Rmu_co8094926.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8094926.1
OG0015303
Physical Location & Seq
Reverse (-)
2 .. 236
235 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8094926.1_g000001.1.cds

Sequence Viewer

Length: 235 bp
atgtcgaccgaggcagccaagcccactggctacaagcaactcgaccgcgagctccgtgaaatgatcacttccatcaccaaccgcgtgaccgatcttcacaagtccggctcgggccacggccacgaggaggacgaggacgagcatggtgtgaggatcatcacccttgccggaaacaacaccggagccacattgcggagtgagttggatgatcatcaggacaatcatcgtaaacgtg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.78

Weight (kDa)

5.81

Isoelectric Point (pI)

37.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63310
fragaria_vesca FvH4_5g10310
malus_domestica MD00G1118700.v1.1 MD06G1125100.v1.1
prunus_persica Prupe.5G135700_v2.0.a1
pyrus_communis pycom14g11720
rosa_chinensis RchiOBHm_Chr7g0187911
rosa_laevigata RLG00000004748
rosa_multiflora Rmu_co8094926.1_g000001
rosa_roxburghii Rroxscaffold_3G00266950
rosa_rugosa Rorug06G0485300
rosa_samantha Rh7AG090500 Rh7BG092100 Rh7CG091200 Rh7DG092900
rosa_wichuraiana Rw7G007810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 5
AccII CGCG 2 cut(s) 48, 84
AciI CCGC 3 cut(s) 46, 82, 193
AclWI GGATC 1 cut(s) 161
AcoI YGGCCR 1 cut(s) 118
AfiI CCNNNNNNNGG 2 cut(s) 127, 192
AluBI AGCT 1 cut(s) 52
AluI AGCT 1 cut(s) 52
Alw21I GWGCWC 1 cut(s) 54
AlwI GGATC 1 cut(s) 161
Ama87I CYCGRG 1 cut(s) 109
AoxI GGCC 2 cut(s) 112, 118
ApeKI GCWGC 1 cut(s) 14
AspS9I GGNCC 1 cut(s) 112
AsuHPI GGTGA 2 cut(s) 67, 151
AvaI CYCGRG 1 cut(s) 109
BanII GRGCYC 1 cut(s) 54
BauI CACGAG 1 cut(s) 122
Bbv12I GWGCWC 1 cut(s) 54
BbvI GCAGC 1 cut(s) 26
BccI CCATC 1 cut(s) 80
BceAI ACGGC 1 cut(s) 133
BclI TGATCA 2 cut(s) 63, 208
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
BmeT110I CYCGRG 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 1 cut(s) 184
BsaBI GATNNNNATC 1 cut(s) 210
BsaJI CCNNGG 2 cut(s) 9, 115
BsaWI WCCGGW 1 cut(s) 179
Bsc4I CCNNNNNNNGG 2 cut(s) 127, 192
Bse1I ACTGG 1 cut(s) 31
Bse3DI GCAATG 1 cut(s) 188
Bse8I GATNNNNATC 1 cut(s) 210
BseDI CCNNGG 2 cut(s) 9, 115
BseGI GGATG 1 cut(s) 211
BseJI GATNNNNATC 1 cut(s) 210
BseLI CCNNNNNNNGG 2 cut(s) 127, 192
BseMI GCAATG 1 cut(s) 188
BseNI ACTGG 1 cut(s) 31
BseRI GAGGAG 1 cut(s) 140
BseXI GCAGC 1 cut(s) 26
Bsh1236I CGCG 2 cut(s) 48, 84
Bsh1285I CGRYCG 2 cut(s) 9, 46
BshFI GGCC 2 cut(s) 114, 120
BsiEI CGRYCG 2 cut(s) 9, 46
BsiHKAI GWGCWC 1 cut(s) 54
BsiHKCI CYCGRG 1 cut(s) 109
BsiSI CCGG 3 cut(s) 105, 168, 180
BslI CCNNNNNNNGG 2 cut(s) 127, 192
BsnI GGCC 2 cut(s) 114, 120
BsoBI CYCGRG 1 cut(s) 109
Bsp1286I GDGCHC 1 cut(s) 54
Bsp143I GATC 4 cut(s) 63, 91, 153, 208
BspACI CCGC 3 cut(s) 46, 82, 193
BspANI GGCC 2 cut(s) 114, 120
BspFNI CGCG 2 cut(s) 48, 84
BspLI GGNNCC 1 cut(s) 184
BspPI GGATC 1 cut(s) 161
BsrDI GCAATG 1 cut(s) 188
BsrI ACTGG 1 cut(s) 31
BssECI CCNNGG 2 cut(s) 9, 115
BssMI GATC 4 cut(s) 63, 91, 153, 208
BssSI CACGAG 1 cut(s) 122
Bst2BI CACGAG 1 cut(s) 122
BstC8I GCNNGC 1 cut(s) 50
BstDSI CCRYGG 1 cut(s) 115
BstF5I GGATG 1 cut(s) 211
BstFNI CGCG 2 cut(s) 48, 84
BstKTI GATC 4 cut(s) 66, 94, 156, 211
BstMBI GATC 4 cut(s) 63, 91, 153, 208
BstMCI CGRYCG 2 cut(s) 9, 46
BstUI CGCG 2 cut(s) 48, 84
BstV1I GCAGC 1 cut(s) 26
BsuRI GGCC 2 cut(s) 114, 120
BtgI CCRYGG 1 cut(s) 115
BtsCI GGATG 1 cut(s) 211
BtsIMutI CAGTG 1 cut(s) 24
Cac8I GCNNGC 1 cut(s) 50
Cfr13I GGNCC 1 cut(s) 112
CviAII CATG 1 cut(s) 143
CviJI RGCY 8 cut(s) 17, 22, 30, 52, 108, 114, 120, 185
CviKI_1 RGCY 8 cut(s) 17, 22, 30, 52, 108, 114, 120, 185
DpnI GATC 4 cut(s) 65, 93, 155, 210
DpnII GATC 4 cut(s) 63, 91, 153, 208
EaeI YGGCCR 1 cut(s) 118
Ecl136II GAGCTC 1 cut(s) 52
Eco24I GRGCYC 1 cut(s) 54
Eco53kI GAGCTC 1 cut(s) 52
Eco88I CYCGRG 1 cut(s) 109
EcoICRI GAGCTC 1 cut(s) 52
EcoT38I GRGCYC 1 cut(s) 54
FaeI CATG 1 cut(s) 146
FaiI YATR 1 cut(s) 144
FatI CATG 1 cut(s) 142
FbaI TGATCA 2 cut(s) 63, 208
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 15
FokI GGATG 1 cut(s) 218
FriOI GRGCYC 1 cut(s) 54
Fsp4HI GCNGC 1 cut(s) 15
GluI GCNGC 1 cut(s) 15
HaeIII GGCC 2 cut(s) 114, 120
HapII CCGG 3 cut(s) 105, 168, 180
Hin1II CATG 1 cut(s) 146
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HpaII CCGG 3 cut(s) 105, 168, 180
HphI GGTGA 2 cut(s) 67, 151
Hpy166II GTNNAC 2 cut(s) 6, 230
Hpy188III TCNNGA 1 cut(s) 215
Hpy8I GTNNAC 2 cut(s) 6, 230
HpyCH4IV ACGT 1 cut(s) 232
HpySE526I ACGT 1 cut(s) 232
Hsp92II CATG 1 cut(s) 146
Ksp22I TGATCA 2 cut(s) 63, 208
Kzo9I GATC 4 cut(s) 63, 91, 153, 208
LmnI GCTCC 2 cut(s) 57, 182
LpnPI CCDG 5 cut(s) 12, 118, 181, 193, 200
Lsp1109I GCAGC 1 cut(s) 26
MaeII ACGT 1 cut(s) 232
MaeIII GTNAC 1 cut(s) 85
MalI GATC 4 cut(s) 65, 93, 155, 210
MboI GATC 4 cut(s) 63, 91, 153, 208
MboII GAAGA 1 cut(s) 86
MhlI GDGCHC 1 cut(s) 54
MmeI TCCRAC 1 cut(s) 183
MnlI CCTC 5 cut(s) 4, 118, 121, 127, 144
MspI CCGG 3 cut(s) 105, 168, 180
MvnI CGCG 2 cut(s) 48, 84
NdeII GATC 4 cut(s) 63, 91, 153, 208
NlaIII CATG 1 cut(s) 146
NlaIV GGNNCC 1 cut(s) 184
NmuCI GTSAC 1 cut(s) 85
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PkrI GCNGC 1 cut(s) 16
Psp124BI GAGCTC 1 cut(s) 54
PspN4I GGNNCC 1 cut(s) 184
PspPI GGNCC 1 cut(s) 112
SacI GAGCTC 1 cut(s) 54
SalI GTCGAC 1 cut(s) 4
SatI GCNGC 1 cut(s) 15
Sau3AI GATC 4 cut(s) 63, 91, 153, 208
Sau96I GGNCC 1 cut(s) 112
SduI GDGCHC 1 cut(s) 54
SetI ASST 2 cut(s) 54, 235
SsiI CCGC 3 cut(s) 46, 82, 193
SstI GAGCTC 1 cut(s) 54
TaiI ACGT 1 cut(s) 235
TaqI TCGA 2 cut(s) 5, 42
TaqII GACCGA 2 cut(s) 23, 104
TscAI CASTG 1 cut(s) 31
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 1 cut(s) 14
Tsp45I GTSAC 1 cut(s) 85
TspGWI ACGGA 1 cut(s) 44
TspRI CASTG 1 cut(s) 31
XmiI GTMKAC 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.