Rh7BG092100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0015303
Physical Location & Seq
Forward (+)
6787251 .. 6788524
1274 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG092100.1

Sequence Viewer

Length: 660 bp
ATGATTAATATCCTTGTATTGCCAATTAAGGCATTGCTTTATTCCTTTACTCCTTCATATATGTACCTACCCCATGCAATGCAATCTCCCCAAACCTCAACACCTTCAACTCACAACACAAACTCATCAGTCATCACCCTCTCCACCCTTGCGTCCTCTTACATCAAAACCATGTCGACCGAGGCAGCCAAGCCCACTGGCTACAAGCAACTCGACCGCGAGCTCCGTGATATGATCACTTCCATCACCAACCGCGTGACCGATCTTCACAAGTCCGGCTCGGCCCACGGCCACGAGGAGGACGAGGACGAGCATGGTGTGAGGATCATCACCCTTGCCGGAAACAACACCGGAGCCACATTGCGGAGCGAGTTGGATGATCATCAGGACAATCATCGTAAACGTGGCGGCCATCATGGTCTTCATCTAGGAAGTCCTGATGAAGACCCCGAGGGGCTGAGCACATATGTGAACAGCAACTTCCAAGCCATCAACAACTCGCTCGTGATGGGGGGTAGCTACACCACTAATGATCCGGGTGTTCATCTCGACATTACTGATTTTTTCGAACCACATGGGCATAGTAAGCCGGAGAAGAAGGGGTGGAAGGGTAAGAAGAAAGAGAAGAGCGACCAGCATCAGGAGCATGATGATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

219

Amino Acids

24.31

Weight (kDa)

5.94

Isoelectric Point (pI)

36.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63310
fragaria_vesca FvH4_5g10310
malus_domestica MD00G1118700.v1.1 MD06G1125100.v1.1
prunus_persica Prupe.5G135700_v2.0.a1
pyrus_communis pycom14g11720
rosa_chinensis RchiOBHm_Chr7g0187911
rosa_laevigata RLG00000004748
rosa_multiflora Rmu_co8094926.1_g000001
rosa_roxburghii Rroxscaffold_3G00266950
rosa_rugosa Rorug06G0485300
rosa_samantha Rh7AG090500 Rh7BG092100 Rh7CG091200 Rh7DG092900
rosa_wichuraiana Rw7G007810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 176
AccII CGCG 2 cut(s) 219, 255
AciI CCGC 4 cut(s) 217, 253, 364, 408
AclWI GGATC 2 cut(s) 332, 527
AcoI YGGCCR 2 cut(s) 289, 409
AfaI GTAC 1 cut(s) 65
AfiI CCNNNNNNNGG 3 cut(s) 298, 363, 640
AgsI TTSAA 1 cut(s) 108
AleI CACNNNNGTG 1 cut(s) 467
AluBI AGCT 2 cut(s) 223, 519
AluI AGCT 2 cut(s) 223, 519
Alw21I GWGCWC 2 cut(s) 225, 464
AlwI GGATC 2 cut(s) 332, 527
Ama87I CYCGRG 1 cut(s) 449
AoxI GGCC 3 cut(s) 282, 289, 409
ApeKI GCWGC 1 cut(s) 185
AseI ATTAAT 1 cut(s) 6
AspS9I GGNCC 1 cut(s) 283
AsuC2I CCSGG 1 cut(s) 537
AsuHPI GGTGA 3 cut(s) 127, 238, 322
AsuII TTCGAA 1 cut(s) 567
AvaI CYCGRG 1 cut(s) 449
BanII GRGCYC 1 cut(s) 225
BauI CACGAG 2 cut(s) 293, 503
BbsI GAAGAC 2 cut(s) 413, 450
Bbv12I GWGCWC 2 cut(s) 225, 464
BbvI GCAGC 1 cut(s) 197
BccI CCATC 4 cut(s) 251, 420, 497, 502
BceAI ACGGC 1 cut(s) 304
BclI TGATCA 2 cut(s) 234, 379
BcnI CCSGG 1 cut(s) 537
BfaI CTAG 1 cut(s) 428
BisI GCNGC 2 cut(s) 186, 409
BlpI GCTNAGC 1 cut(s) 458
BlsI GCNGC 2 cut(s) 187, 410
Bme1390I CCNGG 1 cut(s) 537
BmeT110I CYCGRG 1 cut(s) 449
BmgT120I GGNCC 1 cut(s) 283
BmiI GGNNCC 1 cut(s) 355
BmrFI CCNGG 1 cut(s) 537
BmsI GCATC 1 cut(s) 646
BpiI GAAGAC 2 cut(s) 413, 450
Bpu1102I GCTNAGC 1 cut(s) 458
Bpu14I TTCGAA 1 cut(s) 567
BpuMI CCSGG 1 cut(s) 537
BsaBI GATNNNNATC 2 cut(s) 8, 381
BsaJI CCNNGG 3 cut(s) 180, 286, 450
BsaWI WCCGGW 1 cut(s) 350
Bsc4I CCNNNNNNNGG 3 cut(s) 298, 363, 640
Bse1I ACTGG 1 cut(s) 202
Bse3DI GCAATG 3 cut(s) 32, 84, 359
Bse8I GATNNNNATC 2 cut(s) 8, 381
BseDI CCNNGG 3 cut(s) 180, 286, 450
BseGI GGATG 1 cut(s) 382
BseJI GATNNNNATC 2 cut(s) 8, 381
BseLI CCNNNNNNNGG 3 cut(s) 298, 363, 640
BseMI GCAATG 3 cut(s) 32, 84, 359
BseMII CTCAG 1 cut(s) 449
BseNI ACTGG 1 cut(s) 202
BseRI GAGGAG 1 cut(s) 311
BseXI GCAGC 1 cut(s) 197
Bsh1236I CGCG 2 cut(s) 219, 255
Bsh1285I CGRYCG 2 cut(s) 180, 217
BshFI GGCC 3 cut(s) 284, 291, 411
BsiEI CGRYCG 2 cut(s) 180, 217
BsiHKAI GWGCWC 2 cut(s) 225, 464
BsiHKCI CYCGRG 1 cut(s) 449
BsiSI CCGG 5 cut(s) 276, 339, 351, 536, 590
BslI CCNNNNNNNGG 3 cut(s) 298, 363, 640
BsnI GGCC 3 cut(s) 284, 291, 411
BsoBI CYCGRG 1 cut(s) 449
Bsp119I TTCGAA 1 cut(s) 567
Bsp1286I GDGCHC 2 cut(s) 225, 464
Bsp143I GATC 5 cut(s) 234, 262, 324, 379, 532
Bsp1720I GCTNAGC 1 cut(s) 458
BspACI CCGC 4 cut(s) 217, 253, 364, 408
BspANI GGCC 3 cut(s) 284, 291, 411
BspCNI CTCAG 1 cut(s) 450
BspFNI CGCG 2 cut(s) 219, 255
BspLI GGNNCC 1 cut(s) 355
BspPI GGATC 2 cut(s) 332, 527
BspQI GCTCTTC 1 cut(s) 620
BspT104I TTCGAA 1 cut(s) 567
BsrDI GCAATG 3 cut(s) 32, 84, 359
BsrI ACTGG 1 cut(s) 202
BssECI CCNNGG 3 cut(s) 180, 286, 450
BssMI GATC 5 cut(s) 234, 262, 324, 379, 532
BssSI CACGAG 2 cut(s) 293, 503
Bst2BI CACGAG 2 cut(s) 293, 503
Bst6I CTCTTC 1 cut(s) 620
BstBI TTCGAA 1 cut(s) 567
BstC8I GCNNGC 1 cut(s) 221
BstDEI CTNAG 1 cut(s) 458
BstDSI CCRYGG 1 cut(s) 286
BstF5I GGATG 1 cut(s) 382
BstFNI CGCG 2 cut(s) 219, 255
BstKTI GATC 5 cut(s) 237, 265, 327, 382, 535
BstMBI GATC 5 cut(s) 234, 262, 324, 379, 532
BstMCI CGRYCG 2 cut(s) 180, 217
BstMWI GCNNNNNNNGC 2 cut(s) 586, 643
BstSCI CCNGG 1 cut(s) 535
BstUI CGCG 2 cut(s) 219, 255
BstV1I GCAGC 1 cut(s) 197
BstV2I GAAGAC 2 cut(s) 413, 450
BsuRI GGCC 3 cut(s) 284, 291, 411
BtgI CCRYGG 1 cut(s) 286
BtsCI GGATG 1 cut(s) 382
BtsIMutI CAGTG 1 cut(s) 195
Cac8I GCNNGC 1 cut(s) 221
Cfr13I GGNCC 1 cut(s) 283
CseI GACGC 1 cut(s) 141
Csp6I GTAC 1 cut(s) 64
CviAII CATG 6 cut(s) 74, 172, 314, 416, 575, 647
CviQI GTAC 1 cut(s) 64
DdeI CTNAG 1 cut(s) 458
DpnI GATC 5 cut(s) 236, 264, 326, 381, 534
DpnII GATC 5 cut(s) 234, 262, 324, 379, 532
EaeI YGGCCR 2 cut(s) 289, 409
Eam1104I CTCTTC 1 cut(s) 620
EarI CTCTTC 1 cut(s) 620
Ecl136II GAGCTC 1 cut(s) 223
Eco24I GRGCYC 1 cut(s) 225
Eco53kI GAGCTC 1 cut(s) 223
Eco88I CYCGRG 1 cut(s) 449
EcoICRI GAGCTC 1 cut(s) 223
EcoT38I GRGCYC 1 cut(s) 225
FaeI CATG 6 cut(s) 77, 175, 317, 419, 578, 650
FatI CATG 6 cut(s) 73, 171, 313, 415, 574, 646
FauNDI CATATG 1 cut(s) 466
FbaI TGATCA 2 cut(s) 234, 379
FblI GTMKAC 1 cut(s) 176
Fnu4HI GCNGC 2 cut(s) 186, 409
FokI GGATG 1 cut(s) 389
FriOI GRGCYC 1 cut(s) 225
Fsp4HI GCNGC 2 cut(s) 186, 409
FspBI CTAG 1 cut(s) 428
GluI GCNGC 2 cut(s) 186, 409
HaeIII GGCC 3 cut(s) 284, 291, 411
HapII CCGG 5 cut(s) 276, 339, 351, 536, 590
HgaI GACGC 1 cut(s) 141
Hin1II CATG 6 cut(s) 77, 175, 317, 419, 578, 650
HincII GTYRAC 1 cut(s) 177
HindII GTYRAC 1 cut(s) 177
HpaII CCGG 5 cut(s) 276, 339, 351, 536, 590
HphI GGTGA 3 cut(s) 127, 238, 322
Hpy166II GTNNAC 3 cut(s) 177, 401, 472
Hpy188III TCNNGA 5 cut(s) 386, 437, 505, 548, 641
Hpy8I GTNNAC 3 cut(s) 177, 401, 472
HpyAV CCTTC 4 cut(s) 63, 114, 592, 601
HpyCH4IV ACGT 1 cut(s) 403
HpyCH4V TGCA 2 cut(s) 77, 82
HpyF10VI GCNNNNNNNGC 2 cut(s) 586, 643
HpyF3I CTNAG 1 cut(s) 458
HpySE526I ACGT 1 cut(s) 403
Hsp92II CATG 6 cut(s) 77, 175, 317, 419, 578, 650
Ksp22I TGATCA 2 cut(s) 234, 379
Kzo9I GATC 5 cut(s) 234, 262, 324, 379, 532
LguI GCTCTTC 1 cut(s) 620
LmnI GCTCC 4 cut(s) 228, 353, 366, 643
Lsp1109I GCAGC 1 cut(s) 197
LweI GCATC 1 cut(s) 646
MaeI CTAG 1 cut(s) 428
MaeII ACGT 1 cut(s) 403
MaeIII GTNAC 1 cut(s) 256
MalI GATC 5 cut(s) 236, 264, 326, 381, 534
MboI GATC 5 cut(s) 234, 262, 324, 379, 532
MboII GAAGA 6 cut(s) 257, 413, 455, 607, 628, 637
MhlI GDGCHC 2 cut(s) 225, 464
MluCI AATT 1 cut(s) 24
MmeI TCCRAC 1 cut(s) 354
MnlI CCTC 9 cut(s) 106, 149, 166, 175, 289, 292, 298, 315, 445
MseI TTAA 2 cut(s) 6, 27
MslI CAYNNNNRTG 2 cut(s) 467, 651
MspI CCGG 5 cut(s) 276, 339, 351, 536, 590
MspR9I CCNGG 1 cut(s) 537
MvnI CGCG 2 cut(s) 219, 255
MwoI GCNNNNNNNGC 2 cut(s) 586, 643
NciI CCSGG 1 cut(s) 537
NdeI CATATG 1 cut(s) 466
NdeII GATC 5 cut(s) 234, 262, 324, 379, 532
NlaIII CATG 6 cut(s) 77, 175, 317, 419, 578, 650
NlaIV GGNNCC 1 cut(s) 355
NmeAIII GCCGAG 1 cut(s) 260
NmuCI GTSAC 1 cut(s) 256
NspV TTCGAA 1 cut(s) 567
OliI CACNNNNGTG 1 cut(s) 467
PciSI GCTCTTC 1 cut(s) 620
PcsI WCGNNNNNNNCGW 1 cut(s) 300
PkrI GCNGC 2 cut(s) 187, 410
PshBI ATTAAT 1 cut(s) 6
Psp124BI GAGCTC 1 cut(s) 225
PspN4I GGNNCC 1 cut(s) 355
PspPI GGNCC 1 cut(s) 283
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
RseI CAYNNNNRTG 2 cut(s) 467, 651
SacI GAGCTC 1 cut(s) 225
SalI GTCGAC 1 cut(s) 175
SapI GCTCTTC 1 cut(s) 620
SaqAI TTAA 2 cut(s) 6, 27
SatI GCNGC 2 cut(s) 186, 409
Sau3AI GATC 5 cut(s) 234, 262, 324, 379, 532
Sau96I GGNCC 1 cut(s) 283
ScrFI CCNGG 1 cut(s) 537
SduI GDGCHC 2 cut(s) 225, 464
SetI ASST 6 cut(s) 69, 98, 106, 225, 406, 521
SfaNI GCATC 1 cut(s) 646
SfuI TTCGAA 1 cut(s) 567
SmiMI CAYNNNNRTG 2 cut(s) 467, 651
Sse9I AATT 1 cut(s) 24
SsiI CCGC 4 cut(s) 217, 253, 364, 408
SspMI CTAG 1 cut(s) 428
SstI GAGCTC 1 cut(s) 225
StyD4I CCNGG 1 cut(s) 535
TaiI ACGT 1 cut(s) 406
TaqI TCGA 4 cut(s) 176, 213, 549, 567
TaqII GACCGA 2 cut(s) 194, 275
TasI AATT 1 cut(s) 24
TauI GCSGC 1 cut(s) 411
Tru1I TTAA 2 cut(s) 6, 27
Tru9I TTAA 2 cut(s) 6, 27
TscAI CASTG 1 cut(s) 202
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 1 cut(s) 185
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 4 cut(s) 45, 413, 456, 533
TspGWI ACGGA 1 cut(s) 215
TspRI CASTG 1 cut(s) 202
VspI ATTAAT 1 cut(s) 6
XmiI GTMKAC 1 cut(s) 176
XspI CTAG 1 cut(s) 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.