Rh7BG092400

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0013672
Physical Location & Seq
Reverse (-)
6824824 .. 6826283
1460 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG092400.1

Sequence Viewer

Length: 1053 bp
ATGTTTTTCTGCATTATAAATCGACCACCACTTCATACCTCTCGGTTTTCAAATCAAGCTAAGCTAGAGCTTACCATGGCAGCTGTACGAGCTCAAAACGATGGCGTCCGCGGCCGGAGGAAGTCATCGTCGAGAGGGCACCATAGGTTTGTGGGAGTGAGGCAGAGGCCGTCGGGAAGATGGGTGGCCGAGATCAAAGACTCGTTGCAAAAGGTCAGGCTTTGGCTTGGCACTTTCGATACTGCTGAGGATGCTGCTAGGGCTTATGATGACGCTGCGCGGACTTTGCGCGGCCCAAATGCCCGCACCAATTTCGAACTGCCTCAATCGGATGGTGCGGGCGTGGGAGATTCGGGGATGGAAAATGTGGAACCGTTTTCGTTTGAGGATGTTTGTGGCAATGGAGCTGAAGAAGATGGCTTGCTTGGTGCGCTCAAGGCCAAGTTGCTTGATGGCAAGGGATTTAGTCGGGTGCAAGAGAAGATTGATTCGTCTCCTCTAGTTGTGCCACGTGGCGGTGGGTTTGGATTTGCAAACCCTCCGAATCAGCAGGGTTCATATATAGCAGAGTCCTCAAAGGAAAAAAAATTTAGTCACACTCGGTGTATACAACCTCCCTCTCACAAAAATGATCACGTGACAGGCCACGACGTGGTATTCGATATCAGTGACCAGACAGAGGTGGCCGTGTCCGGTCACGTTGCATCGAACTCGGGCATGGTGTGGACCAATGAACCTCCAGCATATGAAGTGACTTGGTCCAACACACTTCCTATGCCTACATGGCCGGTACCAACTGATCAGTCAATTGTGAGTATGTCATATACAGATCAGTGTTCGATGGAGTTGCCAACAACAAGTAGAGATCATGGTAAAGTGACCGCCGTAGGCTTGACGCAGCAGCTGTCACAGATCGAAGGAGCAATGGGAGGTGGTGCTTGGTCTGCAGATCAGCAATATATGCACTGTGACAACAATTGGGCAGCTGCTGCTAACGGCACTTGGGAATCCCAAGGCCTCTTCTATCAGCCCTCTGTTTCTGGGGTGATTTGA

Protein Analysis

350

Amino Acids

38.1

Weight (kDa)

5.94

Isoelectric Point (pI)

42.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 49 - 98 1.6e-13 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 17
Acc65I GGTACC 1 cut(s) 790
AccB1I GGYRCC 2 cut(s) 138, 790
AccB7I CCANNNNNTGG 1 cut(s) 652
AccI GTMKAC 1 cut(s) 607
AccII CGCG 3 cut(s) 111, 280, 291
AciI CCGC 8 cut(s) 109, 111, 280, 291, 304, 338, 516, 882
AcoI YGGCCR 4 cut(s) 112, 186, 684, 785
AcsI RAATTY 1 cut(s) 587
AcuI CTGAAG 1 cut(s) 429
AcvI CACGTG 2 cut(s) 512, 637
AcyI GRCGYC 1 cut(s) 105
AdeI CACNNNGTG 2 cut(s) 603, 652
AfaI GTAC 2 cut(s) 87, 792
AfiI CCNNNNNNNGG 3 cut(s) 515, 652, 679
AgsI TTSAA 1 cut(s) 51
AjiI CACGTC 1 cut(s) 652
AluBI AGCT 8 cut(s) 59, 64, 70, 83, 92, 407, 904, 986
AluI AGCT 8 cut(s) 59, 64, 70, 83, 92, 407, 904, 986
Alw21I GWGCWC 1 cut(s) 94
Alw26I GTCTC 1 cut(s) 498
AlwNI CAGNNNCTG 2 cut(s) 904, 989
Ama87I CYCGRG 1 cut(s) 712
AoxI GGCC 9 cut(s) 112, 167, 186, 292, 438, 643, 684, 785, 1015
ApeKI GCWGC 8 cut(s) 80, 254, 275, 898, 901, 983, 986, 989
ApoI RAATTY 1 cut(s) 587
ArsI GACNNNNNNTTYG 2 cut(s) 641, 673
Asp718I GGTACC 1 cut(s) 790
AspLEI GCGC 3 cut(s) 280, 291, 433
AspS9I GGNCC 3 cut(s) 293, 726, 759
AsuII TTCGAA 1 cut(s) 315
AvaI CYCGRG 1 cut(s) 712
AvaII GGWCC 2 cut(s) 726, 759
BaeGI GKGCMC 1 cut(s) 141
BanI GGYRCC 2 cut(s) 138, 790
BanII GRGCYC 1 cut(s) 94
BbrPI CACGTG 2 cut(s) 512, 637
Bbv12I GWGCWC 1 cut(s) 94
BbvCI CCTCAGC 1 cut(s) 246
BbvI GCAGC 8 cut(s) 92, 241, 262, 910, 913, 973, 976, 995
BccI CCATC 7 cut(s) 95, 174, 326, 352, 410, 446, 835
BceAI ACGGC 4 cut(s) 154, 671, 869, 1012
BcgI CGANNNNNNTGC 6 cut(s) 295, 329, 693, 727, 829, 863
BclI TGATCA 2 cut(s) 631, 799
BcoDI GTCTC 1 cut(s) 498
BfaI CTAG 3 cut(s) 65, 258, 500
BfmI CTRYAG 1 cut(s) 945
BglI GCCNNNNNGGC 1 cut(s) 784
BlpI GCTNAGC 1 cut(s) 60
Bme18I GGWCC 2 cut(s) 726, 759
BmeT110I CYCGRG 1 cut(s) 712
BmgBI CACGTC 1 cut(s) 652
BmgT120I GGNCC 3 cut(s) 293, 726, 759
BmiI GGNNCC 3 cut(s) 140, 372, 792
BmsI GCATC 2 cut(s) 241, 713
BpmI CTGGAG 1 cut(s) 723
Bpu10I CCTNAGC 1 cut(s) 246
Bpu1102I GCTNAGC 1 cut(s) 60
Bpu14I TTCGAA 1 cut(s) 315
BpuEI CTTGAG 1 cut(s) 419
BsaAI YACGTR 2 cut(s) 512, 637
BsaHI GRCGYC 1 cut(s) 105
BsaJI CCNNGG 3 cut(s) 75, 109, 1012
BsaWI WCCGGW 1 cut(s) 692
Bsc4I CCNNNNNNNGG 3 cut(s) 515, 652, 679
Bse118I RCCGGY 1 cut(s) 787
Bse3DI GCAATG 2 cut(s) 406, 930
BseDI CCNNGG 3 cut(s) 75, 109, 1012
BseGI GGATG 4 cut(s) 256, 337, 363, 394
BseLI CCNNNNNNNGG 3 cut(s) 515, 652, 679
BseMI GCAATG 2 cut(s) 406, 930
BseMII CTCAG 1 cut(s) 237
BseRI GAGGAG 1 cut(s) 486
BseSI GKGCMC 1 cut(s) 141
BseX3I CGGCCG 1 cut(s) 112
BseXI GCAGC 8 cut(s) 92, 241, 262, 910, 913, 973, 976, 995
Bsh1236I CGCG 3 cut(s) 111, 280, 291
Bsh1285I CGRYCG 1 cut(s) 115
BshFI GGCC 9 cut(s) 114, 169, 188, 294, 440, 645, 686, 787, 1017
BshNI GGYRCC 2 cut(s) 138, 790
BsiEI CGRYCG 1 cut(s) 115
BsiHKAI GWGCWC 1 cut(s) 94
BsiHKCI CYCGRG 1 cut(s) 712
BsiSI CCGG 3 cut(s) 115, 693, 788
BslI CCNNNNNNNGG 3 cut(s) 515, 652, 679
BsmAI GTCTC 1 cut(s) 498
BsmBI CGTCTC 1 cut(s) 498
BsnI GGCC 9 cut(s) 114, 169, 188, 294, 440, 645, 686, 787, 1017
BsoBI CYCGRG 1 cut(s) 712
Bsp119I TTCGAA 1 cut(s) 315
Bsp1286I GDGCHC 2 cut(s) 94, 141
Bsp143I GATC 7 cut(s) 192, 631, 799, 829, 865, 912, 949
Bsp1720I GCTNAGC 1 cut(s) 60
Bsp19I CCATGG 1 cut(s) 75
BspACI CCGC 8 cut(s) 109, 111, 280, 291, 304, 338, 516, 882
BspANI GGCC 9 cut(s) 114, 169, 188, 294, 440, 645, 686, 787, 1017
BspCNI CTCAG 1 cut(s) 238
BspFNI CGCG 3 cut(s) 111, 280, 291
BspLI GGNNCC 3 cut(s) 140, 372, 792
BspMAI CTGCAG 1 cut(s) 949
BspT104I TTCGAA 1 cut(s) 315
BspT107I GGYRCC 2 cut(s) 138, 790
BsrDI GCAATG 2 cut(s) 406, 930
BsrFI RCCGGY 1 cut(s) 787
BssAI RCCGGY 1 cut(s) 787
BssECI CCNNGG 3 cut(s) 75, 109, 1012
BssMI GATC 7 cut(s) 192, 631, 799, 829, 865, 912, 949
BssNAI GTATAC 1 cut(s) 608
BssNI GRCGYC 1 cut(s) 105
BssT1I CCWWGG 2 cut(s) 75, 1012
Bst1107I GTATAC 1 cut(s) 608
Bst4CI ACNGT 2 cut(s) 375, 968
Bst6I CTCTTC 1 cut(s) 1025
BstACI GRCGYC 1 cut(s) 105
BstAPI GCANNNNNTGC 2 cut(s) 961, 989
BstBAI YACGTR 2 cut(s) 512, 637
BstBI TTCGAA 1 cut(s) 315
BstC8I GCNNGC 3 cut(s) 304, 340, 422
BstDEI CTNAG 2 cut(s) 60, 246
BstDSI CCRYGG 2 cut(s) 75, 109
BstF5I GGATG 4 cut(s) 256, 337, 363, 394
BstFNI CGCG 3 cut(s) 111, 280, 291
BstHHI GCGC 3 cut(s) 280, 291, 433
BstKTI GATC 7 cut(s) 195, 634, 802, 832, 868, 915, 952
BstMAI GTCTC 1 cut(s) 498
BstMBI GATC 7 cut(s) 192, 631, 799, 829, 865, 912, 949
BstMCI CGRYCG 1 cut(s) 115
BstSFI CTRYAG 1 cut(s) 945
BstSLI GKGCMC 1 cut(s) 141
BstUI CGCG 3 cut(s) 111, 280, 291
BstV1I GCAGC 8 cut(s) 92, 241, 262, 910, 913, 973, 976, 995
BstZ17I GTATAC 1 cut(s) 608
BstZI CGGCCG 1 cut(s) 112
BsuRI GGCC 9 cut(s) 114, 169, 188, 294, 440, 645, 686, 787, 1017
BtgI CCRYGG 2 cut(s) 75, 109
BtrI CACGTC 1 cut(s) 652
BtsCI GGATG 4 cut(s) 256, 337, 363, 394
BtsIMutI CAGTG 3 cut(s) 673, 839, 964
Cac8I GCNNGC 3 cut(s) 304, 340, 422
CaiI CAGNNNCTG 2 cut(s) 904, 989
CfoI GCGC 3 cut(s) 280, 291, 433
Cfr10I RCCGGY 1 cut(s) 787
Cfr13I GGNCC 3 cut(s) 293, 726, 759
Cfr42I CCGCGG 1 cut(s) 112
CseI GACGC 3 cut(s) 94, 281, 904
Csp6I GTAC 2 cut(s) 86, 791
CviAII CATG 4 cut(s) 76, 718, 783, 869
CviQI GTAC 2 cut(s) 86, 791
DdeI CTNAG 2 cut(s) 60, 246
DpnI GATC 7 cut(s) 194, 633, 801, 831, 867, 914, 951
DpnII GATC 7 cut(s) 192, 631, 799, 829, 865, 912, 949
DraIII CACNNNGTG 2 cut(s) 603, 652
EaeI YGGCCR 4 cut(s) 112, 186, 684, 785
EagI CGGCCG 1 cut(s) 112
Eam1104I CTCTTC 1 cut(s) 1025
EarI CTCTTC 1 cut(s) 1025
Ecl136II GAGCTC 1 cut(s) 92
EclXI CGGCCG 1 cut(s) 112
Eco130I CCWWGG 2 cut(s) 75, 1012
Eco147I AGGCCT 1 cut(s) 1017
Eco24I GRGCYC 1 cut(s) 94
Eco32I GATATC 1 cut(s) 664
Eco47I GGWCC 2 cut(s) 726, 759
Eco52I CGGCCG 1 cut(s) 112
Eco53kI GAGCTC 1 cut(s) 92
Eco57I CTGAAG 1 cut(s) 429
Eco72I CACGTG 2 cut(s) 512, 637
Eco88I CYCGRG 1 cut(s) 712
EcoICRI GAGCTC 1 cut(s) 92
EcoRV GATATC 1 cut(s) 664
EcoT14I CCWWGG 2 cut(s) 75, 1012
EcoT38I GRGCYC 1 cut(s) 94
ErhI CCWWGG 2 cut(s) 75, 1012
Esp3I CGTCTC 1 cut(s) 498
FaeI CATG 4 cut(s) 79, 721, 786, 872
FatI CATG 4 cut(s) 75, 717, 782, 868
FauI CCCGC 2 cut(s) 311, 331
FauNDI CATATG 1 cut(s) 745
FbaI TGATCA 2 cut(s) 631, 799
FblI GTMKAC 1 cut(s) 607
FokI GGATG 4 cut(s) 263, 344, 370, 401
FriOI GRGCYC 1 cut(s) 94
FspBI CTAG 3 cut(s) 65, 258, 500
GlaI GCGC 3 cut(s) 279, 290, 432
GsuI CTGGAG 1 cut(s) 723
HaeIII GGCC 9 cut(s) 114, 169, 188, 294, 440, 645, 686, 787, 1017
HapII CCGG 3 cut(s) 115, 693, 788
HgaI GACGC 3 cut(s) 94, 281, 904
HhaI GCGC 3 cut(s) 280, 291, 433
Hin1I GRCGYC 1 cut(s) 105
Hin1II CATG 4 cut(s) 79, 721, 786, 872
Hin6I GCGC 3 cut(s) 278, 289, 431
HinP1I GCGC 3 cut(s) 278, 289, 431
HinfI GANTC 6 cut(s) 200, 350, 488, 544, 569, 1007
HpaII CCGG 3 cut(s) 115, 693, 788
Hpy166II GTNNAC 2 cut(s) 608, 726
Hpy188I TCNGA 2 cut(s) 331, 543
Hpy188III TCNNGA 2 cut(s) 132, 174
Hpy8I GTNNAC 2 cut(s) 608, 726
Hpy99I CGWCG 3 cut(s) 133, 175, 653
HpyAV CCTTC 1 cut(s) 911
HpyCH4III ACNGT 2 cut(s) 375, 968
HpyCH4IV ACGT 4 cut(s) 511, 636, 651, 699
HpyCH4V TGCA 7 cut(s) 12, 208, 475, 533, 704, 947, 964
HpyF3I CTNAG 2 cut(s) 60, 246
HpySE526I ACGT 4 cut(s) 511, 636, 651, 699
Hsp92I GRCGYC 1 cut(s) 105
Hsp92II CATG 4 cut(s) 79, 721, 786, 872
HspAI GCGC 3 cut(s) 278, 289, 431
KpnI GGTACC 1 cut(s) 794
Ksp22I TGATCA 2 cut(s) 631, 799
KspI CCGCGG 1 cut(s) 112
Kzo9I GATC 7 cut(s) 192, 631, 799, 829, 865, 912, 949
LmnI GCTCC 2 cut(s) 404, 920
LpnPI CCDG 9 cut(s) 128, 202, 536, 627, 686, 706, 753, 801, 1026
Lsp1109I GCAGC 8 cut(s) 92, 241, 262, 910, 913, 973, 976, 995
LweI GCATC 2 cut(s) 241, 713
MaeI CTAG 3 cut(s) 65, 258, 500
MaeII ACGT 4 cut(s) 511, 636, 651, 699
MaeIII GTNAC 8 cut(s) 593, 637, 668, 695, 751, 877, 906, 968
MalI GATC 7 cut(s) 194, 633, 801, 831, 867, 914, 951
MboI GATC 7 cut(s) 192, 631, 799, 829, 865, 912, 949
MboII GAAGA 5 cut(s) 189, 422, 425, 493, 1012
MfeI CAATTG 2 cut(s) 807, 976
MhlI GDGCHC 2 cut(s) 94, 141
MluCI AATT 4 cut(s) 310, 587, 807, 976
MlyI GAGTC 2 cut(s) 194, 578
MmeI TCCRAC 1 cut(s) 786
MslI CAYNNNNRTG 1 cut(s) 627
MspA1I CMGCKG 4 cut(s) 83, 111, 904, 986
MspI CCGG 3 cut(s) 115, 693, 788
MunI CAATTG 2 cut(s) 807, 976
MvnI CGCG 3 cut(s) 111, 280, 291
NcoI CCATGG 1 cut(s) 75
NdeI CATATG 1 cut(s) 745
NdeII GATC 7 cut(s) 192, 631, 799, 829, 865, 912, 949
NlaIII CATG 4 cut(s) 79, 721, 786, 872
NlaIV GGNNCC 3 cut(s) 140, 372, 792
NmeAIII GCCGAG 1 cut(s) 214
NmuCI GTSAC 8 cut(s) 593, 637, 668, 695, 751, 877, 906, 968
NspV TTCGAA 1 cut(s) 315
PceI AGGCCT 1 cut(s) 1017
PcsI WCGNNNNNNNCGW 1 cut(s) 657
PfeI GAWTC 4 cut(s) 350, 488, 544, 1007
PflFI GACNNNGTC 1 cut(s) 757
PflMI CCANNNNNTGG 1 cut(s) 652
PleI GAGTC 2 cut(s) 194, 577
PmaCI CACGTG 2 cut(s) 512, 637
PmlI CACGTG 2 cut(s) 512, 637
PpsI GAGTC 2 cut(s) 194, 577
Ppu21I YACGTR 2 cut(s) 512, 637
PsiI TTATAA 1 cut(s) 17
Psp124BI GAGCTC 1 cut(s) 94
PspCI CACGTG 2 cut(s) 512, 637
PspN4I GGNNCC 3 cut(s) 140, 372, 792
PspPI GGNCC 3 cut(s) 293, 726, 759
PstI CTGCAG 1 cut(s) 949
PstNI CAGNNNCTG 2 cut(s) 904, 989
PsyI GACNNNGTC 1 cut(s) 757
PvuII CAGCTG 3 cut(s) 83, 904, 986
RsaI GTAC 2 cut(s) 87, 792
RsaNI GTAC 2 cut(s) 86, 791
RseI CAYNNNNRTG 1 cut(s) 627
SacI GAGCTC 1 cut(s) 94
SacII CCGCGG 1 cut(s) 112
Sau3AI GATC 7 cut(s) 192, 631, 799, 829, 865, 912, 949
Sau96I GGNCC 3 cut(s) 293, 726, 759
SchI GAGTC 2 cut(s) 194, 578
SduI GDGCHC 2 cut(s) 94, 141
SfaNI GCATC 2 cut(s) 241, 713
SfcI CTRYAG 1 cut(s) 945
Sfr303I CCGCGG 1 cut(s) 112
SfuI TTCGAA 1 cut(s) 315
SgrBI CCGCGG 1 cut(s) 112
SinI GGWCC 2 cut(s) 726, 759
SmiMI CAYNNNNRTG 1 cut(s) 627
SmlI CTYRAG 1 cut(s) 434
SmoI CTYRAG 1 cut(s) 434
Sse9I AATT 4 cut(s) 310, 587, 807, 976
SseBI AGGCCT 1 cut(s) 1017
SsiI CCGC 8 cut(s) 109, 111, 280, 291, 304, 338, 516, 882
SspMI CTAG 3 cut(s) 65, 258, 500
SstI GAGCTC 1 cut(s) 94
StuI AGGCCT 1 cut(s) 1017
StyI CCWWGG 2 cut(s) 75, 1012
TaaI ACNGT 2 cut(s) 375, 968
TaiI ACGT 4 cut(s) 514, 639, 654, 702
TaqI TCGA 8 cut(s) 22, 131, 237, 315, 660, 707, 839, 915
TasI AATT 4 cut(s) 310, 587, 807, 976
TauI GCSGC 2 cut(s) 114, 294
TfiI GAWTC 4 cut(s) 350, 488, 544, 1007
TscAI CASTG 3 cut(s) 673, 839, 971
TseFI GTSAC 8 cut(s) 593, 637, 668, 695, 751, 877, 906, 968
TseI GCWGC 8 cut(s) 80, 254, 275, 898, 901, 983, 986, 989
Tsp45I GTSAC 8 cut(s) 593, 637, 668, 695, 751, 877, 906, 968
TspDTI ATGAA 4 cut(s) 23, 546, 747, 762
TspRI CASTG 3 cut(s) 673, 839, 971
Tth111I GACNNNGTC 1 cut(s) 757
Van91I CCANNNNNTGG 1 cut(s) 652
VpaK11BI GGWCC 2 cut(s) 726, 759
XapI RAATTY 1 cut(s) 587
XmiI GTMKAC 1 cut(s) 607
XspI CTAG 3 cut(s) 65, 258, 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.