FvH4_5g10310

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0015303
Physical Location & Seq
Reverse (-)
5894876 .. 5895717
842 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g10310.t1

Sequence Viewer

Length: 549 bp
ATGTCGAGCGAGGCAGGCAAGCCCACTGGCCACAAGCAACTCGACCGCGAGCTCCGCGACATGGTCACTTCCATCACCACCCGCGTGACTGATCTTCACAAGTCCCGCTCGGGCCACGGCCATGAGGACGAGGACGAGCATGGTGCGAGTATCATCACTCTTGCCGGAAACAACACCGGAGCCACATTGCGAAGCGAGTTAGATGATCATCATCAAGACAATCTTCGTAAACGTGGTGGCCATCATGGTCTTCAACATGGAGGTCCAACTGGAGAACCGGAGGGGCTGAGCACATATGTGAACAGCAACTTCCAAGCCATCAACAACTCGGTCATGATGGGGGGAAGCTACACGACTAATGATCCGGGTGTTCATCTCGACATTAAGGAATTTTTCGAACCCCATGGGCATGGTAAGCCGGAGAAGAAGGGATGGAAAGGTAAGGAGAAGGAGAAAGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAGCTTCCAAAGCGACCAACTTAAGGAGCATGATGACGCTTTTGTTTCACTTACCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

183

Amino Acids

20.23

Weight (kDa)

5.94

Isoelectric Point (pI)

29.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63310
fragaria_vesca FvH4_5g10310
malus_domestica MD00G1118700.v1.1 MD06G1125100.v1.1
prunus_persica Prupe.5G135700_v2.0.a1
pyrus_communis pycom14g11720
rosa_chinensis RchiOBHm_Chr7g0187911
rosa_laevigata RLG00000004748
rosa_multiflora Rmu_co8094926.1_g000001
rosa_roxburghii Rroxscaffold_3G00266950
rosa_rugosa Rorug06G0485300
rosa_samantha Rh7AG090500 Rh7BG092100 Rh7CG091200 Rh7DG092900
rosa_wichuraiana Rw7G007810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 108
AccII CGCG 3 cut(s) 48, 57, 84
AciI CCGC 4 cut(s) 46, 55, 82, 106
AclWI GGATC 1 cut(s) 356
AcoI YGGCCR 3 cut(s) 28, 118, 238
AcsI RAATTY 1 cut(s) 389
AfiI CCNNNNNNNGG 2 cut(s) 61, 511
AflII CTTAAG 1 cut(s) 509
AgsI TTSAA 1 cut(s) 254
AleI CACNNNNGTG 2 cut(s) 83, 296
AluBI AGCT 3 cut(s) 52, 348, 492
AluI AGCT 3 cut(s) 52, 348, 492
Alw21I GWGCWC 2 cut(s) 54, 293
AlwI GGATC 1 cut(s) 356
Ama87I CYCGRG 1 cut(s) 109
AoxI GGCC 4 cut(s) 28, 112, 118, 238
ApoI RAATTY 1 cut(s) 389
AspS9I GGNCC 2 cut(s) 112, 263
AsuC2I CCSGG 1 cut(s) 366
AsuHPI GGTGA 1 cut(s) 67
AsuII TTCGAA 1 cut(s) 396
AvaI CYCGRG 1 cut(s) 109
AvaII GGWCC 1 cut(s) 263
BalI TGGCCA 2 cut(s) 30, 240
BanII GRGCYC 1 cut(s) 54
BbsI GAAGAC 1 cut(s) 242
Bbv12I GWGCWC 2 cut(s) 54, 293
BccI CCATC 5 cut(s) 80, 249, 326, 331, 426
BceAI ACGGC 1 cut(s) 133
BcgI CGANNNNNNTGC 2 cut(s) 125, 159
BclI TGATCA 1 cut(s) 205
BcnI CCSGG 1 cut(s) 366
BfrI CTTAAG 1 cut(s) 509
BlpI GCTNAGC 1 cut(s) 287
Bme1390I CCNGG 1 cut(s) 366
Bme18I GGWCC 1 cut(s) 263
BmeT110I CYCGRG 1 cut(s) 109
BmgT120I GGNCC 2 cut(s) 112, 263
BmiI GGNNCC 1 cut(s) 181
BmrFI CCNGG 1 cut(s) 366
BpiI GAAGAC 1 cut(s) 242
BpmI CTGGAG 1 cut(s) 291
Bpu1102I GCTNAGC 1 cut(s) 287
Bpu14I TTCGAA 1 cut(s) 396
BpuMI CCSGG 1 cut(s) 366
BsaBI GATNNNNATC 2 cut(s) 207, 210
BsaJI CCNNGG 2 cut(s) 115, 403
BsaWI WCCGGW 2 cut(s) 176, 277
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 511
Bse1I ACTGG 2 cut(s) 31, 274
Bse3DI GCAATG 1 cut(s) 185
Bse8I GATNNNNATC 2 cut(s) 207, 210
BseDI CCNNGG 2 cut(s) 115, 403
BseGI GGATG 1 cut(s) 437
BseJI GATNNNNATC 2 cut(s) 207, 210
BseLI CCNNNNNNNGG 2 cut(s) 61, 511
BseMI GCAATG 1 cut(s) 185
BseMII CTCAG 1 cut(s) 278
BseNI ACTGG 2 cut(s) 31, 274
Bsh1236I CGCG 3 cut(s) 48, 57, 84
Bsh1285I CGRYCG 1 cut(s) 46
BshFI GGCC 4 cut(s) 30, 114, 120, 240
BsiEI CGRYCG 1 cut(s) 46
BsiHKAI GWGCWC 2 cut(s) 54, 293
BsiHKCI CYCGRG 1 cut(s) 109
BsiSI CCGG 5 cut(s) 165, 177, 278, 365, 419
BslFI GGGAC 1 cut(s) 88
BslI CCNNNNNNNGG 2 cut(s) 61, 511
BsmFI GGGAC 1 cut(s) 88
BsnI GGCC 4 cut(s) 30, 114, 120, 240
BsoBI CYCGRG 1 cut(s) 109
Bsp119I TTCGAA 1 cut(s) 396
Bsp1286I GDGCHC 2 cut(s) 54, 293
Bsp143I GATC 3 cut(s) 91, 205, 361
Bsp1720I GCTNAGC 1 cut(s) 287
Bsp19I CCATGG 1 cut(s) 403
BspACI CCGC 4 cut(s) 46, 55, 82, 106
BspANI GGCC 4 cut(s) 30, 114, 120, 240
BspCNI CTCAG 1 cut(s) 279
BspFNI CGCG 3 cut(s) 48, 57, 84
BspHI TCATGA 1 cut(s) 333
BspLI GGNNCC 1 cut(s) 181
BspPI GGATC 1 cut(s) 356
BspT104I TTCGAA 1 cut(s) 396
BspTI CTTAAG 1 cut(s) 509
BsrBI CCGCTC 1 cut(s) 108
BsrDI GCAATG 1 cut(s) 185
BsrI ACTGG 2 cut(s) 31, 274
BssECI CCNNGG 2 cut(s) 115, 403
BssMI GATC 3 cut(s) 91, 205, 361
BssT1I CCWWGG 1 cut(s) 403
BstAFI CTTAAG 1 cut(s) 509
BstBI TTCGAA 1 cut(s) 396
BstC8I GCNNGC 3 cut(s) 16, 20, 50
BstDEI CTNAG 1 cut(s) 287
BstDSI CCRYGG 2 cut(s) 115, 403
BstF5I GGATG 1 cut(s) 437
BstFNI CGCG 3 cut(s) 48, 57, 84
BstKTI GATC 3 cut(s) 94, 208, 364
BstMBI GATC 3 cut(s) 91, 205, 361
BstMCI CGRYCG 1 cut(s) 46
BstMWI GCNNNNNNNGC 4 cut(s) 15, 54, 415, 498
BstSCI CCNGG 1 cut(s) 364
BstUI CGCG 3 cut(s) 48, 57, 84
BstV2I GAAGAC 1 cut(s) 242
BstXI CCANNNNNNTGG 1 cut(s) 410
BsuRI GGCC 4 cut(s) 30, 114, 120, 240
BtgI CCRYGG 2 cut(s) 115, 403
BtsCI GGATG 1 cut(s) 437
BtsIMutI CAGTG 1 cut(s) 24
Cac8I GCNNGC 3 cut(s) 16, 20, 50
CciI TCATGA 1 cut(s) 333
Cfr13I GGNCC 2 cut(s) 112, 263
CseI GACGC 1 cut(s) 533
CviAII CATG 9 cut(s) 61, 122, 140, 245, 257, 334, 404, 410, 518
DdeI CTNAG 1 cut(s) 287
DpnI GATC 3 cut(s) 93, 207, 363
DpnII GATC 3 cut(s) 91, 205, 361
EaeI YGGCCR 3 cut(s) 28, 118, 238
Ecl136II GAGCTC 1 cut(s) 52
Eco130I CCWWGG 1 cut(s) 403
Eco24I GRGCYC 1 cut(s) 54
Eco47I GGWCC 1 cut(s) 263
Eco53kI GAGCTC 1 cut(s) 52
Eco88I CYCGRG 1 cut(s) 109
EcoICRI GAGCTC 1 cut(s) 52
EcoT14I CCWWGG 1 cut(s) 403
EcoT38I GRGCYC 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 403
FaeI CATG 9 cut(s) 64, 125, 143, 248, 260, 337, 407, 413, 521
FalI AAGNNNNNCTT 4 cut(s) 207, 239, 476, 508
FaqI GGGAC 1 cut(s) 88
FatI CATG 9 cut(s) 60, 121, 139, 244, 256, 333, 403, 409, 517
FauI CCCGC 2 cut(s) 89, 113
FauNDI CATATG 1 cut(s) 295
FbaI TGATCA 1 cut(s) 205
FokI GGATG 1 cut(s) 444
FriOI GRGCYC 1 cut(s) 54
GsuI CTGGAG 1 cut(s) 291
HaeIII GGCC 4 cut(s) 30, 114, 120, 240
HapII CCGG 5 cut(s) 165, 177, 278, 365, 419
HgaI GACGC 1 cut(s) 533
Hin1II CATG 9 cut(s) 64, 125, 143, 248, 260, 337, 407, 413, 521
HpaII CCGG 5 cut(s) 165, 177, 278, 365, 419
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 2 cut(s) 230, 301
Hpy188III TCNNGA 3 cut(s) 215, 334, 377
Hpy8I GTNNAC 2 cut(s) 230, 301
HpyAV CCTTC 7 cut(s) 421, 442, 454, 460, 466, 472, 478
HpyCH4IV ACGT 1 cut(s) 232
HpyF10VI GCNNNNNNNGC 4 cut(s) 15, 54, 415, 498
HpyF3I CTNAG 1 cut(s) 287
HpySE526I ACGT 1 cut(s) 232
Hsp92II CATG 9 cut(s) 64, 125, 143, 248, 260, 337, 407, 413, 521
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 3 cut(s) 91, 205, 361
LmnI GCTCC 3 cut(s) 57, 179, 514
LpnPI CCDG 7 cut(s) 12, 178, 190, 255, 291, 378, 432
MaeII ACGT 1 cut(s) 232
MaeIII GTNAC 2 cut(s) 64, 85
MalI GATC 3 cut(s) 93, 207, 363
MbiI CCGCTC 1 cut(s) 108
MboI GATC 3 cut(s) 91, 205, 361
MboII GAAGA 4 cut(s) 86, 215, 242, 436
MhlI GDGCHC 2 cut(s) 54, 293
MlsI TGGCCA 2 cut(s) 30, 240
MluCI AATT 1 cut(s) 389
MluNI TGGCCA 2 cut(s) 30, 240
MmeI TCCRAC 1 cut(s) 290
MnlI CCTC 5 cut(s) 4, 118, 124, 254, 274
Mox20I TGGCCA 2 cut(s) 30, 240
MscI TGGCCA 2 cut(s) 30, 240
MseI TTAA 2 cut(s) 384, 510
MslI CAYNNNNRTG 4 cut(s) 83, 120, 296, 408
Msp20I TGGCCA 2 cut(s) 30, 240
MspCI CTTAAG 1 cut(s) 509
MspI CCGG 5 cut(s) 165, 177, 278, 365, 419
MspR9I CCNGG 1 cut(s) 366
MvnI CGCG 3 cut(s) 48, 57, 84
MwoI GCNNNNNNNGC 4 cut(s) 15, 54, 415, 498
NciI CCSGG 1 cut(s) 366
NcoI CCATGG 1 cut(s) 403
NdeI CATATG 1 cut(s) 295
NdeII GATC 3 cut(s) 91, 205, 361
NlaIII CATG 9 cut(s) 64, 125, 143, 248, 260, 337, 407, 413, 521
NlaIV GGNNCC 1 cut(s) 181
NmuCI GTSAC 2 cut(s) 64, 85
NspV TTCGAA 1 cut(s) 396
OliI CACNNNNGTG 2 cut(s) 83, 296
PagI TCATGA 1 cut(s) 333
PflFI GACNNNGTC 1 cut(s) 62
Psp124BI GAGCTC 1 cut(s) 54
PspN4I GGNNCC 1 cut(s) 181
PspPI GGNCC 2 cut(s) 112, 263
PsyI GACNNNGTC 1 cut(s) 62
RseI CAYNNNNRTG 4 cut(s) 83, 120, 296, 408
SacI GAGCTC 1 cut(s) 54
SaqAI TTAA 2 cut(s) 384, 510
Sau3AI GATC 3 cut(s) 91, 205, 361
Sau96I GGNCC 2 cut(s) 112, 263
ScrFI CCNGG 1 cut(s) 366
SduI GDGCHC 2 cut(s) 54, 293
SetI ASST 6 cut(s) 54, 235, 265, 350, 442, 494
SfuI TTCGAA 1 cut(s) 396
SinI GGWCC 1 cut(s) 263
SmiMI CAYNNNNRTG 4 cut(s) 83, 120, 296, 408
SmlI CTYRAG 1 cut(s) 509
SmoI CTYRAG 1 cut(s) 509
Sse9I AATT 1 cut(s) 389
SsiI CCGC 4 cut(s) 46, 55, 82, 106
SstI GAGCTC 1 cut(s) 54
StyD4I CCNGG 1 cut(s) 364
StyI CCWWGG 1 cut(s) 403
TaiI ACGT 1 cut(s) 235
TaqI TCGA 4 cut(s) 5, 42, 378, 396
TaqII GACCGA 1 cut(s) 319
TasI AATT 1 cut(s) 389
Tru1I TTAA 2 cut(s) 384, 510
Tru9I TTAA 2 cut(s) 384, 510
TscAI CASTG 1 cut(s) 31
TseFI GTSAC 2 cut(s) 64, 85
Tsp45I GTSAC 2 cut(s) 64, 85
TspDTI ATGAA 1 cut(s) 362
TspRI CASTG 1 cut(s) 31
Tth111I GACNNNGTC 1 cut(s) 62
Vha464I CTTAAG 1 cut(s) 509
VpaK11BI GGWCC 1 cut(s) 263
XapI RAATTY 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.