Rroxscaffold_3G00266950

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0015303
Physical Location & Seq
Reverse (-)
60123043 .. 60123531
489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00266950.1

Sequence Viewer

Length: 489 bp
ATGTCGACCGAGGCAGCCAAGCCCACTGGCTACAAGCAACTCGACCGCGAGCTCCGTGAAATGATCACTTCCATCACCAACCGCGTGACCGATCTTCACAAGTCAGGCTCGGCCCACGGCCACGAGGAGGACGAGGACGAGCATGGTGTGAGGATCATCACCCTTGCCGGAAACAACACCGGAGCCACATTGCGGAGCGAGTTGGATGCTCATCAGGACAATCATCGTAAACGTGGCGGCCATCATGGTCTTCATCTAGGAGGTCCTGATGAAGACCCCGAGGGCCTGAGCACATATGTGAACAGCAACTTCCAAGCCATCAACAACTCGCTCGTGATGGGGGGTAGCTACACCACTAATGATCCGGGTGTTCATCTCGACATTACGGATTTTTTCGAACCACATGGGCATAGTAAGCCGGAAAAGAAGGGGTGGAAGGGTAAGAAGAAAGAGAAGAGCGACCAGCATCAGGAGCACGATGATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

17.99

Weight (kDa)

5.73

Isoelectric Point (pI)

23.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63310
fragaria_vesca FvH4_5g10310
malus_domestica MD00G1118700.v1.1 MD06G1125100.v1.1
prunus_persica Prupe.5G135700_v2.0.a1
pyrus_communis pycom14g11720
rosa_chinensis RchiOBHm_Chr7g0187911
rosa_laevigata RLG00000004748
rosa_multiflora Rmu_co8094926.1_g000001
rosa_roxburghii Rroxscaffold_3G00266950
rosa_rugosa Rorug06G0485300
rosa_samantha Rh7AG090500 Rh7BG092100 Rh7CG091200 Rh7DG092900
rosa_wichuraiana Rw7G007810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 5
AccII CGCG 2 cut(s) 48, 84
AciI CCGC 4 cut(s) 46, 82, 193, 237
AclWI GGATC 2 cut(s) 161, 356
AcoI YGGCCR 2 cut(s) 118, 238
AfiI CCNNNNNNNGG 3 cut(s) 127, 192, 469
AleI CACNNNNGTG 1 cut(s) 296
AluBI AGCT 2 cut(s) 52, 348
AluI AGCT 2 cut(s) 52, 348
Alw21I GWGCWC 3 cut(s) 54, 293, 477
AlwI GGATC 2 cut(s) 161, 356
Ama87I CYCGRG 1 cut(s) 278
AoxI GGCC 4 cut(s) 111, 118, 238, 283
ApeKI GCWGC 1 cut(s) 14
AspS9I GGNCC 3 cut(s) 112, 263, 283
AsuC2I CCSGG 1 cut(s) 366
AsuHPI GGTGA 2 cut(s) 67, 151
AsuII TTCGAA 1 cut(s) 396
AvaI CYCGRG 1 cut(s) 278
AvaII GGWCC 1 cut(s) 263
BanII GRGCYC 1 cut(s) 54
BauI CACGAG 2 cut(s) 122, 332
BbsI GAAGAC 2 cut(s) 242, 279
Bbv12I GWGCWC 3 cut(s) 54, 293, 477
BbvI GCAGC 1 cut(s) 26
BccI CCATC 4 cut(s) 80, 249, 326, 331
BceAI ACGGC 1 cut(s) 133
BcgI CGANNNNNNTGC 2 cut(s) 188, 222
BclI TGATCA 1 cut(s) 63
BcnI CCSGG 1 cut(s) 366
BfaI CTAG 1 cut(s) 257
BisI GCNGC 2 cut(s) 15, 238
BlsI GCNGC 2 cut(s) 16, 239
Bme1390I CCNGG 1 cut(s) 366
Bme18I GGWCC 1 cut(s) 263
BmeT110I CYCGRG 1 cut(s) 278
BmgT120I GGNCC 3 cut(s) 112, 263, 283
BmiI GGNNCC 1 cut(s) 184
BmrFI CCNGG 1 cut(s) 366
BmsI GCATC 2 cut(s) 196, 475
BpiI GAAGAC 2 cut(s) 242, 279
Bpu10I CCTNAGC 1 cut(s) 287
Bpu14I TTCGAA 1 cut(s) 396
BpuMI CCSGG 1 cut(s) 366
BsaBI GATNNNNATC 1 cut(s) 210
BsaJI CCNNGG 3 cut(s) 9, 115, 279
BsaWI WCCGGW 1 cut(s) 179
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 192, 469
Bse1I ACTGG 1 cut(s) 31
Bse3DI GCAATG 1 cut(s) 188
Bse8I GATNNNNATC 1 cut(s) 210
BseDI CCNNGG 3 cut(s) 9, 115, 279
BseGI GGATG 1 cut(s) 211
BseJI GATNNNNATC 1 cut(s) 210
BseLI CCNNNNNNNGG 3 cut(s) 127, 192, 469
BseMI GCAATG 1 cut(s) 188
BseMII CTCAG 1 cut(s) 278
BseNI ACTGG 1 cut(s) 31
BseRI GAGGAG 1 cut(s) 140
BseXI GCAGC 1 cut(s) 26
Bsh1236I CGCG 2 cut(s) 48, 84
Bsh1285I CGRYCG 2 cut(s) 9, 46
BshFI GGCC 4 cut(s) 113, 120, 240, 285
BsiEI CGRYCG 2 cut(s) 9, 46
BsiHKAI GWGCWC 3 cut(s) 54, 293, 477
BsiHKCI CYCGRG 1 cut(s) 278
BsiSI CCGG 4 cut(s) 168, 180, 365, 419
BslI CCNNNNNNNGG 3 cut(s) 127, 192, 469
BsnI GGCC 4 cut(s) 113, 120, 240, 285
BsoBI CYCGRG 1 cut(s) 278
Bsp119I TTCGAA 1 cut(s) 396
Bsp1286I GDGCHC 3 cut(s) 54, 293, 477
Bsp143I GATC 4 cut(s) 63, 91, 153, 361
BspACI CCGC 4 cut(s) 46, 82, 193, 237
BspANI GGCC 4 cut(s) 113, 120, 240, 285
BspCNI CTCAG 1 cut(s) 279
BspFNI CGCG 2 cut(s) 48, 84
BspLI GGNNCC 1 cut(s) 184
BspPI GGATC 2 cut(s) 161, 356
BspQI GCTCTTC 1 cut(s) 449
BspT104I TTCGAA 1 cut(s) 396
BsrDI GCAATG 1 cut(s) 188
BsrI ACTGG 1 cut(s) 31
BssECI CCNNGG 3 cut(s) 9, 115, 279
BssMI GATC 4 cut(s) 63, 91, 153, 361
BssSI CACGAG 2 cut(s) 122, 332
Bst2BI CACGAG 2 cut(s) 122, 332
Bst6I CTCTTC 1 cut(s) 449
BstBI TTCGAA 1 cut(s) 396
BstC8I GCNNGC 1 cut(s) 50
BstDEI CTNAG 1 cut(s) 287
BstDSI CCRYGG 1 cut(s) 115
BstF5I GGATG 1 cut(s) 211
BstFNI CGCG 2 cut(s) 48, 84
BstKTI GATC 4 cut(s) 66, 94, 156, 364
BstMBI GATC 4 cut(s) 63, 91, 153, 361
BstMCI CGRYCG 2 cut(s) 9, 46
BstMWI GCNNNNNNNGC 2 cut(s) 415, 472
BstSCI CCNGG 1 cut(s) 364
BstUI CGCG 2 cut(s) 48, 84
BstV1I GCAGC 1 cut(s) 26
BstV2I GAAGAC 2 cut(s) 242, 279
BsuRI GGCC 4 cut(s) 113, 120, 240, 285
BtgI CCRYGG 1 cut(s) 115
BtsCI GGATG 1 cut(s) 211
BtsIMutI CAGTG 1 cut(s) 24
Cac8I GCNNGC 1 cut(s) 50
Cfr13I GGNCC 3 cut(s) 112, 263, 283
CviAII CATG 3 cut(s) 143, 245, 404
DdeI CTNAG 1 cut(s) 287
DpnI GATC 4 cut(s) 65, 93, 155, 363
DpnII GATC 4 cut(s) 63, 91, 153, 361
EaeI YGGCCR 2 cut(s) 118, 238
Eam1104I CTCTTC 1 cut(s) 449
EarI CTCTTC 1 cut(s) 449
Ecl136II GAGCTC 1 cut(s) 52
Eco24I GRGCYC 1 cut(s) 54
Eco47I GGWCC 1 cut(s) 263
Eco53kI GAGCTC 1 cut(s) 52
Eco88I CYCGRG 1 cut(s) 278
EcoICRI GAGCTC 1 cut(s) 52
EcoO109I RGGNCCY 2 cut(s) 263, 283
EcoT38I GRGCYC 1 cut(s) 54
FaeI CATG 3 cut(s) 146, 248, 407
FaiI YATR 6 cut(s) 144, 246, 295, 297, 405, 411
FatI CATG 3 cut(s) 142, 244, 403
FauNDI CATATG 1 cut(s) 295
FbaI TGATCA 1 cut(s) 63
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 2 cut(s) 15, 238
FokI GGATG 1 cut(s) 218
FriOI GRGCYC 1 cut(s) 54
Fsp4HI GCNGC 2 cut(s) 15, 238
FspBI CTAG 1 cut(s) 257
GluI GCNGC 2 cut(s) 15, 238
HaeIII GGCC 4 cut(s) 113, 120, 240, 285
HapII CCGG 4 cut(s) 168, 180, 365, 419
Hin1II CATG 3 cut(s) 146, 248, 407
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HpaII CCGG 4 cut(s) 168, 180, 365, 419
HphI GGTGA 2 cut(s) 67, 151
Hpy166II GTNNAC 3 cut(s) 6, 230, 301
Hpy188III TCNNGA 5 cut(s) 215, 266, 334, 377, 470
Hpy8I GTNNAC 3 cut(s) 6, 230, 301
HpyAV CCTTC 2 cut(s) 421, 430
HpyCH4IV ACGT 1 cut(s) 232
HpyF10VI GCNNNNNNNGC 2 cut(s) 415, 472
HpyF3I CTNAG 1 cut(s) 287
HpySE526I ACGT 1 cut(s) 232
Hsp92II CATG 3 cut(s) 146, 248, 407
Ksp22I TGATCA 1 cut(s) 63
Kzo9I GATC 4 cut(s) 63, 91, 153, 361
LguI GCTCTTC 1 cut(s) 449
LmnI GCTCC 4 cut(s) 57, 182, 195, 472
Lsp1109I GCAGC 1 cut(s) 26
LweI GCATC 2 cut(s) 196, 475
MaeI CTAG 1 cut(s) 257
MaeII ACGT 1 cut(s) 232
MaeIII GTNAC 1 cut(s) 85
MalI GATC 4 cut(s) 65, 93, 155, 363
MboI GATC 4 cut(s) 63, 91, 153, 361
MboII GAAGA 5 cut(s) 86, 242, 284, 457, 466
MhlI GDGCHC 3 cut(s) 54, 293, 477
MmeI TCCRAC 1 cut(s) 183
MnlI CCTC 7 cut(s) 4, 118, 121, 127, 144, 254, 274
MslI CAYNNNNRTG 2 cut(s) 296, 480
MspI CCGG 4 cut(s) 168, 180, 365, 419
MspR9I CCNGG 1 cut(s) 366
MvnI CGCG 2 cut(s) 48, 84
MwoI GCNNNNNNNGC 2 cut(s) 415, 472
NciI CCSGG 1 cut(s) 366
NdeI CATATG 1 cut(s) 295
NdeII GATC 4 cut(s) 63, 91, 153, 361
NlaIII CATG 3 cut(s) 146, 248, 407
NlaIV GGNNCC 1 cut(s) 184
NmeAIII GCCGAG 1 cut(s) 89
NmuCI GTSAC 1 cut(s) 85
NspV TTCGAA 1 cut(s) 396
OliI CACNNNNGTG 1 cut(s) 296
PciSI GCTCTTC 1 cut(s) 449
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PkrI GCNGC 2 cut(s) 16, 239
PpuMI RGGWCCY 1 cut(s) 263
Psp124BI GAGCTC 1 cut(s) 54
Psp5II RGGWCCY 1 cut(s) 263
PspN4I GGNNCC 1 cut(s) 184
PspPI GGNCC 3 cut(s) 112, 263, 283
PspPPI RGGWCCY 1 cut(s) 263
RseI CAYNNNNRTG 2 cut(s) 296, 480
SacI GAGCTC 1 cut(s) 54
SalI GTCGAC 1 cut(s) 4
SapI GCTCTTC 1 cut(s) 449
SatI GCNGC 2 cut(s) 15, 238
Sau3AI GATC 4 cut(s) 63, 91, 153, 361
Sau96I GGNCC 3 cut(s) 112, 263, 283
ScrFI CCNGG 1 cut(s) 366
SduI GDGCHC 3 cut(s) 54, 293, 477
SetI ASST 4 cut(s) 54, 235, 265, 350
SfaNI GCATC 2 cut(s) 196, 475
SfuI TTCGAA 1 cut(s) 396
SinI GGWCC 1 cut(s) 263
SmiMI CAYNNNNRTG 2 cut(s) 296, 480
SsiI CCGC 4 cut(s) 46, 82, 193, 237
SspMI CTAG 1 cut(s) 257
SstI GAGCTC 1 cut(s) 54
StyD4I CCNGG 1 cut(s) 364
TaiI ACGT 1 cut(s) 235
TaqI TCGA 4 cut(s) 5, 42, 378, 396
TaqII GACCGA 2 cut(s) 23, 104
TauI GCSGC 1 cut(s) 240
TscAI CASTG 1 cut(s) 31
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 1 cut(s) 14
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 3 cut(s) 242, 285, 362
TspGWI ACGGA 2 cut(s) 44, 401
TspRI CASTG 1 cut(s) 31
VpaK11BI GGWCC 1 cut(s) 263
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.