Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0013672

Physical Location & Seq

Genomic Coordinates Reverse (-)

26773748 .. 26774617

Gene Structure 870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1125700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGGTTTGCGCGAACAAAACGACGGCGTACGGAGGAGGAAGAAGTCATCGACGAGGGGGCACCACCGGTTCGTGGGGGTGCGGCAGAGGCCGTCCGGGAGGTGGGTCGCAGAGATCAAGGACTCTCTGCAGAAAGTGAGGCTCTGGCTTGGGACTTTTGACACCGCAGAGGACGCGGCTCGTGCCTATGATGAGGCTGCCCGAGCACTCCGCGGTGTCAACGCCCGAACCAATTTCGAGCTGCCACAGAGTAATGGGGCCGGAAATGGTGGCGCGGGCGTGGCGGAGAATGTGCCTTTTTCGTTTGAGGCGGTGTGTGGGAATGAGGTGGAAGCTGAGGGGTTGCTGGGTGCACTTAGAGCTAAGCTGCAGGATGGTAAGGTGATAAATTGTGTGCTTCCACAACCACCACAAGGAAATAGTGGCACTAAAGCGGAGCCGTCTCCGGTTGATCCACGTGGTGCGGTGGCGGAATCCGTCAACCTGCCACCACCCCACAAGGACTATCCAATTGTATTAGATAATCAGTGGCAACTTCAGGTTCACCCAGCACCATCAAACCAAACCATGGTGTGGGCCAACGAGAGCCAAGTAGCATATGAGCAAGTGCATAATTGGTCCACGTGGCCGAATAACAGTATGCCGTATGTACCAGAACAGTGCTCTATGGAGCTTCCGTTGCCGGCGGTGGGCACGCAGCTTCTGTCACAGATTGATGGTAGTGGTGGTGGCGGCGATGGTGGTTGGTGTTCAGATCAGCAGCAGTTTTTGCACTGTGACGGTAGCAACTGGGGAGGAGCTAATGCCAATTGGGATCCTCCTTTTTATGCTTCCTCTGTGCGGGGTGATGGGATCATATCATATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035864 GO:0035865 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048364 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

290

Amino Acids

31.31

Weight (kDa)

5.55

Isoelectric Point (pI)

49.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	23 - 72	3.7e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013672)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g10260
malus_domestica	MD00G1118900.v1.1 MD06G1125700.v1.1
prunus_persica	Prupe.5G136200_v2.0.a1
pyrus_communis	pycom06g11610 pycom14g11740
rosa_chinensis	RchiOBHm_Chr7g0187951
rosa_laevigata	RLG00000004742
rosa_multiflora	Rmu_sc0015523.1_g000010 Rmu_sc0018017.1_g000002 Rmu_sc0029514.1_g000002
rosa_roxburghii	Rroxscaffold_3G00266900
rosa_rugosa	Rorug06G0486500
rosa_samantha	Rh7AG090800 Rh7BG092400 Rh7CG091700 Rh7DG093200
rosa_wichuraiana	Rw7G007840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	492
AccB1I	GGYRCC	1 cut(s)	60
AccB7I	CCANNNNNTGG	2 cut(s)	568, 573
AccII	CGCG	4 cut(s)	12, 176, 213, 275
AclWI	GGATC	4 cut(s)	446, 809, 822, 860
AcoI	YGGCCR	1 cut(s)	626
AcuI	CTGAAG	1 cut(s)	521
AcvI	CACGTG	2 cut(s)	458, 624
AdeI	CACNNNGTG	1 cut(s)	461
AfaI	GTAC	2 cut(s)	30, 651
AfiI	CCNNNNNNNGG	7 cut(s)	73, 102, 413, 568, 573, 689, 840
AgeI	ACCGGT	1 cut(s)	66
AluBI	AGCT	7 cut(s)	241, 335, 362, 367, 673, 700, 800
AluI	AGCT	7 cut(s)	241, 335, 362, 367, 673, 700, 800
Alw21I	GWGCWC	3 cut(s)	208, 355, 665
Alw26I	GTCTC	1 cut(s)	447
Alw44I	GTGCAC	1 cut(s)	351
AlwI	GGATC	4 cut(s)	446, 809, 822, 860
AlwNI	CAGNNNCTG	1 cut(s)	703
Ama87I	CYCGRG	1 cut(s)	201
AoxI	GGCC	4 cut(s)	89, 258, 576, 626
ApaLI	GTGCAC	1 cut(s)	351
ApeKI	GCWGC	5 cut(s)	197, 241, 367, 697, 760
AsiGI	ACCGGT	1 cut(s)	66
AspLEI	GCGC	2 cut(s)	12, 275
AspS9I	GGNCC	3 cut(s)	258, 576, 618
AsuC2I	CCSGG	1 cut(s)	97
AsuHPI	GGTGA	3 cut(s)	394, 536, 857
AvaI	CYCGRG	1 cut(s)	201
AvaII	GGWCC	1 cut(s)	618
BaeGI	GKGCMC	3 cut(s)	63, 355, 695
BamHI	GGATCC	1 cut(s)	814
BanI	GGYRCC	1 cut(s)	60
BauI	CACGAG	1 cut(s)	180
BbrPI	CACGTG	2 cut(s)	458, 624
Bbv12I	GWGCWC	3 cut(s)	208, 355, 665
BbvCI	CCTCAGC	1 cut(s)	336
BbvI	GCAGC	5 cut(s)	184, 228, 354, 709, 772
BccI	CCATC	5 cut(s)	368, 562, 710, 731, 842
BceAI	ACGGC	4 cut(s)	40, 76, 424, 628
BcnI	CCSGG	1 cut(s)	97
BcoDI	GTCTC	1 cut(s)	447
BfmI	CTRYAG	2 cut(s)	128, 368
BfuAI	ACCTGC	1 cut(s)	492
BisI	GCNGC	8 cut(s)	83, 177, 198, 242, 368, 698, 733, 761
BlpI	GCTNAGC	1 cut(s)	363
BlsI	GCNGC	8 cut(s)	84, 178, 199, 243, 369, 699, 734, 762
Bme1390I	CCNGG	1 cut(s)	97
Bme18I	GGWCC	1 cut(s)	618
BmeT110I	CYCGRG	1 cut(s)	201
BmgT120I	GGNCC	3 cut(s)	258, 576, 618
BmiI	GGNNCC	4 cut(s)	62, 259, 438, 816
BmrFI	CCNGG	1 cut(s)	97
BmrI	ACTGGG	1 cut(s)	799
BmuI	ACTGGG	1 cut(s)	799
Bpu10I	CCTNAGC	1 cut(s)	336
Bpu1102I	GCTNAGC	1 cut(s)	363
BpuMI	CCSGG	1 cut(s)	97
BsaAI	YACGTR	2 cut(s)	458, 624
BsaJI	CCNNGG	2 cut(s)	211, 567
BsaWI	WCCGGW	2 cut(s)	66, 445
BsaXI	ACNNNNNCTCC	2 cut(s)	662, 692
Bsc4I	CCNNNNNNNGG	7 cut(s)	73, 102, 413, 568, 573, 689, 840
Bse118I	RCCGGY	2 cut(s)	66, 682
Bse1I	ACTGG	1 cut(s)	794
BseDI	CCNNGG	2 cut(s)	211, 567
BseGI	GGATG	1 cut(s)	379
BseLI	CCNNNNNNNGG	7 cut(s)	73, 102, 413, 568, 573, 689, 840
BseMII	CTCAG	1 cut(s)	327
BseNI	ACTGG	1 cut(s)	794
BseRI	GAGGAG	2 cut(s)	49, 810
BseSI	GKGCMC	3 cut(s)	63, 355, 695
BseXI	GCAGC	5 cut(s)	184, 228, 354, 709, 772
BseYI	CCCAGC	2 cut(s)	346, 547
Bsh1236I	CGCG	4 cut(s)	12, 176, 213, 275
BshFI	GGCC	4 cut(s)	91, 260, 578, 628
BshNI	GGYRCC	1 cut(s)	60
BshTI	ACCGGT	1 cut(s)	66
BsiHKAI	GWGCWC	3 cut(s)	208, 355, 665
BsiHKCI	CYCGRG	1 cut(s)	201
BsiSI	CCGG	5 cut(s)	67, 96, 261, 446, 683
BsiWI	CGTACG	1 cut(s)	28
BslFI	GGGAC	1 cut(s)	166
BslI	CCNNNNNNNGG	7 cut(s)	73, 102, 413, 568, 573, 689, 840
BsmAI	GTCTC	1 cut(s)	447
BsmBI	CGTCTC	1 cut(s)	447
BsmFI	GGGAC	1 cut(s)	166
BsnI	GGCC	4 cut(s)	91, 260, 578, 628
BsoBI	CYCGRG	1 cut(s)	201
Bsp1286I	GDGCHC	5 cut(s)	63, 208, 355, 665, 695
Bsp143I	GATC	5 cut(s)	114, 451, 754, 814, 852
Bsp1720I	GCTNAGC	1 cut(s)	363
Bsp19I	CCATGG	1 cut(s)	567
BspANI	GGCC	4 cut(s)	91, 260, 578, 628
BspCNI	CTCAG	1 cut(s)	328
BspFNI	CGCG	4 cut(s)	12, 176, 213, 275
BspLI	GGNNCC	4 cut(s)	62, 259, 438, 816
BspMAI	CTGCAG	2 cut(s)	132, 372
BspMI	ACCTGC	1 cut(s)	492
BspPI	GGATC	4 cut(s)	446, 809, 822, 860
BspT107I	GGYRCC	1 cut(s)	60
BsrFI	RCCGGY	2 cut(s)	66, 682
BsrI	ACTGG	1 cut(s)	794
BssAI	RCCGGY	2 cut(s)	66, 682
BssECI	CCNNGG	2 cut(s)	211, 567
BssMI	GATC	5 cut(s)	114, 451, 754, 814, 852
BssSI	CACGAG	1 cut(s)	180
BssT1I	CCWWGG	1 cut(s)	567
Bst2BI	CACGAG	1 cut(s)	180
Bst4CI	ACNGT	4 cut(s)	638, 660, 776, 782
BstAPI	GCANNNNNTGC	1 cut(s)	769
BstBAI	YACGTR	2 cut(s)	458, 624
BstC8I	GCNNGC	3 cut(s)	277, 684, 695
BstDEI	CTNAG	3 cut(s)	336, 356, 363
BstDSI	CCRYGG	2 cut(s)	211, 567
BstF5I	GGATG	1 cut(s)	379
BstFNI	CGCG	4 cut(s)	12, 176, 213, 275
BstHHI	GCGC	2 cut(s)	12, 275
BstKTI	GATC	5 cut(s)	117, 454, 757, 817, 855
BstMAI	GTCTC	1 cut(s)	447
BstMBI	GATC	5 cut(s)	114, 451, 754, 814, 852
BstMWI	GCNNNNNNNGC	8 cut(s)	88, 173, 182, 203, 281, 359, 679, 769
BstSCI	CCNGG	1 cut(s)	95
BstSFI	CTRYAG	2 cut(s)	128, 368
BstSLI	GKGCMC	3 cut(s)	63, 355, 695
BstUI	CGCG	4 cut(s)	12, 176, 213, 275
BstV1I	GCAGC	5 cut(s)	184, 228, 354, 709, 772
BstX2I	RGATCY	1 cut(s)	814
BstYI	RGATCY	1 cut(s)	814
BsuRI	GGCC	4 cut(s)	91, 260, 578, 628
BtgI	CCRYGG	2 cut(s)	211, 567
BtgZI	GCGATG	1 cut(s)	750
BtsCI	GGATG	1 cut(s)	379
BtsIMutI	CAGTG	3 cut(s)	533, 665, 772
BveI	ACCTGC	1 cut(s)	492
Cac8I	GCNNGC	3 cut(s)	277, 684, 695
CaiI	CAGNNNCTG	1 cut(s)	703
CfoI	GCGC	2 cut(s)	12, 275
Cfr10I	RCCGGY	2 cut(s)	66, 682
Cfr13I	GGNCC	3 cut(s)	258, 576, 618
Cfr42I	CCGCGG	1 cut(s)	214
CseI	GACGC	1 cut(s)	182
Csp6I	GTAC	2 cut(s)	29, 650
CspAI	ACCGGT	1 cut(s)	66
CviAII	CATG	1 cut(s)	568
CviQI	GTAC	2 cut(s)	29, 650
DdeI	CTNAG	3 cut(s)	336, 356, 363
DpnI	GATC	5 cut(s)	116, 453, 756, 816, 854
DpnII	GATC	5 cut(s)	114, 451, 754, 814, 852
DraIII	CACNNNGTG	1 cut(s)	461
EaeI	YGGCCR	1 cut(s)	626
EciI	GGCGGA	2 cut(s)	299, 485
Eco130I	CCWWGG	1 cut(s)	567
Eco47I	GGWCC	1 cut(s)	618
Eco57I	CTGAAG	1 cut(s)	521
Eco72I	CACGTG	2 cut(s)	458, 624
Eco88I	CYCGRG	1 cut(s)	201
EcoT14I	CCWWGG	1 cut(s)	567
ErhI	CCWWGG	1 cut(s)	567
Esp3I	CGTCTC	1 cut(s)	447
FaeI	CATG	1 cut(s)	571
FaqI	GGGAC	1 cut(s)	166
FatI	CATG	1 cut(s)	567
FauI	CCCGC	2 cut(s)	268, 834
FauNDI	CATATG	1 cut(s)	598
Fnu4HI	GCNGC	8 cut(s)	83, 177, 198, 242, 368, 698, 733, 761
FokI	GGATG	1 cut(s)	386
Fsp4HI	GCNGC	8 cut(s)	83, 177, 198, 242, 368, 698, 733, 761
GlaI	GCGC	2 cut(s)	11, 274
GluI	GCNGC	8 cut(s)	83, 177, 198, 242, 368, 698, 733, 761
GsaI	CCCAGC	2 cut(s)	350, 551
HaeIII	GGCC	4 cut(s)	91, 260, 578, 628
HapII	CCGG	5 cut(s)	67, 96, 261, 446, 683
HgaI	GACGC	1 cut(s)	182
HhaI	GCGC	2 cut(s)	12, 275
Hin1II	CATG	1 cut(s)	571
Hin6I	GCGC	2 cut(s)	10, 273
HinP1I	GCGC	2 cut(s)	10, 273
HincII	GTYRAC	2 cut(s)	220, 481
HindII	GTYRAC	2 cut(s)	220, 481
HinfI	GANTC	2 cut(s)	122, 473
HpaII	CCGG	5 cut(s)	67, 96, 261, 446, 683
HphI	GGTGA	3 cut(s)	394, 536, 857
Hpy166II	GTNNAC	5 cut(s)	220, 353, 481, 544, 621
Hpy188I	TCNGA	1 cut(s)	754
Hpy8I	GTNNAC	5 cut(s)	220, 353, 481, 544, 621
Hpy99I	CGWCG	2 cut(s)	26, 55
HpyCH4III	ACNGT	4 cut(s)	638, 660, 776, 782
HpyCH4IV	ACGT	2 cut(s)	457, 623
HpyCH4V	TGCA	5 cut(s)	130, 353, 370, 610, 772
HpyF10VI	GCNNNNNNNGC	8 cut(s)	88, 173, 182, 203, 281, 359, 679, 769
HpyF3I	CTNAG	3 cut(s)	336, 356, 363
HpySE526I	ACGT	2 cut(s)	457, 623
Hsp92II	CATG	1 cut(s)	571
HspAI	GCGC	2 cut(s)	10, 273
KroI	GCCGGC	1 cut(s)	682
KroNI	GCCGGC	1 cut(s)	684
KspI	CCGCGG	1 cut(s)	214
Kzo9I	GATC	5 cut(s)	114, 451, 754, 814, 852
LmnI	GCTCC	3 cut(s)	436, 670, 797
Lsp1109I	GCAGC	5 cut(s)	184, 228, 354, 709, 772
MaeII	ACGT	2 cut(s)	457, 623
MaeIII	GTNAC	2 cut(s)	705, 776
MalI	GATC	5 cut(s)	116, 453, 756, 816, 854
MboI	GATC	5 cut(s)	114, 451, 754, 814, 852
MboII	GAAGA	1 cut(s)	52
MfeI	CAATTG	2 cut(s)	510, 808
MflI	RGATCY	1 cut(s)	814
MhlI	GDGCHC	5 cut(s)	63, 208, 355, 665, 695
MluCI	AATT	6 cut(s)	232, 388, 510, 613, 808, 865
MlyI	GAGTC	1 cut(s)	116
MroNI	GCCGGC	1 cut(s)	682
MseI	TTAA	1 cut(s)	868
MspA1I	CMGCKG	1 cut(s)	213
MspI	CCGG	5 cut(s)	67, 96, 261, 446, 683
MspR9I	CCNGG	1 cut(s)	97
MunI	CAATTG	2 cut(s)	510, 808
MvnI	CGCG	4 cut(s)	12, 176, 213, 275
MwoI	GCNNNNNNNGC	8 cut(s)	88, 173, 182, 203, 281, 359, 679, 769
NaeI	GCCGGC	1 cut(s)	684
NciI	CCSGG	1 cut(s)	97
NcoI	CCATGG	1 cut(s)	567
NdeI	CATATG	1 cut(s)	598
NdeII	GATC	5 cut(s)	114, 451, 754, 814, 852
NgoMIV	GCCGGC	1 cut(s)	682
NlaIII	CATG	1 cut(s)	571
NlaIV	GGNNCC	4 cut(s)	62, 259, 438, 816
NmuCI	GTSAC	2 cut(s)	705, 776
PdiI	GCCGGC	1 cut(s)	684
PfeI	GAWTC	1 cut(s)	473
Pfl23II	CGTACG	1 cut(s)	28
PflMI	CCANNNNNTGG	2 cut(s)	568, 573
PfoI	TCCNGGA	1 cut(s)	95
PinAI	ACCGGT	1 cut(s)	66
PkrI	GCNGC	8 cut(s)	84, 178, 199, 243, 369, 699, 734, 762
PleI	GAGTC	1 cut(s)	116
PmaCI	CACGTG	2 cut(s)	458, 624
PmlI	CACGTG	2 cut(s)	458, 624
PpsI	GAGTC	1 cut(s)	116
Ppu21I	YACGTR	2 cut(s)	458, 624
PspCI	CACGTG	2 cut(s)	458, 624
PspFI	CCCAGC	2 cut(s)	346, 547
PspLI	CGTACG	1 cut(s)	28
PspN4I	GGNNCC	4 cut(s)	62, 259, 438, 816
PspPI	GGNCC	3 cut(s)	258, 576, 618
PstI	CTGCAG	2 cut(s)	132, 372
PstNI	CAGNNNCTG	1 cut(s)	703
PsuI	RGATCY	1 cut(s)	814
RsaI	GTAC	2 cut(s)	30, 651
RsaNI	GTAC	2 cut(s)	29, 650
SacII	CCGCGG	1 cut(s)	214
SaqAI	TTAA	1 cut(s)	868
SatI	GCNGC	8 cut(s)	83, 177, 198, 242, 368, 698, 733, 761
Sau3AI	GATC	5 cut(s)	114, 451, 754, 814, 852
Sau96I	GGNCC	3 cut(s)	258, 576, 618
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	1 cut(s)	97
SduI	GDGCHC	5 cut(s)	63, 208, 355, 665, 695
SfcI	CTRYAG	2 cut(s)	128, 368
Sfr303I	CCGCGG	1 cut(s)	214
SgrBI	CCGCGG	1 cut(s)	214
SinI	GGWCC	1 cut(s)	618
Sse9I	AATT	6 cut(s)	232, 388, 510, 613, 808, 865
StyD4I	CCNGG	1 cut(s)	95
StyI	CCWWGG	1 cut(s)	567
TaaI	ACNGT	4 cut(s)	638, 660, 776, 782
TaiI	ACGT	2 cut(s)	460, 626
TaqI	TCGA	2 cut(s)	50, 237
TasI	AATT	6 cut(s)	232, 388, 510, 613, 808, 865
TauI	GCSGC	3 cut(s)	85, 179, 735
TfiI	GAWTC	1 cut(s)	473
Tru1I	TTAA	1 cut(s)	868
Tru9I	TTAA	1 cut(s)	868
TscAI	CASTG	3 cut(s)	533, 665, 779
TseFI	GTSAC	2 cut(s)	705, 776
TseI	GCWGC	5 cut(s)	197, 241, 367, 697, 760
Tsp45I	GTSAC	2 cut(s)	705, 776
TspGWI	ACGGA	3 cut(s)	46, 466, 666
TspRI	CASTG	3 cut(s)	533, 665, 779
Van91I	CCANNNNNTGG	2 cut(s)	568, 573
VneI	GTGCAC	1 cut(s)	351
VpaK11BI	GGWCC	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.