Rw7G007810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0015303
Physical Location & Seq
Forward (+)
7142488 .. 7143789
1302 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G007810.1

Sequence Viewer

Length: 711 bp
ATGTCGACCGAGGCAGCCAAGCCCACTGGCTACAAGCAACTCGACCGCGAGCTCCGTGAAATGATCACTTCCATCACCAACCGCGTGACCGATCTTCACAAGTCCGGCTCGGGCCACGGCCACGAGGAGGACGAGGACGAGCATGGTGTGAGGATCATCACCCTTGCCGGAAACAACACCGGAGCCACATTGCGGAGTGAGTTGGATGATCATCAGGACAATCATCGTAAACGTGGCGGCCATCATGGTCTTCATCTAGGAGGTCCTGATGAAGACCCCGAGGGGCTGAGCACATATGTGAACAGCAACTTCCAAGCCATCAACAACTCGCTCGTGATGGGGGGTAGCTACACCACTAATGATCCGGGTGTTCATCTCGACATTACTGATTTTTTCGAACCACATGGGCATAGTAAGCCGGAGAAGAAGGGGTGGAAGGGTAAGAAGAAAGAGAAGAGCGACCAGCATCAGGAGCATGATGATGAGTGGCCGTTCTGGAGGCTTCATGCGCCTCCTCTCCAGCGTCCGCTCAAGCGCACGAGCCTTCCTCTCCATGGCTGCAAGCCGCTCATCTTTCGACAGAACTTTTTTCCAATGTGTGCTGCCAATCCTAGTCGGCGATTGGTGGAAGAGAGATCTGGTGCAGGCACGATGGGGATTGCTGGTGCTGGGTTTCACTTGGATCTGGTTCGGGCGGCGACATTGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

236

Amino Acids

26.28

Weight (kDa)

6.49

Isoelectric Point (pI)

31.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63310
fragaria_vesca FvH4_5g10310
malus_domestica MD00G1118700.v1.1 MD06G1125100.v1.1
prunus_persica Prupe.5G135700_v2.0.a1
pyrus_communis pycom14g11720
rosa_chinensis RchiOBHm_Chr7g0187911
rosa_laevigata RLG00000004748
rosa_multiflora Rmu_co8094926.1_g000001
rosa_roxburghii Rroxscaffold_3G00266950
rosa_rugosa Rorug06G0485300
rosa_samantha Rh7AG090500 Rh7BG092100 Rh7CG091200 Rh7DG092900
rosa_wichuraiana Rw7G007810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 529, 568
AccI GTMKAC 1 cut(s) 5
AccII CGCG 2 cut(s) 48, 84
AciI CCGC 7 cut(s) 46, 82, 193, 237, 527, 566, 695
AclWI GGATC 3 cut(s) 161, 356, 690
AcoI YGGCCR 3 cut(s) 118, 238, 488
AfiI CCNNNNNNNGG 4 cut(s) 127, 192, 469, 554
AleI CACNNNNGTG 1 cut(s) 296
AluBI AGCT 2 cut(s) 52, 348
AluI AGCT 2 cut(s) 52, 348
Alw21I GWGCWC 2 cut(s) 54, 293
AlwI GGATC 3 cut(s) 161, 356, 690
Ama87I CYCGRG 2 cut(s) 109, 278
AoxI GGCC 4 cut(s) 112, 118, 238, 488
ApeKI GCWGC 3 cut(s) 14, 558, 602
AspLEI GCGC 2 cut(s) 511, 537
AspS9I GGNCC 2 cut(s) 112, 263
AsuC2I CCSGG 1 cut(s) 366
AsuHPI GGTGA 2 cut(s) 67, 151
AsuII TTCGAA 1 cut(s) 396
AvaI CYCGRG 2 cut(s) 109, 278
AvaII GGWCC 1 cut(s) 263
BanII GRGCYC 1 cut(s) 54
BauI CACGAG 3 cut(s) 122, 332, 538
BbsI GAAGAC 2 cut(s) 242, 279
Bbv12I GWGCWC 2 cut(s) 54, 293
BbvI GCAGC 3 cut(s) 26, 545, 589
BccI CCATC 5 cut(s) 80, 249, 326, 331, 646
BceAI ACGGC 2 cut(s) 133, 475
BclI TGATCA 2 cut(s) 63, 208
BcnI CCSGG 1 cut(s) 366
BfaI CTAG 2 cut(s) 257, 612
BglII AGATCT 1 cut(s) 635
BisI GCNGC 6 cut(s) 15, 238, 559, 566, 603, 696
BlpI GCTNAGC 1 cut(s) 287
BlsI GCNGC 6 cut(s) 16, 239, 560, 567, 604, 697
Bme1390I CCNGG 1 cut(s) 366
Bme18I GGWCC 1 cut(s) 263
BmeT110I CYCGRG 2 cut(s) 109, 278
BmgT120I GGNCC 2 cut(s) 112, 263
BmiI GGNNCC 1 cut(s) 184
BmrFI CCNGG 1 cut(s) 366
BmsI GCATC 1 cut(s) 475
BpiI GAAGAC 2 cut(s) 242, 279
BplI GAGNNNNNCTC 2 cut(s) 532, 564
BpmI CTGGAG 2 cut(s) 503, 517
Bpu1102I GCTNAGC 1 cut(s) 287
Bpu14I TTCGAA 1 cut(s) 396
BpuEI CTTGAG 1 cut(s) 515
BpuMI CCSGG 1 cut(s) 366
BsaBI GATNNNNATC 1 cut(s) 210
BsaJI CCNNGG 4 cut(s) 9, 115, 279, 553
BsaWI WCCGGW 1 cut(s) 179
Bsc4I CCNNNNNNNGG 4 cut(s) 127, 192, 469, 554
Bse1I ACTGG 1 cut(s) 31
Bse3DI GCAATG 1 cut(s) 188
Bse8I GATNNNNATC 1 cut(s) 210
BseDI CCNNGG 4 cut(s) 9, 115, 279, 553
BseGI GGATG 1 cut(s) 211
BseJI GATNNNNATC 1 cut(s) 210
BseLI CCNNNNNNNGG 4 cut(s) 127, 192, 469, 554
BseMI GCAATG 1 cut(s) 188
BseMII CTCAG 1 cut(s) 278
BseNI ACTGG 1 cut(s) 31
BseRI GAGGAG 2 cut(s) 140, 504
BseXI GCAGC 3 cut(s) 26, 545, 589
BseYI CCCAGC 1 cut(s) 668
BsgI GTGCAG 1 cut(s) 663
Bsh1236I CGCG 2 cut(s) 48, 84
Bsh1285I CGRYCG 2 cut(s) 9, 46
BshFI GGCC 4 cut(s) 114, 120, 240, 490
BsiEI CGRYCG 2 cut(s) 9, 46
BsiHKAI GWGCWC 2 cut(s) 54, 293
BsiHKCI CYCGRG 2 cut(s) 109, 278
BsiSI CCGG 5 cut(s) 105, 168, 180, 365, 419
BslI CCNNNNNNNGG 4 cut(s) 127, 192, 469, 554
BsnI GGCC 4 cut(s) 114, 120, 240, 490
BsoBI CYCGRG 2 cut(s) 109, 278
Bsp119I TTCGAA 1 cut(s) 396
Bsp1286I GDGCHC 2 cut(s) 54, 293
Bsp143I GATC 7 cut(s) 63, 91, 153, 208, 361, 635, 682
Bsp1720I GCTNAGC 1 cut(s) 287
Bsp19I CCATGG 1 cut(s) 553
BspACI CCGC 7 cut(s) 46, 82, 193, 237, 527, 566, 695
BspANI GGCC 4 cut(s) 114, 120, 240, 490
BspCNI CTCAG 1 cut(s) 279
BspFNI CGCG 2 cut(s) 48, 84
BspLI GGNNCC 1 cut(s) 184
BspPI GGATC 3 cut(s) 161, 356, 690
BspQI GCTCTTC 1 cut(s) 449
BspT104I TTCGAA 1 cut(s) 396
BsrBI CCGCTC 2 cut(s) 529, 568
BsrDI GCAATG 1 cut(s) 188
BsrI ACTGG 1 cut(s) 31
BssECI CCNNGG 4 cut(s) 9, 115, 279, 553
BssMI GATC 7 cut(s) 63, 91, 153, 208, 361, 635, 682
BssSI CACGAG 3 cut(s) 122, 332, 538
BssT1I CCWWGG 1 cut(s) 553
Bst2BI CACGAG 3 cut(s) 122, 332, 538
Bst6I CTCTTC 2 cut(s) 449, 624
BstBI TTCGAA 1 cut(s) 396
BstC8I GCNNGC 3 cut(s) 50, 563, 646
BstDEI CTNAG 1 cut(s) 287
BstDSI CCRYGG 2 cut(s) 115, 553
BstF5I GGATG 1 cut(s) 211
BstFNI CGCG 2 cut(s) 48, 84
BstHHI GCGC 2 cut(s) 511, 537
BstKTI GATC 7 cut(s) 66, 94, 156, 211, 364, 638, 685
BstMBI GATC 7 cut(s) 63, 91, 153, 208, 361, 635, 682
BstMCI CGRYCG 2 cut(s) 9, 46
BstMWI GCNNNNNNNGC 3 cut(s) 415, 472, 508
BstSCI CCNGG 1 cut(s) 364
BstUI CGCG 2 cut(s) 48, 84
BstV1I GCAGC 3 cut(s) 26, 545, 589
BstV2I GAAGAC 2 cut(s) 242, 279
BstX2I RGATCY 2 cut(s) 635, 682
BstYI RGATCY 2 cut(s) 635, 682
BsuRI GGCC 4 cut(s) 114, 120, 240, 490
BtgI CCRYGG 2 cut(s) 115, 553
BtsCI GGATG 1 cut(s) 211
BtsIMutI CAGTG 1 cut(s) 24
Cac8I GCNNGC 3 cut(s) 50, 563, 646
CfoI GCGC 2 cut(s) 511, 537
Cfr13I GGNCC 2 cut(s) 112, 263
CseI GACGC 1 cut(s) 512
CviAII CATG 6 cut(s) 143, 245, 404, 476, 506, 554
DdeI CTNAG 1 cut(s) 287
DpnI GATC 7 cut(s) 65, 93, 155, 210, 363, 637, 684
DpnII GATC 7 cut(s) 63, 91, 153, 208, 361, 635, 682
EaeI YGGCCR 3 cut(s) 118, 238, 488
Eam1104I CTCTTC 2 cut(s) 449, 624
EarI CTCTTC 2 cut(s) 449, 624
Ecl136II GAGCTC 1 cut(s) 52
Eco130I CCWWGG 1 cut(s) 553
Eco24I GRGCYC 1 cut(s) 54
Eco47I GGWCC 1 cut(s) 263
Eco53kI GAGCTC 1 cut(s) 52
Eco88I CYCGRG 2 cut(s) 109, 278
EcoICRI GAGCTC 1 cut(s) 52
EcoO109I RGGNCCY 1 cut(s) 263
EcoT14I CCWWGG 1 cut(s) 553
EcoT38I GRGCYC 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 553
FaeI CATG 6 cut(s) 146, 248, 407, 479, 509, 557
FatI CATG 6 cut(s) 142, 244, 403, 475, 505, 553
FauNDI CATATG 1 cut(s) 295
FbaI TGATCA 2 cut(s) 63, 208
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 6 cut(s) 15, 238, 559, 566, 603, 696
FokI GGATG 1 cut(s) 218
FriOI GRGCYC 1 cut(s) 54
Fsp4HI GCNGC 6 cut(s) 15, 238, 559, 566, 603, 696
FspBI CTAG 2 cut(s) 257, 612
GlaI GCGC 2 cut(s) 510, 536
GluI GCNGC 6 cut(s) 15, 238, 559, 566, 603, 696
GsaI CCCAGC 1 cut(s) 672
GsuI CTGGAG 2 cut(s) 503, 517
HaeIII GGCC 4 cut(s) 114, 120, 240, 490
HapII CCGG 5 cut(s) 105, 168, 180, 365, 419
HgaI GACGC 1 cut(s) 512
HhaI GCGC 2 cut(s) 511, 537
Hin1II CATG 6 cut(s) 146, 248, 407, 479, 509, 557
Hin6I GCGC 2 cut(s) 509, 535
HinP1I GCGC 2 cut(s) 509, 535
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HpaII CCGG 5 cut(s) 105, 168, 180, 365, 419
HphI GGTGA 2 cut(s) 67, 151
Hpy166II GTNNAC 3 cut(s) 6, 230, 301
Hpy188III TCNNGA 6 cut(s) 215, 266, 334, 377, 470, 496
Hpy8I GTNNAC 3 cut(s) 6, 230, 301
HpyAV CCTTC 3 cut(s) 421, 430, 554
HpyCH4IV ACGT 1 cut(s) 232
HpyCH4V TGCA 2 cut(s) 561, 644
HpyF10VI GCNNNNNNNGC 3 cut(s) 415, 472, 508
HpyF3I CTNAG 1 cut(s) 287
HpySE526I ACGT 1 cut(s) 232
Hsp92II CATG 6 cut(s) 146, 248, 407, 479, 509, 557
HspAI GCGC 2 cut(s) 509, 535
Ksp22I TGATCA 2 cut(s) 63, 208
Kzo9I GATC 7 cut(s) 63, 91, 153, 208, 361, 635, 682
LguI GCTCTTC 1 cut(s) 449
LmnI GCTCC 3 cut(s) 57, 182, 472
Lsp1109I GCAGC 3 cut(s) 26, 545, 589
LweI GCATC 1 cut(s) 475
MaeI CTAG 2 cut(s) 257, 612
MaeII ACGT 1 cut(s) 232
MaeIII GTNAC 1 cut(s) 85
MalI GATC 7 cut(s) 65, 93, 155, 210, 363, 637, 684
MbiI CCGCTC 2 cut(s) 529, 568
MboI GATC 7 cut(s) 63, 91, 153, 208, 361, 635, 682
MboII GAAGA 7 cut(s) 86, 242, 284, 436, 457, 466, 641
MflI RGATCY 2 cut(s) 635, 682
MhlI GDGCHC 2 cut(s) 54, 293
MmeI TCCRAC 1 cut(s) 183
MslI CAYNNNNRTG 2 cut(s) 296, 480
MspI CCGG 5 cut(s) 105, 168, 180, 365, 419
MspR9I CCNGG 1 cut(s) 366
MvnI CGCG 2 cut(s) 48, 84
MwoI GCNNNNNNNGC 3 cut(s) 415, 472, 508
NciI CCSGG 1 cut(s) 366
NcoI CCATGG 1 cut(s) 553
NdeI CATATG 1 cut(s) 295
NdeII GATC 7 cut(s) 63, 91, 153, 208, 361, 635, 682
NlaIII CATG 6 cut(s) 146, 248, 407, 479, 509, 557
NlaIV GGNNCC 1 cut(s) 184
NmuCI GTSAC 1 cut(s) 85
NspV TTCGAA 1 cut(s) 396
OliI CACNNNNGTG 1 cut(s) 296
PciSI GCTCTTC 1 cut(s) 449
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PkrI GCNGC 6 cut(s) 16, 239, 560, 567, 604, 697
PpuMI RGGWCCY 1 cut(s) 263
Psp124BI GAGCTC 1 cut(s) 54
Psp5II RGGWCCY 1 cut(s) 263
PspFI CCCAGC 1 cut(s) 668
PspN4I GGNNCC 1 cut(s) 184
PspPI GGNCC 2 cut(s) 112, 263
PspPPI RGGWCCY 1 cut(s) 263
PsuI RGATCY 2 cut(s) 635, 682
RseI CAYNNNNRTG 2 cut(s) 296, 480
SacI GAGCTC 1 cut(s) 54
SalI GTCGAC 1 cut(s) 4
SapI GCTCTTC 1 cut(s) 449
SatI GCNGC 6 cut(s) 15, 238, 559, 566, 603, 696
Sau3AI GATC 7 cut(s) 63, 91, 153, 208, 361, 635, 682
Sau96I GGNCC 2 cut(s) 112, 263
ScrFI CCNGG 1 cut(s) 366
SduI GDGCHC 2 cut(s) 54, 293
SetI ASST 4 cut(s) 54, 235, 265, 350
SfaNI GCATC 1 cut(s) 475
SfuI TTCGAA 1 cut(s) 396
SinI GGWCC 1 cut(s) 263
SmiMI CAYNNNNRTG 2 cut(s) 296, 480
SmlI CTYRAG 1 cut(s) 530
SmoI CTYRAG 1 cut(s) 530
SsiI CCGC 7 cut(s) 46, 82, 193, 237, 527, 566, 695
SspMI CTAG 2 cut(s) 257, 612
SstI GAGCTC 1 cut(s) 54
StyD4I CCNGG 1 cut(s) 364
StyI CCWWGG 1 cut(s) 553
TaiI ACGT 1 cut(s) 235
TaqI TCGA 5 cut(s) 5, 42, 378, 396, 577
TaqII GACCGA 2 cut(s) 23, 104
TauI GCSGC 3 cut(s) 240, 568, 698
TscAI CASTG 1 cut(s) 31
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 3 cut(s) 14, 558, 602
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 4 cut(s) 242, 285, 362, 494
TspGWI ACGGA 1 cut(s) 44
TspRI CASTG 1 cut(s) 31
VpaK11BI GGWCC 1 cut(s) 263
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 2 cut(s) 257, 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.