 cut(s) 17, 166, 187, 835, 838, 898, 901, 920
LweI GCATC 2 cut(s) 166, 638
MaeI CTAG 2 cut(s) 183, 425
MaeII ACGT 4 cut(s) 436, 561, 576, 624
MaeIII GTNAC 9 cut(s) 518, 562, 593, 620, 676, 802, 817, 831, 893
MalI GATC 8 cut(s) 119, 414, 558, 726, 756, 792, 839, 876
MboI GATC 8 cut(s) 117, 412, 556, 724, 754, 790, 837, 874
MboII GAAGA 4 cut(s) 114, 347, 350, 418
MfeI CAATTG 2 cut(s) 732, 901
MhlI GDGCHC 2 cut(s) 19, 66
MluCI AATT 4 cut(s) 235, 512, 732, 901
MlyI GAGTC 1 cut(s) 119
MmeI TCCRAC 1 cut(s) 711
MslI CAYNNNNRTG 2 cut(s) 552, 591
MspA1I CMGCKG 4 cut(s) 8, 36, 829, 911
MspI CCGG 3 cut(s) 40, 618, 713
MteI GCGCNGCGC 1 cut(s) 217
MunI CAATTG 2 cut(s) 732, 901
MvnI CGCG 3 cut(s) 36, 205, 216
NdeI CATATG 1 cut(s) 670
NdeII GATC 8 cut(s) 117, 412, 556, 724, 754, 790, 837, 874
NlaIII CATG 3 cut(s) 646, 711, 797
NlaIV GGNNCC 4 cut(s) 65, 297, 496, 717
NmeAIII GCCGAG 1 cut(s) 139
NmuCI GTSAC 9 cut(s) 518, 562, 593, 620, 676, 802, 817, 831, 893
NspV TTCGAA 1 cut(s) 240
PceI AGGCCT 1 cut(s) 942
PfeI GAWTC 3 cut(s) 275, 469, 932
PflFI GACNNNGTC 1 cut(s) 682
PflMI CCANNNNNTGG 1 cut(s) 577
PleI GAGTC 1 cut(s) 119
PmaCI CACGTG 2 cut(s) 437, 562
PmlI CACGTG 2 cut(s) 437, 562
PpsI GAGTC 1 cut(s) 119
Ppu21I YACGTR 2 cut(s) 437, 562
PpuMI RGGWCCY 1 cut(s) 495
Psp124BI GAGCTC 1 cut(s) 19
Psp5II RGGWCCY 1 cut(s) 495
PspCI CACGTG 2 cut(s) 437, 562
PspN4I GGNNCC 4 cut(s) 65, 297, 496, 717
PspPI GGNCC 3 cut(s) 495, 651, 684
PspPPI RGGWCCY 1 cut(s) 495
PstI CTGCAG 1 cut(s) 874
PstNI CAGNNNCTG 2 cut(s) 829, 914
PsyI GACNNNGTC 1 cut(s) 682
PvuII CAGCTG 3 cut(s) 8, 829, 911
RsaI GTAC 2 cut(s) 12, 717
RsaNI GTAC 2 cut(s) 11, 716
RseI CAYNNNNRTG 2 cut(s) 552, 591
SacI GAGCTC 1 cut(s) 19
SacII CCGCGG 1 cut(s) 37
Sau3AI GATC 8 cut(s) 117, 412, 556, 724, 754, 790, 837, 874
Sau96I GGNCC 3 cut(s) 495, 651, 684
SchI GAGTC 1 cut(s) 119
SduI GDGCHC 2 cut(s) 19, 66
SfaNI GCATC 2 cut(s) 166, 638
SfcI CTRYAG 1 cut(s) 870
Sfr303I CCGCGG 1 cut(s) 37
SfuI TTCGAA 1 cut(s) 240
SgrBI CCGCGG 1 cut(s) 37
SinI GGWCC 3 cut(s) 495, 651, 684
SmiMI CAYNNNNRTG 2 cut(s) 552, 591
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
Sse9I AATT 4 cut(s) 235, 512, 732, 901
SseBI AGGCCT 1 cut(s) 942
SsiI CCGC 9 cut(s) 34, 36, 205, 216, 229, 263, 267, 441, 807
SspMI CTAG 2 cut(s) 183, 425
SstI GAGCTC 1 cut(s) 19
StuI AGGCCT 1 cut(s) 942
StyI CCWWGG 1 cut(s) 937
TaaI ACNGT 2 cut(s) 300, 893
TaiI ACGT 4 cut(s) 439, 564, 579, 627
TaqI TCGA 7 cut(s) 56, 162, 240, 254, 632, 764, 840
TasI AATT 4 cut(s) 235, 512, 732, 901
TauI GCSGC 2 cut(s) 39, 219
TfiI GAWTC 3 cut(s) 275, 469, 932
TscAI CASTG 3 cut(s) 598, 764, 896
TseFI GTSAC 9 cut(s) 518, 562, 593, 620, 676, 802, 817, 831, 893
TseI GCWGC 8 cut(s) 5, 179, 200, 823, 826, 908, 911, 914
Tsp45I GTSAC 9 cut(s) 518, 562, 593, 620, 676, 802, 817, 831, 893
TspDTI ATGAA 3 cut(s) 471, 672, 687
TspGWI ACGGA 1 cut(s) 405
TspRI CASTG 3 cut(s) 598, 764, 896
Tth111I GACNNNGTC 1 cut(s) 682
Van91I CCANNNNNTGG 1 cut(s) 577
VpaK11BI GGWCC 3 cut(s) 495, 651, 684
XapI RAATTY 1 cut(s) 512
XmiI GTMKAC 1 cut(s) 532
XspI CTAG 2 cut(s) 183, 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.