Rroxscaffold_3G00266900

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
60059220 .. 60060197
978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00266900.1

Sequence Viewer

Length: 978 bp
ATGGCAGCTGTACGAGCTCAAAACGATGGCGTCCGCGGCCGGAGGAAGTCATCGTCGAGAGGGCACCATAGGTTCGTGGGAGTGAGGCAGAGGCCGTCGGGAAGATGGGTGGCCGAGATCAAAGACTCGTTGCAAAAAGTCAGGCTTTGGCTTGGCACTTTCGATACTGCTGAGGATGCTGCTAGGGCTTATGATGACGCTGCGCGGACTTTGCGCGGCGCAAATGCCCGCACCAATTTCGAACTGCCTCAATCGAATGGTGCGGGAGTGGGAGATTCGGGGATGGAAAATGTGGAACCGTTTTCGTTTGAGGATGTTTGTGGCAATGGAGCTGAAGAAGATGGCTTGCTTGGTGCACTCAAGGCTAAGTTGCTTGATGGCAATGGATTTAGTCGGGTGCAGGAGAAGATTGATTCGTCTCCTCTTGTTGTGCCACGTGGCGGTGGGTTTGGATTTGCAAACCCTTCGAATCAGCAGGGTTCATATATAGCAGGGTCCTCAAAGGAAAAAAATTTTAGTCACACTCGGTGTATACAACCTCCCTCTCACAAAAATGATCACATGACAGGCCACGACGTGGTATTCGATATCAGTGACCAGACAGAGGTGGCCGTGTCCGGTCACGTTGCATCGAACTCGGGCATGGTGTGGACCAATGAACCTCCAGCATATGAAGTGACTTGGTCCAACACACTTCCTATGCCTACATGGCAGGTACCAACTGATCAGTCAATTGTGAGTATGTCATATGCAGATCAGTGTTCGATGGAGTTGCCAACAACAAGTAGAGATCATGGTAAAGTGACCGCCGTAGGCGTGACGCAGCAGCTGTCACAGATCGAAGGAGCAATGGGAGGTGGTGCTTGGTCTGCAGATCAGCAATATATGCACTGTGACAACAATTGGGCAGCTGCTGCTAACGGCACTTGGGAATCCCAAGGCCTCTTCTATCAGCCCTCTGTTTCTGGGGTGATTTGA

Protein Analysis

325

Amino Acids

35.04

Weight (kDa)

5.59

Isoelectric Point (pI)

42.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 24 - 73 1.5e-13 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 703
Acc65I GGTACC 1 cut(s) 715
AccB1I GGYRCC 2 cut(s) 63, 715
AccB7I CCANNNNNTGG 1 cut(s) 577
AccI GTMKAC 1 cut(s) 532
AccII CGCG 3 cut(s) 36, 205, 216
AciI CCGC 8 cut(s) 34, 36, 205, 216, 229, 263, 441, 807
AcoI YGGCCR 3 cut(s) 37, 111, 609
AcsI RAATTY 1 cut(s) 511
AcuI CTGAAG 1 cut(s) 354
AcvI CACGTG 1 cut(s) 437
AcyI GRCGYC 1 cut(s) 30
AdeI CACNNNGTG 2 cut(s) 528, 577
AfaI GTAC 2 cut(s) 12, 717
AfiI CCNNNNNNNGG 3 cut(s) 440, 577, 604
AjiI CACGTC 1 cut(s) 577
AluBI AGCT 5 cut(s) 8, 17, 332, 829, 911
AluI AGCT 5 cut(s) 8, 17, 332, 829, 911
Alw21I GWGCWC 2 cut(s) 19, 358
Alw26I GTCTC 1 cut(s) 423
Alw44I GTGCAC 1 cut(s) 354
AlwNI CAGNNNCTG 2 cut(s) 829, 914
Ama87I CYCGRG 1 cut(s) 637
AoxI GGCC 6 cut(s) 37, 92, 111, 568, 609, 940
ApaLI GTGCAC 1 cut(s) 354
ApeKI GCWGC 8 cut(s) 5, 179, 200, 823, 826, 908, 911, 914
ApoI RAATTY 1 cut(s) 511
ArsI GACNNNNNNTTYG 2 cut(s) 566, 598
Asp718I GGTACC 1 cut(s) 715
AspLEI GCGC 3 cut(s) 205, 216, 221
AspS9I GGNCC 3 cut(s) 495, 651, 684
AsuII TTCGAA 2 cut(s) 240, 467
AvaI CYCGRG 1 cut(s) 637
AvaII GGWCC 3 cut(s) 495, 651, 684
BaeGI GKGCMC 2 cut(s) 66, 358
BanI GGYRCC 2 cut(s) 63, 715
BanII GRGCYC 1 cut(s) 19
BbrPI CACGTG 1 cut(s) 437
Bbv12I GWGCWC 2 cut(s) 19, 358
BbvCI CCTCAGC 1 cut(s) 171
BbvI GCAGC 8 cut(s) 17, 166, 187, 835, 838, 898, 901, 920
BccI CCATC 6 cut(s) 20, 99, 277, 335, 371, 760
BceAI ACGGC 4 cut(s) 79, 596, 794, 937
BcgI CGANNNNNNTGC 8 cut(s) 220, 254, 447, 481, 618, 652, 754, 788
BclI TGATCA 2 cut(s) 556, 724
BcoDI GTCTC 1 cut(s) 423
BfaI CTAG 1 cut(s) 183
BfmI CTRYAG 1 cut(s) 870
BfuAI ACCTGC 1 cut(s) 703
BglI GCCNNNNNGGC 1 cut(s) 709
Bme18I GGWCC 3 cut(s) 495, 651, 684
BmeT110I CYCGRG 1 cut(s) 637
BmgBI CACGTC 1 cut(s) 577
BmgT120I GGNCC 3 cut(s) 495, 651, 684
BmiI GGNNCC 4 cut(s) 65, 297, 496, 717
BmsI GCATC 2 cut(s) 166, 638
BpmI CTGGAG 1 cut(s) 648
Bpu10I CCTNAGC 1 cut(s) 171
Bpu14I TTCGAA 2 cut(s) 240, 467
BpuEI CTTGAG 1 cut(s) 344
BsaAI YACGTR 1 cut(s) 437
BsaHI GRCGYC 1 cut(s) 30
BsaJI CCNNGG 2 cut(s) 34, 937
BsaWI WCCGGW 1 cut(s) 617
Bsc4I CCNNNNNNNGG 3 cut(s) 440, 577, 604
Bse3DI GCAATG 3 cut(s) 331, 388, 855
BseDI CCNNGG 2 cut(s) 34, 937
BseGI GGATG 3 cut(s) 181, 288, 319
BseLI CCNNNNNNNGG 3 cut(s) 440, 577, 604
BseMI GCAATG 3 cut(s) 331, 388, 855
BseMII CTCAG 1 cut(s) 162
BseRI GAGGAG 1 cut(s) 411
BseSI GKGCMC 2 cut(s) 66, 358
BseX3I CGGCCG 1 cut(s) 37
BseXI GCAGC 8 cut(s) 17, 166, 187, 835, 838, 898, 901, 920
BsgI GTGCAG 1 cut(s) 419
Bsh1236I CGCG 3 cut(s) 36, 205, 216
Bsh1285I CGRYCG 1 cut(s) 40
BshFI GGCC 6 cut(s) 39, 94, 113, 570, 611, 942
BshNI GGYRCC 2 cut(s) 63, 715
BsiEI CGRYCG 1 cut(s) 40
BsiHKAI GWGCWC 2 cut(s) 19, 358
BsiHKCI CYCGRG 1 cut(s) 637
BsiSI CCGG 2 cut(s) 40, 618
BslI CCNNNNNNNGG 3 cut(s) 440, 577, 604
BsmAI GTCTC 1 cut(s) 423
BsmBI CGTCTC 1 cut(s) 423
BsnI GGCC 6 cut(s) 39, 94, 113, 570, 611, 942
BsoBI CYCGRG 1 cut(s) 637
Bsp119I TTCGAA 2 cut(s) 240, 467
Bsp1286I GDGCHC 3 cut(s) 19, 66, 358
Bsp143I GATC 7 cut(s) 117, 556, 724, 754, 790, 837, 874
BspACI CCGC 8 cut(s) 34, 36, 205, 216, 229, 263, 441, 807
BspANI GGCC 6 cut(s) 39, 94, 113, 570, 611, 942
BspCNI CTCAG 1 cut(s) 163
BspFNI CGCG 3 cut(s) 36, 205, 216
BspLI GGNNCC 4 cut(s) 65, 297, 496, 717
BspMAI CTGCAG 1 cut(s) 874
BspMI ACCTGC 1 cut(s) 703
BspT104I TTCGAA 2 cut(s) 240, 467
BspT107I GGYRCC 2 cut(s) 63, 715
BsrDI GCAATG 3 cut(s) 331, 388, 855
BssECI CCNNGG 2 cut(s) 34, 937
BssMI GATC 7 cut(s) 117, 556, 724, 754, 790, 837, 874
BssNAI GTATAC 1 cut(s) 533
BssNI GRCGYC 1 cut(s) 30
BssT1I CCWWGG 1 cut(s) 937
Bst1107I GTATAC 1 cut(s) 533
Bst4CI ACNGT 2 cut(s) 300, 893
Bst6I CTCTTC 1 cut(s) 950
BstACI GRCGYC 1 cut(s) 30
BstAPI GCANNNNNTGC 2 cut(s) 886, 914
BstBAI YACGTR 1 cut(s) 437
BstBI TTCGAA 2 cut(s) 240, 467
BstC8I GCNNGC 2 cut(s) 229, 347
BstDEI CTNAG 2 cut(s) 171, 366
BstDSI CCRYGG 1 cut(s) 34
BstF5I GGATG 3 cut(s) 181, 288, 319
BstFNI CGCG 3 cut(s) 36, 205, 216
BstHHI GCGC 3 cut(s) 205, 216, 221
BstKTI GATC 7 cut(s) 120, 559, 727, 757, 793, 840, 877
BstMAI GTCTC 1 cut(s) 423
BstMBI GATC 7 cut(s) 117, 556, 724, 754, 790, 837, 874
BstMCI CGRYCG 1 cut(s) 40
BstSFI CTRYAG 1 cut(s) 870
BstSLI GKGCMC 2 cut(s) 66, 358
BstUI CGCG 3 cut(s) 36, 205, 216
BstV1I GCAGC 8 cut(s) 17, 166, 187, 835, 838, 898, 901, 920
BstZ17I GTATAC 1 cut(s) 533
BstZI CGGCCG 1 cut(s) 37
BsuRI GGCC 6 cut(s) 39, 94, 113, 570, 611, 942
BtgI CCRYGG 1 cut(s) 34
BtrI CACGTC 1 cut(s) 577
BtsCI GGATG 3 cut(s) 181, 288, 319
BtsIMutI CAGTG 3 cut(s) 598, 764, 889
BveI ACCTGC 1 cut(s) 703
Cac8I GCNNGC 2 cut(s) 229, 347
CaiI CAGNNNCTG 2 cut(s) 829, 914
CfoI GCGC 3 cut(s) 205, 216, 221
Cfr13I GGNCC 3 cut(s) 495, 651, 684
Cfr42I CCGCGG 1 cut(s) 37
CseI GACGC 3 cut(s) 19, 206, 829
Csp6I GTAC 2 cut(s) 11, 716
CviAII CATG 4 cut(s) 562, 643, 708, 794
CviQI GTAC 2 cut(s) 11, 716
DdeI CTNAG 2 cut(s) 171, 366
DpnI GATC 7 cut(s) 119, 558, 726, 756, 792, 839, 876
DpnII GATC 7 cut(s) 117, 556, 724, 754, 790, 837, 874
DraIII CACNNNGTG 2 cut(s) 528, 577
EaeI YGGCCR 3 cut(s) 37, 111, 609
EagI CGGCCG 1 cut(s) 37
Eam1104I CTCTTC 1 cut(s) 950
EarI CTCTTC 1 cut(s) 950
Ecl136II GAGCTC 1 cut(s) 17
EclXI CGGCCG 1 cut(s) 37
Eco130I CCWWGG 1 cut(s) 937
Eco147I AGGCCT 1 cut(s) 942
Eco24I GRGCYC 1 cut(s) 19
Eco32I GATATC 1 cut(s) 589
Eco47I GGWCC 3 cut(s) 495, 651, 684
Eco52I CGGCCG 1 cut(s) 37
Eco53kI GAGCTC 1 cut(s) 17
Eco57I CTGAAG 1 cut(s) 354
Eco72I CACGTG 1 cut(s) 437
Eco88I CYCGRG 1 cut(s) 637
EcoICRI GAGCTC 1 cut(s) 17
EcoO109I RGGNCCY 1 cut(s) 495
EcoRV GATATC 1 cut(s) 589
EcoT14I CCWWGG 1 cut(s) 937
EcoT38I GRGCYC 1 cut(s) 19
ErhI CCWWGG 1 cut(s) 937
Esp3I CGTCTC 1 cut(s) 423
FaeI CATG 4 cut(s) 565, 646, 711, 797
FalI AAGNNNNNCTT 2 cut(s) 129, 161
FatI CATG 4 cut(s) 561, 642, 707, 793
FauI CCCGC 2 cut(s) 236, 256
FauNDI CATATG 2 cut(s) 670, 748
FbaI TGATCA 2 cut(s) 556, 724
FblI GTMKAC 1 cut(s) 532
FokI GGATG 3 cut(s) 188, 295, 326
FriOI GRGCYC 1 cut(s) 19
FspBI CTAG 1 cut(s) 183
GlaI GCGC 3 cut(s) 204, 215, 220
GsuI CTGGAG 1 cut(s) 648
HaeIII GGCC 6 cut(s) 39, 94, 113, 570, 611, 942
HapII CCGG 2 cut(s) 40, 618
HgaI GACGC 3 cut(s) 19, 206, 829
HhaI GCGC 3 cut(s) 205, 216, 221
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 4 cut(s) 565, 646, 711, 797
Hin6I GCGC 3 cut(s) 203, 214, 219
HinP1I GCGC 3 cut(s) 203, 214, 219
HinfI GANTC 5 cut(s) 125, 275, 413, 469, 932
HpaII CCGG 2 cut(s) 40, 618
Hpy166II GTNNAC 3 cut(s) 356, 533, 651
Hpy188III TCNNGA 2 cut(s) 57, 99
Hpy8I GTNNAC 3 cut(s) 356, 533, 651
Hpy99I CGWCG 3 cut(s) 58, 100, 578
HpyAV CCTTC 2 cut(s) 474, 836
HpyCH4III ACNGT 2 cut(s) 300, 893
HpyCH4IV ACGT 3 cut(s) 436, 576, 624
HpyCH4V TGCA 8 cut(s) 133, 356, 400, 458, 629, 752, 872, 889
HpyF3I CTNAG 2 cut(s) 171, 366
HpySE526I ACGT 3 cut(s) 436, 576, 624
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 4 cut(s) 565, 646, 711, 797
HspAI GCGC 3 cut(s) 203, 214, 219
KpnI GGTACC 1 cut(s) 719
Ksp22I TGATCA 2 cut(s) 556, 724
KspI CCGCGG 1 cut(s) 37
Kzo9I GATC 7 cut(s) 117, 556, 724, 754, 790, 837, 874
LmnI GCTCC 2 cut(s) 329, 845
Lsp1109I GCAGC 8 cut(s) 17, 166, 187, 835, 838, 898, 901, 920
LweI GCATC 2 cut(s) 166, 638
MaeI CTAG 1 cut(s) 183
MaeII ACGT 3 cut(s) 436, 576, 624
MaeIII GTNAC 8 cut(s) 518, 593, 620, 676, 802, 817, 831, 893
MalI GATC 7 cut(s) 119, 558, 726, 756, 792, 839, 876
MboI GATC 7 cut(s) 117, 556, 724, 754, 790, 837, 874
MboII GAAGA 5 cut(s) 114, 347, 350, 418, 937
MfeI CAATTG 2 cut(s) 732, 901
MhlI GDGCHC 3 cut(s) 19, 66, 358
MluCI AATT 4 cut(s) 235, 511, 732, 901
MlyI GAGTC 1 cut(s) 119
MmeI TCCRAC 1 cut(s) 711
MslI CAYNNNNRTG 1 cut(s) 552
MspA1I CMGCKG 4 cut(s) 8, 36, 829, 911
MspI CCGG 2 cut(s) 40, 618
MteI GCGCNGCGC 1 cut(s) 217
MunI CAATTG 2 cut(s) 732, 901
MvnI CGCG 3 cut(s) 36, 205, 216
NdeI CATATG 2 cut(s) 670, 748
NdeII GATC 7 cut(s) 117, 556, 724, 754, 790, 837, 874
NlaIII CATG 4 cut(s) 565, 646, 711, 797
NlaIV GGNNCC 4 cut(s) 65, 297, 496, 717
NmeAIII GCCGAG 1 cut(s) 139
NmuCI GTSAC 8 cut(s) 518, 593, 620, 676, 802, 817, 831, 893
NspV TTCGAA 2 cut(s) 240, 467
PceI AGGCCT 1 cut(s) 942
PcsI WCGNNNNNNNCGW 1 cut(s) 582
PfeI GAWTC 4 cut(s) 275, 413, 469, 932
PflFI GACNNNGTC 1 cut(s) 682
PflMI CCANNNNNTGG 1 cut(s) 577
PleI GAGTC 1 cut(s) 119
PmaCI CACGTG 1 cut(s) 437
PmlI CACGTG 1 cut(s) 437
PpsI GAGTC 1 cut(s) 119
Ppu21I YACGTR 1 cut(s) 437
PpuMI RGGWCCY 1 cut(s) 495
Psp124BI GAGCTC 1 cut(s) 19
Psp5II RGGWCCY 1 cut(s) 495
PspCI CACGTG 1 cut(s) 437
PspN4I GGNNCC 4 cut(s) 65, 297, 496, 717
PspPI GGNCC 3 cut(s) 495, 651, 684
PspPPI RGGWCCY 1 cut(s) 495
PstI CTGCAG 1 cut(s) 874
PstNI CAGNNNCTG 2 cut(s) 829, 914
PsyI GACNNNGTC 1 cut(s) 682
PvuII CAGCTG 3 cut(s) 8, 829, 911
RsaI GTAC 2 cut(s) 12, 717
RsaNI GTAC 2 cut(s) 11, 716
RseI CAYNNNNRTG 1 cut(s) 552
SacI GAGCTC 1 cut(s) 19
SacII CCGCGG 1 cut(s) 37
Sau3AI GATC 7 cut(s) 117, 556, 724, 754, 790, 837, 874
Sau96I GGNCC 3 cut(s) 495, 651, 684
SchI GAGTC 1 cut(s) 119
SduI GDGCHC 3 cut(s) 19, 66, 358
SfaNI GCATC 2 cut(s) 166, 638
SfcI CTRYAG 1 cut(s) 870
Sfr303I CCGCGG 1 cut(s) 37
SfuI TTCGAA 2 cut(s) 240, 467
SgrBI CCGCGG 1 cut(s) 37
SinI GGWCC 3 cut(s) 495, 651, 684
SmiMI CAYNNNNRTG 1 cut(s) 552
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
Sse9I AATT 4 cut(s) 235, 511, 732, 901
SseBI AGGCCT 1 cut(s) 942
SsiI CCGC 8 cut(s) 34, 36, 205, 216, 229, 263, 441, 807
SspMI CTAG 1 cut(s) 183
SstI GAGCTC 1 cut(s) 19
StuI AGGCCT 1 cut(s) 942
StyI CCWWGG 1 cut(s) 937
TaaI ACNGT 2 cut(s) 300, 893
TaiI ACGT 3 cut(s) 439, 579, 627
TaqI TCGA 9 cut(s) 56, 162, 240, 254, 467, 585, 632, 764, 840
TasI AATT 4 cut(s) 235, 511, 732, 901
TauI GCSGC 2 cut(s) 39, 219
TfiI GAWTC 4 cut(s) 275, 413, 469, 932
TscAI CASTG 3 cut(s) 598, 764, 896
TseFI GTSAC 8 cut(s) 518, 593, 620, 676, 802, 817, 831, 893
TseI GCWGC 8 cut(s) 5, 179, 200, 823, 826, 908, 911, 914
Tsp45I GTSAC 8 cut(s) 518, 593, 620, 676, 802, 817, 831, 893
TspDTI ATGAA 3 cut(s) 471, 672, 687
TspRI CASTG 3 cut(s) 598, 764, 896
Tth111I GACNNNGTC 1 cut(s) 682
Van91I CCANNNNNTGG 1 cut(s) 577
VneI GTGCAC 1 cut(s) 354
VpaK11BI GGWCC 3 cut(s) 495, 651, 684
XapI RAATTY 1 cut(s) 511
XmiI GTMKAC 1 cut(s) 532
XspI CTAG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.