Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0013672

Physical Location & Seq

Genomic Coordinates Reverse (-)

16857467 .. 16858324

Gene Structure 858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g11610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGGTTTGCGCGAACAAAACGACGGCGTACGGAAGAGGAAGAAATCATCGACGAGGGGGCACCACCGGTTCGTGGGGGTGCGGCAGAGGCCGTCCGGGAGGTGGGTCGCGGAGATCAAGGACTCTCTGCAGAAAGTGAGGCTCTGGCTTGGGACTTTTGACACCGCGGAGGACGCGGCTCGTGCCTATGATGATGCTGCCCGAGCACTCCGCGGTGCCAACGCCCGAACCAATTTCGAGCTGCCACAGAGTAATGGGGCCGGCAATGGTGGCGCGGGCGTGGCGGAGAATGTGCCTTTTTCGTTTGAGGCGGTGTGTGGGAATGAGGTGGAAGCTGAGGGGTTGCTGGGTGCACTTAGAGCTAAGTTGCAGGATGGTAAGGTGATAAATCGTGTGCTTCCACAACCACCGCAAGGAAATAGTGGCACTAAAGTGGAGCCGTCTCCGGTTGATCCACGTGGTGCGGTTACTGAAACCGTCAATCCGCGACCGCCCCACATGGAGAATCCAATTGTATTAGATAATCAGTGGCAACTTCAGGTTCACCCAGCACCATCAAACCAAACCATGGTGTGGGCCAACGAGAGCCAAGTAGCATATGAGCAAGTGCAAAATTGGTCCACGTGGCCGAATAACAGTATGCCGTATGTACCAGAACAGTGCTCTATGGAGCTTCCGTTGCCGGCGGTGGGCACGCAGCTTCTGTCACAGATTGATGGTAGTGCTGGTGGTGGTGATGGTGGTGATGGTGGTTGGTGTTCAGATCAGCAGCAGTTTTTGCACTGTGACGGTAGCAATTGGGGAGGAGCTAATGCCAATTGGGATCCTCCTTTTTATGCTTCCTCCGTGCTGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035864 GO:0035865 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048364 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

286

Amino Acids

30.81

Weight (kDa)

5.43

Isoelectric Point (pI)

43.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	23 - 72	1e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013672)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g10260
malus_domestica	MD00G1118900.v1.1 MD06G1125700.v1.1
prunus_persica	Prupe.5G136200_v2.0.a1
pyrus_communis	pycom06g11610 pycom14g11740
rosa_chinensis	RchiOBHm_Chr7g0187951
rosa_laevigata	RLG00000004742
rosa_multiflora	Rmu_sc0015523.1_g000010 Rmu_sc0018017.1_g000002 Rmu_sc0029514.1_g000002
rosa_roxburghii	Rroxscaffold_3G00266900
rosa_rugosa	Rorug06G0486500
rosa_samantha	Rh7AG090800 Rh7BG092400 Rh7CG091700 Rh7DG093200
rosa_wichuraiana	Rw7G007840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	60, 215
AccB7I	CCANNNNNTGG	2 cut(s)	568, 573
AccII	CGCG	7 cut(s)	12, 110, 167, 176, 213, 275, 487
AclWI	GGATC	3 cut(s)	446, 818, 831
AcoI	YGGCCR	1 cut(s)	626
AcuI	CTGAAG	1 cut(s)	521
AcvI	CACGTG	2 cut(s)	458, 624
AdeI	CACNNNGTG	1 cut(s)	461
AfaI	GTAC	2 cut(s)	30, 651
AfiI	CCNNNNNNNGG	7 cut(s)	73, 102, 413, 568, 573, 689, 852
AgeI	ACCGGT	1 cut(s)	66
AleI	CACNNNNGTG	1 cut(s)	431
AluBI	AGCT	6 cut(s)	241, 335, 362, 673, 700, 809
AluI	AGCT	6 cut(s)	241, 335, 362, 673, 700, 809
Alw21I	GWGCWC	3 cut(s)	208, 355, 665
Alw26I	GTCTC	1 cut(s)	447
Alw44I	GTGCAC	1 cut(s)	351
AlwI	GGATC	3 cut(s)	446, 818, 831
AlwNI	CAGNNNCTG	1 cut(s)	703
Ama87I	CYCGRG	1 cut(s)	201
AoxI	GGCC	4 cut(s)	89, 258, 576, 626
ApaLI	GTGCAC	1 cut(s)	351
ApeKI	GCWGC	4 cut(s)	197, 241, 697, 769
AsiGI	ACCGGT	1 cut(s)	66
AspLEI	GCGC	2 cut(s)	12, 275
AspS9I	GGNCC	3 cut(s)	258, 576, 618
AsuC2I	CCSGG	1 cut(s)	97
AsuHPI	GGTGA	4 cut(s)	394, 536, 746, 755
AvaI	CYCGRG	1 cut(s)	201
AvaII	GGWCC	1 cut(s)	618
BaeGI	GKGCMC	3 cut(s)	63, 355, 695
BamHI	GGATCC	1 cut(s)	823
BanI	GGYRCC	2 cut(s)	60, 215
BauI	CACGAG	1 cut(s)	180
BbrPI	CACGTG	2 cut(s)	458, 624
Bbv12I	GWGCWC	3 cut(s)	208, 355, 665
BbvCI	CCTCAGC	1 cut(s)	336
BbvI	GCAGC	4 cut(s)	184, 228, 709, 781
BccI	CCATC	5 cut(s)	368, 562, 710, 731, 740
BceAI	ACGGC	4 cut(s)	40, 76, 424, 628
BcnI	CCSGG	1 cut(s)	97
BcoDI	GTCTC	1 cut(s)	447
BfmI	CTRYAG	1 cut(s)	128
BisI	GCNGC	6 cut(s)	83, 177, 198, 242, 698, 770
BlsI	GCNGC	6 cut(s)	84, 178, 199, 243, 699, 771
Bme1390I	CCNGG	1 cut(s)	97
Bme18I	GGWCC	1 cut(s)	618
BmeT110I	CYCGRG	1 cut(s)	201
BmgT120I	GGNCC	3 cut(s)	258, 576, 618
BmiI	GGNNCC	5 cut(s)	62, 217, 259, 438, 825
BmrFI	CCNGG	1 cut(s)	97
BmsI	GCATC	1 cut(s)	184
Bpu10I	CCTNAGC	1 cut(s)	336
BpuMI	CCSGG	1 cut(s)	97
BsaAI	YACGTR	2 cut(s)	458, 624
BsaJI	CCNNGG	3 cut(s)	165, 211, 567
BsaWI	WCCGGW	2 cut(s)	66, 445
BsaXI	ACNNNNNCTCC	2 cut(s)	662, 692
Bsc4I	CCNNNNNNNGG	7 cut(s)	73, 102, 413, 568, 573, 689, 852
Bse118I	RCCGGY	3 cut(s)	66, 260, 682
Bse3DI	GCAATG	1 cut(s)	271
BseDI	CCNNGG	3 cut(s)	165, 211, 567
BseGI	GGATG	1 cut(s)	379
BseLI	CCNNNNNNNGG	7 cut(s)	73, 102, 413, 568, 573, 689, 852
BseMI	GCAATG	1 cut(s)	271
BseMII	CTCAG	1 cut(s)	327
BseRI	GAGGAG	1 cut(s)	819
BseSI	GKGCMC	3 cut(s)	63, 355, 695
BseXI	GCAGC	4 cut(s)	184, 228, 709, 781
BseYI	CCCAGC	3 cut(s)	346, 547, 850
Bsh1236I	CGCG	7 cut(s)	12, 110, 167, 176, 213, 275, 487
Bsh1285I	CGRYCG	1 cut(s)	491
BshFI	GGCC	4 cut(s)	91, 260, 578, 628
BshNI	GGYRCC	2 cut(s)	60, 215
BshTI	ACCGGT	1 cut(s)	66
BsiEI	CGRYCG	1 cut(s)	491
BsiHKAI	GWGCWC	3 cut(s)	208, 355, 665
BsiHKCI	CYCGRG	1 cut(s)	201
BsiSI	CCGG	5 cut(s)	67, 96, 261, 446, 683
BsiWI	CGTACG	1 cut(s)	28
BslFI	GGGAC	1 cut(s)	166
BslI	CCNNNNNNNGG	7 cut(s)	73, 102, 413, 568, 573, 689, 852
BsmAI	GTCTC	1 cut(s)	447
BsmBI	CGTCTC	1 cut(s)	447
BsmFI	GGGAC	1 cut(s)	166
BsnI	GGCC	4 cut(s)	91, 260, 578, 628
BsoBI	CYCGRG	1 cut(s)	201
Bsp1286I	GDGCHC	5 cut(s)	63, 208, 355, 665, 695
Bsp143I	GATC	4 cut(s)	114, 451, 763, 823
Bsp19I	CCATGG	1 cut(s)	567
BspANI	GGCC	4 cut(s)	91, 260, 578, 628
BspCNI	CTCAG	1 cut(s)	328
BspFNI	CGCG	7 cut(s)	12, 110, 167, 176, 213, 275, 487
BspLI	GGNNCC	5 cut(s)	62, 217, 259, 438, 825
BspMAI	CTGCAG	1 cut(s)	132
BspPI	GGATC	3 cut(s)	446, 818, 831
BspT107I	GGYRCC	2 cut(s)	60, 215
BsrDI	GCAATG	1 cut(s)	271
BsrFI	RCCGGY	3 cut(s)	66, 260, 682
BssAI	RCCGGY	3 cut(s)	66, 260, 682
BssECI	CCNNGG	3 cut(s)	165, 211, 567
BssMI	GATC	4 cut(s)	114, 451, 763, 823
BssSI	CACGAG	1 cut(s)	180
BssT1I	CCWWGG	1 cut(s)	567
Bst2BI	CACGAG	1 cut(s)	180
Bst4CI	ACNGT	5 cut(s)	478, 638, 660, 785, 791
Bst6I	CTCTTC	1 cut(s)	29
BstAPI	GCANNNNNTGC	1 cut(s)	778
BstBAI	YACGTR	2 cut(s)	458, 624
BstC8I	GCNNGC	4 cut(s)	262, 277, 684, 695
BstDEI	CTNAG	3 cut(s)	336, 356, 363
BstDSI	CCRYGG	3 cut(s)	165, 211, 567
BstF5I	GGATG	1 cut(s)	379
BstFNI	CGCG	7 cut(s)	12, 110, 167, 176, 213, 275, 487
BstHHI	GCGC	2 cut(s)	12, 275
BstKTI	GATC	4 cut(s)	117, 454, 766, 826
BstMAI	GTCTC	1 cut(s)	447
BstMBI	GATC	4 cut(s)	114, 451, 763, 823
BstMCI	CGRYCG	1 cut(s)	491
BstMWI	GCNNNNNNNGC	9 cut(s)	88, 173, 182, 203, 270, 281, 359, 679, 778
BstSCI	CCNGG	1 cut(s)	95
BstSFI	CTRYAG	1 cut(s)	128
BstSLI	GKGCMC	3 cut(s)	63, 355, 695
BstUI	CGCG	7 cut(s)	12, 110, 167, 176, 213, 275, 487
BstV1I	GCAGC	4 cut(s)	184, 228, 709, 781
BstX2I	RGATCY	1 cut(s)	823
BstYI	RGATCY	1 cut(s)	823
BsuRI	GGCC	4 cut(s)	91, 260, 578, 628
BtgI	CCRYGG	3 cut(s)	165, 211, 567
BtsCI	GGATG	1 cut(s)	379
BtsIMutI	CAGTG	3 cut(s)	533, 665, 781
Cac8I	GCNNGC	4 cut(s)	262, 277, 684, 695
CaiI	CAGNNNCTG	1 cut(s)	703
CfoI	GCGC	2 cut(s)	12, 275
Cfr10I	RCCGGY	3 cut(s)	66, 260, 682
Cfr13I	GGNCC	3 cut(s)	258, 576, 618
Cfr42I	CCGCGG	2 cut(s)	168, 214
CseI	GACGC	1 cut(s)	182
Csp6I	GTAC	2 cut(s)	29, 650
CspAI	ACCGGT	1 cut(s)	66
CviAII	CATG	2 cut(s)	499, 568
CviQI	GTAC	2 cut(s)	29, 650
DdeI	CTNAG	3 cut(s)	336, 356, 363
DpnI	GATC	4 cut(s)	116, 453, 765, 825
DpnII	GATC	4 cut(s)	114, 451, 763, 823
DraIII	CACNNNGTG	1 cut(s)	461
EaeI	YGGCCR	1 cut(s)	626
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
EciI	GGCGGA	1 cut(s)	299
Eco130I	CCWWGG	1 cut(s)	567
Eco47I	GGWCC	1 cut(s)	618
Eco57I	CTGAAG	1 cut(s)	521
Eco72I	CACGTG	2 cut(s)	458, 624
Eco88I	CYCGRG	1 cut(s)	201
EcoT14I	CCWWGG	1 cut(s)	567
ErhI	CCWWGG	1 cut(s)	567
Esp3I	CGTCTC	1 cut(s)	447
FaeI	CATG	2 cut(s)	502, 571
FaiI	YATR	9 cut(s)	189, 500, 569, 598, 600, 641, 648, 668, 837
FaqI	GGGAC	1 cut(s)	166
FatI	CATG	2 cut(s)	498, 567
FauI	CCCGC	1 cut(s)	268
FauNDI	CATATG	1 cut(s)	598
Fnu4HI	GCNGC	6 cut(s)	83, 177, 198, 242, 698, 770
FokI	GGATG	1 cut(s)	386
Fsp4HI	GCNGC	6 cut(s)	83, 177, 198, 242, 698, 770
GlaI	GCGC	2 cut(s)	11, 274
GluI	GCNGC	6 cut(s)	83, 177, 198, 242, 698, 770
GsaI	CCCAGC	3 cut(s)	350, 551, 854
HaeIII	GGCC	4 cut(s)	91, 260, 578, 628
HapII	CCGG	5 cut(s)	67, 96, 261, 446, 683
HgaI	GACGC	1 cut(s)	182
HhaI	GCGC	2 cut(s)	12, 275
Hin1II	CATG	2 cut(s)	502, 571
Hin6I	GCGC	2 cut(s)	10, 273
HinP1I	GCGC	2 cut(s)	10, 273
HinfI	GANTC	2 cut(s)	122, 505
HpaII	CCGG	5 cut(s)	67, 96, 261, 446, 683
HphI	GGTGA	4 cut(s)	394, 536, 746, 755
Hpy166II	GTNNAC	3 cut(s)	353, 544, 621
Hpy188I	TCNGA	1 cut(s)	763
Hpy8I	GTNNAC	3 cut(s)	353, 544, 621
Hpy99I	CGWCG	2 cut(s)	26, 55
HpyCH4III	ACNGT	5 cut(s)	478, 638, 660, 785, 791
HpyCH4IV	ACGT	2 cut(s)	457, 623
HpyCH4V	TGCA	5 cut(s)	130, 353, 370, 610, 781
HpyF10VI	GCNNNNNNNGC	9 cut(s)	88, 173, 182, 203, 270, 281, 359, 679, 778
HpyF3I	CTNAG	3 cut(s)	336, 356, 363
HpySE526I	ACGT	2 cut(s)	457, 623
Hsp92II	CATG	2 cut(s)	502, 571
HspAI	GCGC	2 cut(s)	10, 273
KroI	GCCGGC	2 cut(s)	260, 682
KroNI	GCCGGC	2 cut(s)	262, 684
KspI	CCGCGG	2 cut(s)	168, 214
Kzo9I	GATC	4 cut(s)	114, 451, 763, 823
LmnI	GCTCC	3 cut(s)	436, 670, 806
Lsp1109I	GCAGC	4 cut(s)	184, 228, 709, 781
LweI	GCATC	1 cut(s)	184
MaeII	ACGT	2 cut(s)	457, 623
MaeIII	GTNAC	3 cut(s)	466, 705, 785
MalI	GATC	4 cut(s)	116, 453, 765, 825
MboI	GATC	4 cut(s)	114, 451, 763, 823
MboII	GAAGA	2 cut(s)	46, 52
MfeI	CAATTG	3 cut(s)	510, 796, 817
MflI	RGATCY	1 cut(s)	823
MhlI	GDGCHC	5 cut(s)	63, 208, 355, 665, 695
MluCI	AATT	5 cut(s)	232, 510, 613, 796, 817
MlyI	GAGTC	1 cut(s)	116
MroNI	GCCGGC	2 cut(s)	260, 682
MslI	CAYNNNNRTG	1 cut(s)	431
MspA1I	CMGCKG	2 cut(s)	167, 213
MspI	CCGG	5 cut(s)	67, 96, 261, 446, 683
MspR9I	CCNGG	1 cut(s)	97
MunI	CAATTG	3 cut(s)	510, 796, 817
MvnI	CGCG	7 cut(s)	12, 110, 167, 176, 213, 275, 487
MwoI	GCNNNNNNNGC	9 cut(s)	88, 173, 182, 203, 270, 281, 359, 679, 778
NaeI	GCCGGC	2 cut(s)	262, 684
NciI	CCSGG	1 cut(s)	97
NcoI	CCATGG	1 cut(s)	567
NdeI	CATATG	1 cut(s)	598
NdeII	GATC	4 cut(s)	114, 451, 763, 823
NgoMIV	GCCGGC	2 cut(s)	260, 682
NlaIII	CATG	2 cut(s)	502, 571
NlaIV	GGNNCC	5 cut(s)	62, 217, 259, 438, 825
NmuCI	GTSAC	2 cut(s)	705, 785
OliI	CACNNNNGTG	1 cut(s)	431
PdiI	GCCGGC	2 cut(s)	262, 684
PfeI	GAWTC	1 cut(s)	505
Pfl23II	CGTACG	1 cut(s)	28
PflMI	CCANNNNNTGG	2 cut(s)	568, 573
PfoI	TCCNGGA	1 cut(s)	95
PinAI	ACCGGT	1 cut(s)	66
PkrI	GCNGC	6 cut(s)	84, 178, 199, 243, 699, 771
PleI	GAGTC	1 cut(s)	116
PmaCI	CACGTG	2 cut(s)	458, 624
PmlI	CACGTG	2 cut(s)	458, 624
PpsI	GAGTC	1 cut(s)	116
Ppu21I	YACGTR	2 cut(s)	458, 624
PspCI	CACGTG	2 cut(s)	458, 624
PspFI	CCCAGC	3 cut(s)	346, 547, 850
PspLI	CGTACG	1 cut(s)	28
PspN4I	GGNNCC	5 cut(s)	62, 217, 259, 438, 825
PspPI	GGNCC	3 cut(s)	258, 576, 618
PstI	CTGCAG	1 cut(s)	132
PstNI	CAGNNNCTG	1 cut(s)	703
PsuI	RGATCY	1 cut(s)	823
RsaI	GTAC	2 cut(s)	30, 651
RsaNI	GTAC	2 cut(s)	29, 650
RseI	CAYNNNNRTG	1 cut(s)	431
SacII	CCGCGG	2 cut(s)	168, 214
SatI	GCNGC	6 cut(s)	83, 177, 198, 242, 698, 770
Sau3AI	GATC	4 cut(s)	114, 451, 763, 823
Sau96I	GGNCC	3 cut(s)	258, 576, 618
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	1 cut(s)	97
SduI	GDGCHC	5 cut(s)	63, 208, 355, 665, 695
SfaNI	GCATC	1 cut(s)	184
SfcI	CTRYAG	1 cut(s)	128
Sfr303I	CCGCGG	2 cut(s)	168, 214
SgrBI	CCGCGG	2 cut(s)	168, 214
SinI	GGWCC	1 cut(s)	618
SmiMI	CAYNNNNRTG	1 cut(s)	431
Sse9I	AATT	5 cut(s)	232, 510, 613, 796, 817
StyD4I	CCNGG	1 cut(s)	95
StyI	CCWWGG	1 cut(s)	567
TaaI	ACNGT	5 cut(s)	478, 638, 660, 785, 791
TaiI	ACGT	2 cut(s)	460, 626
TaqI	TCGA	2 cut(s)	50, 237
TasI	AATT	5 cut(s)	232, 510, 613, 796, 817
TauI	GCSGC	2 cut(s)	85, 179
TfiI	GAWTC	1 cut(s)	505
TscAI	CASTG	3 cut(s)	533, 665, 788
TseFI	GTSAC	2 cut(s)	705, 785
TseI	GCWGC	4 cut(s)	197, 241, 697, 769
Tsp45I	GTSAC	2 cut(s)	705, 785
TspGWI	ACGGA	3 cut(s)	46, 666, 835
TspRI	CASTG	3 cut(s)	533, 665, 788
Van91I	CCANNNNNTGG	2 cut(s)	568, 573
VneI	GTGCAC	1 cut(s)	351
VpaK11BI	GGWCC	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.