Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018017.1

Orthogroup ID

OG0013672

Physical Location & Seq

Genomic Coordinates Forward (+)

2222 .. 3199

Gene Structure 978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018017.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

atggcatctgtacgagctcaaaacgatggcgtccgcggccggaggaagtcatcgtcgagagggcaccatagatttgtgggagtgaggcagaggccgtcgggaagatgggtggccgagatcaaagactcgttgcaaaaggtcaggctttggcttggcactttcgatactgctgaggatgctgctagggcttatgatgacgctgcgcggactttgcgcggcgcaaatgcccgcaccaatttcgaactgcctcaatcgaatggtgcgggcgggggagattcggggatggaaaatgtggaaccgttttcgtttgaggatgtttgtggcaatggagctgaagaagacggcttgcttggtgcgctcaaggccaagttgcttgatggcaagggatttagtcgggtgcaagagaagattgattcgtctcctctagttgtgccacgtggcggtggttttggatttgcaaaccctccgaatcaggagggttcatatatagcagggtcctcaaaggaaaaaaaatttagtcacactcggtgtatacaacctccctctcacaaaaatgatcacatgacaggccacgacgtggtattccatatcagtgaccagacagaggtggccgtgtccggtcacgttgcatcgaactcgggcatggtgtggaccaatgaacctccagcatatgaagtgacttggtccaacacacttcctatgcctacatggccggtaccaactgatcagtcaattgtgagtatgtcatatacagatcagtgttcgatggagttgccaacaacaagtagagatcatggtaaagtgaccgccataggcgtgacgcagcagctgtcacagatcgaaggagcaatgggaggtggtgcttggtctgcagatcagcaatatatgcactgtgacaacaattgggcagctgctgctaacggcacttgggaatcccaaggcctctactatcaaccctctgtttctggggtgatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035864 GO:0035865 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048364 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

325

Amino Acids

35.1

Weight (kDa)

5.93

Isoelectric Point (pI)

44.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013672)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g10260
malus_domestica	MD00G1118900.v1.1 MD06G1125700.v1.1
prunus_persica	Prupe.5G136200_v2.0.a1
pyrus_communis	pycom06g11610 pycom14g11740
rosa_chinensis	RchiOBHm_Chr7g0187951
rosa_laevigata	RLG00000004742
rosa_multiflora	Rmu_sc0015523.1_g000010 Rmu_sc0018017.1_g000002 Rmu_sc0029514.1_g000002
rosa_roxburghii	Rroxscaffold_3G00266900
rosa_rugosa	Rorug06G0486500
rosa_samantha	Rh7AG090800 Rh7BG092400 Rh7CG091700 Rh7DG093200
rosa_wichuraiana	Rw7G007840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	715
AccB1I	GGYRCC	2 cut(s)	63, 715
AccB7I	CCANNNNNTGG	1 cut(s)	577
AccI	GTMKAC	1 cut(s)	532
AccII	CGCG	3 cut(s)	36, 205, 216
AciI	CCGC	9 cut(s)	34, 36, 205, 216, 229, 263, 267, 441, 807
AcoI	YGGCCR	4 cut(s)	37, 111, 609, 710
AcsI	RAATTY	1 cut(s)	512
AcuI	CTGAAG	1 cut(s)	354
AcvI	CACGTG	1 cut(s)	437
AcyI	GRCGYC	1 cut(s)	30
AdeI	CACNNNGTG	2 cut(s)	528, 577
AfaI	GTAC	2 cut(s)	12, 717
AfiI	CCNNNNNNNGG	3 cut(s)	440, 577, 604
AjiI	CACGTC	1 cut(s)	577
AluBI	AGCT	4 cut(s)	17, 332, 829, 911
AluI	AGCT	4 cut(s)	17, 332, 829, 911
Alw21I	GWGCWC	1 cut(s)	19
Alw26I	GTCTC	1 cut(s)	423
AlwNI	CAGNNNCTG	2 cut(s)	829, 914
Ama87I	CYCGRG	1 cut(s)	637
AoxI	GGCC	8 cut(s)	37, 92, 111, 363, 568, 609, 710, 940
ApeKI	GCWGC	7 cut(s)	179, 200, 823, 826, 908, 911, 914
ApoI	RAATTY	1 cut(s)	512
Asp718I	GGTACC	1 cut(s)	715
AspLEI	GCGC	4 cut(s)	205, 216, 221, 358
AspS9I	GGNCC	3 cut(s)	495, 651, 684
AsuII	TTCGAA	1 cut(s)	240
AvaI	CYCGRG	1 cut(s)	637
AvaII	GGWCC	3 cut(s)	495, 651, 684
BaeGI	GKGCMC	1 cut(s)	66
BanI	GGYRCC	2 cut(s)	63, 715
BanII	GRGCYC	1 cut(s)	19
BbrPI	CACGTG	1 cut(s)	437
BbsI	GAAGAC	1 cut(s)	345
Bbv12I	GWGCWC	1 cut(s)	19
BbvCI	CCTCAGC	1 cut(s)	171
BbvI	GCAGC	7 cut(s)	166, 187, 835, 838, 898, 901, 920
BccI	CCATC	5 cut(s)	20, 99, 277, 371, 760
BceAI	ACGGC	4 cut(s)	79, 358, 596, 937
BcgI	CGANNNNNNTGC	6 cut(s)	220, 254, 618, 652, 754, 788
BclI	TGATCA	2 cut(s)	556, 724
BcoDI	GTCTC	1 cut(s)	423
BfaI	CTAG	2 cut(s)	183, 425
BfmI	CTRYAG	1 cut(s)	870
BglI	GCCNNNNNGGC	1 cut(s)	709
BisI	GCNGC	9 cut(s)	37, 180, 201, 217, 824, 827, 909, 912, 915
BlsI	GCNGC	9 cut(s)	38, 181, 202, 218, 825, 828, 910, 913, 916
Bme18I	GGWCC	3 cut(s)	495, 651, 684
BmeT110I	CYCGRG	1 cut(s)	637
BmgBI	CACGTC	1 cut(s)	577
BmgT120I	GGNCC	3 cut(s)	495, 651, 684
BmiI	GGNNCC	4 cut(s)	65, 297, 496, 717
BmsI	GCATC	3 cut(s)	14, 166, 638
BpiI	GAAGAC	1 cut(s)	345
BpmI	CTGGAG	1 cut(s)	648
Bpu10I	CCTNAGC	1 cut(s)	171
Bpu14I	TTCGAA	1 cut(s)	240
BpuEI	CTTGAG	1 cut(s)	344
BsaAI	YACGTR	1 cut(s)	437
BsaHI	GRCGYC	1 cut(s)	30
BsaJI	CCNNGG	2 cut(s)	34, 937
BsaWI	WCCGGW	1 cut(s)	617
Bsc4I	CCNNNNNNNGG	3 cut(s)	440, 577, 604
Bse118I	RCCGGY	1 cut(s)	712
Bse3DI	GCAATG	2 cut(s)	331, 855
BseDI	CCNNGG	2 cut(s)	34, 937
BseGI	GGATG	3 cut(s)	181, 288, 319
BseLI	CCNNNNNNNGG	3 cut(s)	440, 577, 604
BseMI	GCAATG	2 cut(s)	331, 855
BseMII	CTCAG	1 cut(s)	162
BseRI	GAGGAG	1 cut(s)	411
BseSI	GKGCMC	1 cut(s)	66
BseX3I	CGGCCG	1 cut(s)	37
BseXI	GCAGC	7 cut(s)	166, 187, 835, 838, 898, 901, 920
Bsh1236I	CGCG	3 cut(s)	36, 205, 216
Bsh1285I	CGRYCG	1 cut(s)	40
BshFI	GGCC	8 cut(s)	39, 94, 113, 365, 570, 611, 712, 942
BshNI	GGYRCC	2 cut(s)	63, 715
BsiEI	CGRYCG	1 cut(s)	40
BsiHKAI	GWGCWC	1 cut(s)	19
BsiHKCI	CYCGRG	1 cut(s)	637
BsiSI	CCGG	3 cut(s)	40, 618, 713
BslI	CCNNNNNNNGG	3 cut(s)	440, 577, 604
BsmAI	GTCTC	1 cut(s)	423
BsmBI	CGTCTC	1 cut(s)	423
BsnI	GGCC	8 cut(s)	39, 94, 113, 365, 570, 611, 712, 942
BsoBI	CYCGRG	1 cut(s)	637
Bsp119I	TTCGAA	1 cut(s)	240
Bsp1286I	GDGCHC	2 cut(s)	19, 66
Bsp143I	GATC	7 cut(s)	117, 556, 724, 754, 790, 837, 874
BspACI	CCGC	9 cut(s)	34, 36, 205, 216, 229, 263, 267, 441, 807
BspANI	GGCC	8 cut(s)	39, 94, 113, 365, 570, 611, 712, 942
BspCNI	CTCAG	1 cut(s)	163
BspFNI	CGCG	3 cut(s)	36, 205, 216
BspLI	GGNNCC	4 cut(s)	65, 297, 496, 717
BspMAI	CTGCAG	1 cut(s)	874
BspT104I	TTCGAA	1 cut(s)	240
BspT107I	GGYRCC	2 cut(s)	63, 715
BsrDI	GCAATG	2 cut(s)	331, 855
BsrFI	RCCGGY	1 cut(s)	712
BssAI	RCCGGY	1 cut(s)	712
BssECI	CCNNGG	2 cut(s)	34, 937
BssMI	GATC	7 cut(s)	117, 556, 724, 754, 790, 837, 874
BssNAI	GTATAC	1 cut(s)	533
BssNI	GRCGYC	1 cut(s)	30
BssT1I	CCWWGG	1 cut(s)	937
Bst1107I	GTATAC	1 cut(s)	533
Bst4CI	ACNGT	2 cut(s)	300, 893
BstACI	GRCGYC	1 cut(s)	30
BstAPI	GCANNNNNTGC	2 cut(s)	886, 914
BstBAI	YACGTR	1 cut(s)	437
BstBI	TTCGAA	1 cut(s)	240
BstC8I	GCNNGC	3 cut(s)	229, 265, 347
BstDEI	CTNAG	1 cut(s)	171
BstDSI	CCRYGG	1 cut(s)	34
BstF5I	GGATG	3 cut(s)	181, 288, 319
BstFNI	CGCG	3 cut(s)	36, 205, 216
BstHHI	GCGC	4 cut(s)	205, 216, 221, 358
BstKTI	GATC	7 cut(s)	120, 559, 727, 757, 793, 840, 877
BstMAI	GTCTC	1 cut(s)	423
BstMBI	GATC	7 cut(s)	117, 556, 724, 754, 790, 837, 874
BstMCI	CGRYCG	1 cut(s)	40
BstSFI	CTRYAG	1 cut(s)	870
BstSLI	GKGCMC	1 cut(s)	66
BstUI	CGCG	3 cut(s)	36, 205, 216
BstV1I	GCAGC	7 cut(s)	166, 187, 835, 838, 898, 901, 920
BstV2I	GAAGAC	1 cut(s)	345
BstZ17I	GTATAC	1 cut(s)	533
BstZI	CGGCCG	1 cut(s)	37
BsuRI	GGCC	8 cut(s)	39, 94, 113, 365, 570, 611, 712, 942
BtgI	CCRYGG	1 cut(s)	34
BtrI	CACGTC	1 cut(s)	577
BtsCI	GGATG	3 cut(s)	181, 288, 319
BtsIMutI	CAGTG	3 cut(s)	598, 764, 889
Cac8I	GCNNGC	3 cut(s)	229, 265, 347
CaiI	CAGNNNCTG	2 cut(s)	829, 914
CfoI	GCGC	4 cut(s)	205, 216, 221, 358
Cfr10I	RCCGGY	1 cut(s)	712
Cfr13I	GGNCC	3 cut(s)	495, 651, 684
Cfr42I	CCGCGG	1 cut(s)	37
CseI	GACGC	3 cut(s)	19, 206, 829
Csp6I	GTAC	2 cut(s)	11, 716
CviAII	CATG	4 cut(s)	562, 643, 708, 794
CviQI	GTAC	2 cut(s)	11, 716
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	7 cut(s)	119, 558, 726, 756, 792, 839, 876
DpnII	GATC	7 cut(s)	117, 556, 724, 754, 790, 837, 874
DraIII	CACNNNGTG	2 cut(s)	528, 577
EaeI	YGGCCR	4 cut(s)	37, 111, 609, 710
EagI	CGGCCG	1 cut(s)	37
Ecl136II	GAGCTC	1 cut(s)	17
EclXI	CGGCCG	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	937
Eco147I	AGGCCT	1 cut(s)	942
Eco24I	GRGCYC	1 cut(s)	19
Eco47I	GGWCC	3 cut(s)	495, 651, 684
Eco52I	CGGCCG	1 cut(s)	37
Eco53kI	GAGCTC	1 cut(s)	17
Eco57I	CTGAAG	1 cut(s)	354
Eco72I	CACGTG	1 cut(s)	437
Eco88I	CYCGRG	1 cut(s)	637
EcoICRI	GAGCTC	1 cut(s)	17
EcoO109I	RGGNCCY	1 cut(s)	495
EcoT14I	CCWWGG	1 cut(s)	937
EcoT38I	GRGCYC	1 cut(s)	19
ErhI	CCWWGG	1 cut(s)	937
Esp3I	CGTCTC	1 cut(s)	423
FaeI	CATG	4 cut(s)	565, 646, 711, 797
FatI	CATG	4 cut(s)	561, 642, 707, 793
FauI	CCCGC	3 cut(s)	236, 256, 260
FauNDI	CATATG	1 cut(s)	670
FbaI	TGATCA	2 cut(s)	556, 724
FblI	GTMKAC	1 cut(s)	532
Fnu4HI	GCNGC	9 cut(s)	37, 180, 201, 217, 824, 827, 909, 912, 915
FokI	GGATG	3 cut(s)	188, 295, 326
FriOI	GRGCYC	1 cut(s)	19
Fsp4HI	GCNGC	9 cut(s)	37, 180, 201, 217, 824, 827, 909, 912, 915
FspBI	CTAG	2 cut(s)	183, 425
GlaI	GCGC	4 cut(s)	204, 215, 220, 357
GluI	GCNGC	9 cut(s)	37, 180, 201, 217, 824, 827, 909, 912, 915
GsuI	CTGGAG	1 cut(s)	648
HaeIII	GGCC	8 cut(s)	39, 94, 113, 365, 570, 611, 712, 942
HapII	CCGG	3 cut(s)	40, 618, 713
HgaI	GACGC	3 cut(s)	19, 206, 829
HhaI	GCGC	4 cut(s)	205, 216, 221, 358
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	4 cut(s)	565, 646, 711, 797
Hin6I	GCGC	4 cut(s)	203, 214, 219, 356
HinP1I	GCGC	4 cut(s)	203, 214, 219, 356
HinfI	GANTC	5 cut(s)	125, 275, 413, 469, 932
HpaII	CCGG	3 cut(s)	40, 618, 713
Hpy166II	GTNNAC	2 cut(s)	533, 651
Hpy188I	TCNGA	1 cut(s)	468
Hpy188III	TCNNGA	3 cut(s)	57, 99, 473
Hpy8I	GTNNAC	2 cut(s)	533, 651
Hpy99I	CGWCG	3 cut(s)	58, 100, 578
HpyAV	CCTTC	1 cut(s)	836
HpyCH4III	ACNGT	2 cut(s)	300, 893
HpyCH4IV	ACGT	3 cut(s)	436, 576, 624
HpyCH4V	TGCA	6 cut(s)	133, 400, 458, 629, 872, 889
HpyF3I	CTNAG	1 cut(s)	171
HpySE526I	ACGT	3 cut(s)	436, 576, 624
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	4 cut(s)	565, 646, 711, 797
HspAI	GCGC	4 cut(s)	203, 214, 219, 356
KpnI	GGTACC	1 cut(s)	719
Ksp22I	TGATCA	2 cut(s)	556, 724
KspI	CCGCGG	1 cut(s)	37
Kzo9I	GATC	7 cut(s)	117, 556, 724, 754, 790, 837, 874
LmnI	GCTCC	2 cut(s)	329, 845
Lsp1109I	GCAGC	7 cut(s)	166, 187, 835, 838, 898, 901, 920
LweI	GCATC	3 cut(s)	14, 166, 638
MaeI	CTAG	2 cut(s)	183, 425
MaeII	ACGT	3 cut(s)	436, 576, 624
MaeIII	GTNAC	8 cut(s)	518, 593, 620, 676, 802, 817, 831, 893
MalI	GATC	7 cut(s)	119, 558, 726, 756, 792, 839, 876
MboI	GATC	7 cut(s)	117, 556, 724, 754, 790, 837, 874
MboII	GAAGA	4 cut(s)	114, 347, 350, 418
MfeI	CAATTG	2 cut(s)	732, 901
MhlI	GDGCHC	2 cut(s)	19, 66
MluCI	AATT	4 cut(s)	235, 512, 732, 901
MlyI	GAGTC	1 cut(s)	119
MmeI	TCCRAC	1 cut(s)	711
MslI	CAYNNNNRTG	3 cut(s)	552, 591, 815
MspA1I	CMGCKG	3 cut(s)	36, 829, 911
MspI	CCGG	3 cut(s)	40, 618, 713
MteI	GCGCNGCGC	1 cut(s)	217
MunI	CAATTG	2 cut(s)	732, 901
MvnI	CGCG	3 cut(s)	36, 205, 216
NdeI	CATATG	1 cut(s)	670
NdeII	GATC	7 cut(s)	117, 556, 724, 754, 790, 837, 874
NlaIII	CATG	4 cut(s)	565, 646, 711, 797
NlaIV	GGNNCC	4 cut(s)	65, 297, 496, 717
NmeAIII	GCCGAG	1 cut(s)	139
NmuCI	GTSAC	8 cut(s)	518, 593, 620, 676, 802, 817, 831, 893
NspV	TTCGAA	1 cut(s)	240
PceI	AGGCCT	1 cut(s)	942
PfeI	GAWTC	4 cut(s)	275, 413, 469, 932
PflFI	GACNNNGTC	1 cut(s)	682
PflMI	CCANNNNNTGG	1 cut(s)	577
PkrI	GCNGC	9 cut(s)	38, 181, 202, 218, 825, 828, 910, 913, 916
PleI	GAGTC	1 cut(s)	119
PmaCI	CACGTG	1 cut(s)	437
PmlI	CACGTG	1 cut(s)	437
PpsI	GAGTC	1 cut(s)	119
Ppu21I	YACGTR	1 cut(s)	437
PpuMI	RGGWCCY	1 cut(s)	495
Psp124BI	GAGCTC	1 cut(s)	19
Psp5II	RGGWCCY	1 cut(s)	495
PspCI	CACGTG	1 cut(s)	437
PspN4I	GGNNCC	4 cut(s)	65, 297, 496, 717
PspPI	GGNCC	3 cut(s)	495, 651, 684
PspPPI	RGGWCCY	1 cut(s)	495
PstI	CTGCAG	1 cut(s)	874
PstNI	CAGNNNCTG	2 cut(s)	829, 914
PsyI	GACNNNGTC	1 cut(s)	682
PvuII	CAGCTG	2 cut(s)	829, 911
RsaI	GTAC	2 cut(s)	12, 717
RsaNI	GTAC	2 cut(s)	11, 716
RseI	CAYNNNNRTG	3 cut(s)	552, 591, 815
SacI	GAGCTC	1 cut(s)	19
SacII	CCGCGG	1 cut(s)	37
SatI	GCNGC	9 cut(s)	37, 180, 201, 217, 824, 827, 909, 912, 915
Sau3AI	GATC	7 cut(s)	117, 556, 724, 754, 790, 837, 874
Sau96I	GGNCC	3 cut(s)	495, 651, 684
SchI	GAGTC	1 cut(s)	119
SduI	GDGCHC	2 cut(s)	19, 66
SfaNI	GCATC	3 cut(s)	14, 166, 638
SfcI	CTRYAG	1 cut(s)	870
Sfr303I	CCGCGG	1 cut(s)	37
SfuI	TTCGAA	1 cut(s)	240
SgrBI	CCGCGG	1 cut(s)	37
SinI	GGWCC	3 cut(s)	495, 651, 684
SmiMI	CAYNNNNRTG	3 cut(s)	552, 591, 815
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	4 cut(s)	235, 512, 732, 901
SseBI	AGGCCT	1 cut(s)	942
SsiI	CCGC	9 cut(s)	34, 36, 205, 216, 229, 263, 267, 441, 807
SspMI	CTAG	2 cut(s)	183, 425
SstI	GAGCTC	1 cut(s)	19
StuI	AGGCCT	1 cut(s)	942
StyI	CCWWGG	1 cut(s)	937
TaaI	ACNGT	2 cut(s)	300, 893
TaiI	ACGT	3 cut(s)	439, 579, 627
TaqI	TCGA	7 cut(s)	56, 162, 240, 254, 632, 764, 840
TasI	AATT	4 cut(s)	235, 512, 732, 901
TauI	GCSGC	2 cut(s)	39, 219
TfiI	GAWTC	4 cut(s)	275, 413, 469, 932
TscAI	CASTG	3 cut(s)	598, 764, 896
TseFI	GTSAC	8 cut(s)	518, 593, 620, 676, 802, 817, 831, 893
TseI	GCWGC	7 cut(s)	179, 200, 823, 826, 908, 911, 914
Tsp45I	GTSAC	8 cut(s)	518, 593, 620, 676, 802, 817, 831, 893
TspDTI	ATGAA	3 cut(s)	471, 672, 687
TspRI	CASTG	3 cut(s)	598, 764, 896
Tth111I	GACNNNGTC	1 cut(s)	682
Van91I	CCANNNNNTGG	1 cut(s)	577
VpaK11BI	GGWCC	3 cut(s)	495, 651, 684
XapI	RAATTY	1 cut(s)	512
XmiI	GTMKAC	1 cut(s)	532
XspI	CTAG	2 cut(s)	183, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.