MD06G1125100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0015303
Physical Location & Seq
Forward (+)
26718701 .. 26719249
549 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1125100.v1.1.491

Sequence Viewer

Length: 549 bp
ATGACAAGCGAGTCACACAAAACCAGCACCCACTCCTCAGCCGATCACGGAGGCAGCAGGCCCAACAAGCAACTAGACAAAGAAATCCGAGACATGGTCTCCGCCATCACCAACCGAGTCACCGACATCCACAAGTCCGGCTCCATCCACCACGAGGATGAGGACGAACACGGCGTGAGGATCATCACCCTCGCAGGATCCAACACCGGAGCGACATTGAGGAGTGAGCTGGATCACGAGAACATGAACAAATCTGGAGGGCTTCATGGTGGTGGTCCAGCGTTCGGAGACGCTGATGGGCTGAGCACTTATGTGAACAGCAACTTCCAGGCTGTGAACAACTCCCTCATGATGGGCGGTAGCTACACCACGAATGACCCCGGTGTTCATTTGGACATCACGGATGTTGTGGAGCCGCACGGAGGGCATCACGGGAGGCCGGAGAGGCGGGGGTTGAAGGGTAAGAAGGGGAAGGGGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGACCTTCCATAGCGACCAGCATGATGAGCAAGATGAGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

183

Amino Acids

19.8

Weight (kDa)

5.8

Isoelectric Point (pI)

32.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63310
fragaria_vesca FvH4_5g10310
malus_domestica MD00G1118700.v1.1 MD06G1125100.v1.1
prunus_persica Prupe.5G135700_v2.0.a1
pyrus_communis pycom14g11720
rosa_chinensis RchiOBHm_Chr7g0187911
rosa_laevigata RLG00000004748
rosa_multiflora Rmu_co8094926.1_g000001
rosa_roxburghii Rroxscaffold_3G00266950
rosa_rugosa Rorug06G0485300
rosa_samantha Rh7AG090500 Rh7BG092100 Rh7CG091200 Rh7DG092900
rosa_wichuraiana Rw7G007810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 10
AciI CCGC 4 cut(s) 102, 357, 416, 448
AclWI GGATC 4 cut(s) 188, 192, 205, 240
AdeI CACNNNGTG 1 cut(s) 175
AfiI CCNNNNNNNGG 5 cut(s) 94, 154, 284, 352, 422
AgsI TTSAA 1 cut(s) 457
AjnI CCWGG 1 cut(s) 327
AleI CACNNNNGTG 1 cut(s) 311
AluBI AGCT 2 cut(s) 229, 363
AluI AGCT 2 cut(s) 229, 363
Alw21I GWGCWC 1 cut(s) 308
Alw26I GTCTC 4 cut(s) 84, 103, 282, 500
AlwI GGATC 4 cut(s) 188, 192, 205, 240
AoxI GGCC 2 cut(s) 59, 437
ApeKI GCWGC 1 cut(s) 54
AspS9I GGNCC 2 cut(s) 60, 275
AsuC2I CCSGG 1 cut(s) 381
AsuHPI GGTGA 3 cut(s) 100, 112, 178
AvaII GGWCC 1 cut(s) 275
BamHI GGATCC 1 cut(s) 197
BauI CACGAG 2 cut(s) 152, 236
Bbv12I GWGCWC 1 cut(s) 308
BbvCI CCTCAGC 1 cut(s) 37
BbvI GCAGC 1 cut(s) 66
BccI CCATC 4 cut(s) 113, 152, 290, 346
BceAI ACGGC 1 cut(s) 187
BciT130I CCWGG 1 cut(s) 329
BcnI CCSGG 1 cut(s) 381
BcoDI GTCTC 4 cut(s) 84, 103, 282, 500
BfaI CTAG 1 cut(s) 74
BglI GCCNNNNNGGC 1 cut(s) 445
BisI GCNGC 2 cut(s) 55, 416
BlpI GCTNAGC 1 cut(s) 302
BlsI GCNGC 2 cut(s) 56, 417
Bme1390I CCNGG 2 cut(s) 329, 381
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 2 cut(s) 60, 275
BmiI GGNNCC 3 cut(s) 142, 199, 414
BmrFI CCNGG 2 cut(s) 329, 381
BmsI GCATC 1 cut(s) 436
BpmI CTGGAG 1 cut(s) 276
Bpu10I CCTNAGC 1 cut(s) 37
Bpu1102I GCTNAGC 1 cut(s) 302
BpuMI CCSGG 1 cut(s) 381
BsaI GGTCTC 2 cut(s) 103, 500
BsaJI CCNNGG 1 cut(s) 379
BsaWI WCCGGW 1 cut(s) 206
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 5 cut(s) 94, 154, 284, 352, 422
BseBI CCWGG 1 cut(s) 329
BseDI CCNNGG 1 cut(s) 379
BseGI GGATG 4 cut(s) 126, 144, 163, 409
BseLI CCNNNNNNNGG 5 cut(s) 94, 154, 284, 352, 422
BseMII CTCAG 2 cut(s) 51, 293
BseRI GAGGAG 2 cut(s) 25, 235
BseXI GCAGC 1 cut(s) 66
BshFI GGCC 2 cut(s) 61, 439
BsiHKAI GWGCWC 1 cut(s) 308
BsiSI CCGG 4 cut(s) 138, 207, 381, 440
BslI CCNNNNNNNGG 5 cut(s) 94, 154, 284, 352, 422
BsmAI GTCTC 4 cut(s) 84, 103, 282, 500
BsmBI CGTCTC 1 cut(s) 282
BsnI GGCC 2 cut(s) 61, 439
Bso31I GGTCTC 2 cut(s) 103, 500
Bsp1286I GDGCHC 1 cut(s) 308
Bsp143I GATC 4 cut(s) 43, 180, 197, 232
Bsp1720I GCTNAGC 1 cut(s) 302
BspACI CCGC 4 cut(s) 102, 357, 416, 448
BspANI GGCC 2 cut(s) 61, 439
BspCNI CTCAG 2 cut(s) 50, 294
BspHI TCATGA 1 cut(s) 348
BspLI GGNNCC 3 cut(s) 142, 199, 414
BspPI GGATC 4 cut(s) 188, 192, 205, 240
BspTNI GGTCTC 2 cut(s) 103, 500
BssECI CCNNGG 1 cut(s) 379
BssMI GATC 4 cut(s) 43, 180, 197, 232
BssSI CACGAG 2 cut(s) 152, 236
Bst2BI CACGAG 2 cut(s) 152, 236
Bst2UI CCWGG 1 cut(s) 329
BstC8I GCNNGC 1 cut(s) 59
BstDEI CTNAG 2 cut(s) 37, 302
BstF5I GGATG 4 cut(s) 126, 144, 163, 409
BstKTI GATC 4 cut(s) 46, 183, 200, 235
BstMAI GTCTC 4 cut(s) 84, 103, 282, 500
BstMBI GATC 4 cut(s) 43, 180, 197, 232
BstMWI GCNNNNNNNGC 4 cut(s) 67, 424, 445, 532
BstNI CCWGG 1 cut(s) 329
BstSCI CCNGG 2 cut(s) 327, 379
BstV1I GCAGC 1 cut(s) 66
BstX2I RGATCY 1 cut(s) 197
BstYI RGATCY 1 cut(s) 197
BsuRI GGCC 2 cut(s) 61, 439
BtsCI GGATG 4 cut(s) 126, 144, 163, 409
Cac8I GCNNGC 1 cut(s) 59
CciI TCATGA 1 cut(s) 348
Cfr13I GGNCC 2 cut(s) 60, 275
CseI GACGC 1 cut(s) 299
CviAII CATG 5 cut(s) 94, 244, 266, 349, 527
DdeI CTNAG 2 cut(s) 37, 302
DpnI GATC 4 cut(s) 45, 182, 199, 234
DpnII GATC 4 cut(s) 43, 180, 197, 232
DraIII CACNNNGTG 1 cut(s) 175
DrdI GACNNNNNNGTC 1 cut(s) 10
DseDI GACNNNNNNGTC 1 cut(s) 10
EciI GGCGGA 1 cut(s) 91
Eco31I GGTCTC 2 cut(s) 103, 500
Eco47I GGWCC 1 cut(s) 275
EcoRII CCWGG 1 cut(s) 327
Esp3I CGTCTC 1 cut(s) 282
FaeI CATG 5 cut(s) 97, 247, 269, 352, 530
FaiI YATR 7 cut(s) 95, 245, 267, 312, 350, 516, 528
FalI AAGNNNNNCTT 2 cut(s) 494, 526
FatI CATG 5 cut(s) 93, 243, 265, 348, 526
FauI CCCGC 1 cut(s) 441
Fnu4HI GCNGC 2 cut(s) 55, 416
FokI GGATG 4 cut(s) 113, 131, 170, 416
Fsp4HI GCNGC 2 cut(s) 55, 416
FspBI CTAG 1 cut(s) 74
GluI GCNGC 2 cut(s) 55, 416
GsuI CTGGAG 1 cut(s) 276
HaeIII GGCC 2 cut(s) 61, 439
HapII CCGG 4 cut(s) 138, 207, 381, 440
HgaI GACGC 1 cut(s) 299
Hin1II CATG 5 cut(s) 97, 247, 269, 352, 530
HinfI GANTC 2 cut(s) 11, 117
HpaII CCGG 4 cut(s) 138, 207, 381, 440
HphI GGTGA 3 cut(s) 100, 112, 178
Hpy166II GTNNAC 2 cut(s) 316, 337
Hpy188I TCNGA 2 cut(s) 89, 287
Hpy188III TCNNGA 3 cut(s) 236, 255, 349
Hpy8I GTNNAC 2 cut(s) 316, 337
HpyAV CCTTC 9 cut(s) 451, 460, 466, 472, 478, 484, 490, 496, 520
HpyF10VI GCNNNNNNNGC 4 cut(s) 67, 424, 445, 532
HpyF3I CTNAG 2 cut(s) 37, 302
Hsp92II CATG 5 cut(s) 97, 247, 269, 352, 530
Kzo9I GATC 4 cut(s) 43, 180, 197, 232
LmnI GCTCC 3 cut(s) 146, 209, 412
Lsp1109I GCAGC 1 cut(s) 66
LweI GCATC 1 cut(s) 436
MaeI CTAG 1 cut(s) 74
MaeIII GTNAC 2 cut(s) 12, 118
MalI GATC 4 cut(s) 45, 182, 199, 234
MboI GATC 4 cut(s) 43, 180, 197, 232
MflI RGATCY 1 cut(s) 197
MhlI GDGCHC 1 cut(s) 308
MlyI GAGTC 2 cut(s) 20, 126
MmeI TCCRAC 1 cut(s) 225
MslI CAYNNNNRTG 3 cut(s) 156, 270, 311
MspI CCGG 4 cut(s) 138, 207, 381, 440
MspR9I CCNGG 2 cut(s) 329, 381
MvaI CCWGG 1 cut(s) 329
MwoI GCNNNNNNNGC 4 cut(s) 67, 424, 445, 532
NciI CCSGG 1 cut(s) 381
NdeII GATC 4 cut(s) 43, 180, 197, 232
NlaIII CATG 5 cut(s) 97, 247, 269, 352, 530
NlaIV GGNNCC 3 cut(s) 142, 199, 414
NmuCI GTSAC 2 cut(s) 12, 118
OliI CACNNNNGTG 1 cut(s) 311
PagI TCATGA 1 cut(s) 348
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PflFI GACNNNGTC 1 cut(s) 95
PkrI GCNGC 2 cut(s) 56, 417
PleI GAGTC 2 cut(s) 19, 125
PpsI GAGTC 2 cut(s) 19, 125
Psp6I CCWGG 1 cut(s) 327
PspGI CCWGG 1 cut(s) 327
PspN4I GGNNCC 3 cut(s) 142, 199, 414
PspPI GGNCC 2 cut(s) 60, 275
PsuI RGATCY 1 cut(s) 197
PsyI GACNNNGTC 1 cut(s) 95
RseI CAYNNNNRTG 3 cut(s) 156, 270, 311
SatI GCNGC 2 cut(s) 55, 416
Sau3AI GATC 4 cut(s) 43, 180, 197, 232
Sau96I GGNCC 2 cut(s) 60, 275
SchI GAGTC 2 cut(s) 20, 126
ScrFI CCNGG 2 cut(s) 329, 381
SduI GDGCHC 1 cut(s) 308
SetI ASST 3 cut(s) 231, 365, 512
SfaNI GCATC 1 cut(s) 436
SinI GGWCC 1 cut(s) 275
SmiMI CAYNNNNRTG 3 cut(s) 156, 270, 311
SsiI CCGC 4 cut(s) 102, 357, 416, 448
SspMI CTAG 1 cut(s) 74
StyD4I CCNGG 2 cut(s) 327, 379
TauI GCSGC 1 cut(s) 418
TseFI GTSAC 2 cut(s) 12, 118
TseI GCWGC 1 cut(s) 54
Tsp45I GTSAC 2 cut(s) 12, 118
TspDTI ATGAA 3 cut(s) 254, 260, 377
TspGWI ACGGA 3 cut(s) 63, 416, 435
Tth111I GACNNNGTC 1 cut(s) 95
VpaK11BI GGWCC 1 cut(s) 275
XspI CTAG 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.