RLG00000004748

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0015303
Physical Location & Seq
Reverse (-)
61910530 .. 61911111
582 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004748

Sequence Viewer

Length: 582 bp
ATGCAATCTCCCCAAACCTCAACACCTTCAACTCAGAGCACAAACTCATCAGTCATCACCCTCTCCACCCTTGCGTCCTCTTACATCAAAACCATGTCGACCGAGGCAGCCAAGCCCACTGGCTACAAGCAACTCGACCGCGAGATCCGTGAAATGATCACTTCCATCACCAACCGCGTGACCGATCTTCACAAGTCCGGCTCGGCCCACGGCCACGACGAGGACGAGGACGAGCATGGTGTGAGGATCATCACCCTTGCCGGAAACAACACCGGAGCCACATTGCGGAGCGAGTTGGATGATCATCAGGACAATCATCGTAAACGTGGCGGCCATCATGGTTTTCATCCAGGAGGTCCTGATGAAGACCCCGAGGGGCTGAGCACATATGTGAACAGCAACTTCCAAGCCATCAACAACTCGCTCGTGATGGGGGGTAGCTACACCACTAATGATCCGGGTGTTCATCTCGACATTACTGATTTTTTCGAACCACATGGGCATAGTAAGCCGGAGAAGAAGGGGTGGAAGGGTAAGAAGAAAGAGAAAAGCGACCAGCATCAGGAGCATGATGACGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

21.27

Weight (kDa)

5.73

Isoelectric Point (pI)

28.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63310
fragaria_vesca FvH4_5g10310
malus_domestica MD00G1118700.v1.1 MD06G1125100.v1.1
prunus_persica Prupe.5G135700_v2.0.a1
pyrus_communis pycom14g11720
rosa_chinensis RchiOBHm_Chr7g0187911
rosa_laevigata RLG00000004748
rosa_multiflora Rmu_co8094926.1_g000001
rosa_roxburghii Rroxscaffold_3G00266950
rosa_rugosa Rorug06G0485300
rosa_samantha Rh7AG090500 Rh7BG092100 Rh7CG091200 Rh7DG092900
rosa_wichuraiana Rw7G007810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 98
AccII CGCG 2 cut(s) 141, 177
AciI CCGC 4 cut(s) 139, 175, 286, 330
AclWI GGATC 3 cut(s) 139, 254, 449
AcoI YGGCCR 2 cut(s) 211, 331
AfiI CCNNNNNNNGG 3 cut(s) 220, 285, 562
AgsI TTSAA 1 cut(s) 30
AjnI CCWGG 1 cut(s) 349
AleI CACNNNNGTG 1 cut(s) 389
AluBI AGCT 1 cut(s) 441
AluI AGCT 1 cut(s) 441
Alw21I GWGCWC 2 cut(s) 41, 386
AlwI GGATC 3 cut(s) 139, 254, 449
Ama87I CYCGRG 1 cut(s) 371
AoxI GGCC 3 cut(s) 204, 211, 331
ApeKI GCWGC 1 cut(s) 107
AspS9I GGNCC 2 cut(s) 205, 356
AsuC2I CCSGG 1 cut(s) 459
AsuHPI GGTGA 3 cut(s) 49, 160, 244
AsuII TTCGAA 1 cut(s) 489
AvaI CYCGRG 1 cut(s) 371
AvaII GGWCC 1 cut(s) 356
BauI CACGAG 1 cut(s) 425
BbsI GAAGAC 1 cut(s) 372
Bbv12I GWGCWC 2 cut(s) 41, 386
BbvI GCAGC 1 cut(s) 119
BccI CCATC 4 cut(s) 173, 342, 419, 424
BceAI ACGGC 1 cut(s) 226
BciT130I CCWGG 1 cut(s) 351
BclI TGATCA 2 cut(s) 156, 301
BcnI CCSGG 1 cut(s) 459
BisI GCNGC 2 cut(s) 108, 331
BlpI GCTNAGC 1 cut(s) 380
BlsI GCNGC 2 cut(s) 109, 332
Bme1390I CCNGG 2 cut(s) 351, 459
Bme18I GGWCC 1 cut(s) 356
BmeT110I CYCGRG 1 cut(s) 371
BmgT120I GGNCC 2 cut(s) 205, 356
BmiI GGNNCC 1 cut(s) 277
BmrFI CCNGG 2 cut(s) 351, 459
BmsI GCATC 1 cut(s) 568
BpiI GAAGAC 1 cut(s) 372
Bpu1102I GCTNAGC 1 cut(s) 380
Bpu14I TTCGAA 1 cut(s) 489
BpuMI CCSGG 1 cut(s) 459
BsaBI GATNNNNATC 1 cut(s) 303
BsaJI CCNNGG 3 cut(s) 102, 208, 372
BsaWI WCCGGW 1 cut(s) 272
Bsc4I CCNNNNNNNGG 3 cut(s) 220, 285, 562
Bse1I ACTGG 1 cut(s) 124
Bse3DI GCAATG 1 cut(s) 281
Bse8I GATNNNNATC 1 cut(s) 303
BseBI CCWGG 1 cut(s) 351
BseDI CCNNGG 3 cut(s) 102, 208, 372
BseGI GGATG 2 cut(s) 304, 346
BseJI GATNNNNATC 1 cut(s) 303
BseLI CCNNNNNNNGG 3 cut(s) 220, 285, 562
BseMI GCAATG 1 cut(s) 281
BseMII CTCAG 2 cut(s) 47, 371
BseNI ACTGG 1 cut(s) 124
BseXI GCAGC 1 cut(s) 119
Bsh1236I CGCG 2 cut(s) 141, 177
Bsh1285I CGRYCG 2 cut(s) 102, 139
BshFI GGCC 3 cut(s) 206, 213, 333
BsiEI CGRYCG 2 cut(s) 102, 139
BsiHKAI GWGCWC 2 cut(s) 41, 386
BsiHKCI CYCGRG 1 cut(s) 371
BsiSI CCGG 5 cut(s) 198, 261, 273, 458, 512
BslI CCNNNNNNNGG 3 cut(s) 220, 285, 562
BsnI GGCC 3 cut(s) 206, 213, 333
BsoBI CYCGRG 1 cut(s) 371
Bsp119I TTCGAA 1 cut(s) 489
Bsp1286I GDGCHC 2 cut(s) 41, 386
Bsp143I GATC 6 cut(s) 144, 156, 184, 246, 301, 454
Bsp1720I GCTNAGC 1 cut(s) 380
BspACI CCGC 4 cut(s) 139, 175, 286, 330
BspANI GGCC 3 cut(s) 206, 213, 333
BspCNI CTCAG 2 cut(s) 46, 372
BspFNI CGCG 2 cut(s) 141, 177
BspLI GGNNCC 1 cut(s) 277
BspPI GGATC 3 cut(s) 139, 254, 449
BspT104I TTCGAA 1 cut(s) 489
BsrDI GCAATG 1 cut(s) 281
BsrI ACTGG 1 cut(s) 124
BssECI CCNNGG 3 cut(s) 102, 208, 372
BssMI GATC 6 cut(s) 144, 156, 184, 246, 301, 454
BssSI CACGAG 1 cut(s) 425
Bst2BI CACGAG 1 cut(s) 425
Bst2UI CCWGG 1 cut(s) 351
BstBI TTCGAA 1 cut(s) 489
BstDEI CTNAG 2 cut(s) 33, 380
BstDSI CCRYGG 1 cut(s) 208
BstF5I GGATG 2 cut(s) 304, 346
BstFNI CGCG 2 cut(s) 141, 177
BstKTI GATC 6 cut(s) 147, 159, 187, 249, 304, 457
BstMBI GATC 6 cut(s) 144, 156, 184, 246, 301, 454
BstMCI CGRYCG 2 cut(s) 102, 139
BstMWI GCNNNNNNNGC 2 cut(s) 508, 565
BstNI CCWGG 1 cut(s) 351
BstSCI CCNGG 2 cut(s) 349, 457
BstUI CGCG 2 cut(s) 141, 177
BstV1I GCAGC 1 cut(s) 119
BstV2I GAAGAC 1 cut(s) 372
BstX2I RGATCY 1 cut(s) 144
BstYI RGATCY 1 cut(s) 144
BsuRI GGCC 3 cut(s) 206, 213, 333
BtgI CCRYGG 1 cut(s) 208
BtsCI GGATG 2 cut(s) 304, 346
BtsIMutI CAGTG 1 cut(s) 117
Cfr13I GGNCC 2 cut(s) 205, 356
CseI GACGC 1 cut(s) 63
CviAII CATG 5 cut(s) 94, 236, 338, 497, 569
DdeI CTNAG 2 cut(s) 33, 380
DpnI GATC 6 cut(s) 146, 158, 186, 248, 303, 456
DpnII GATC 6 cut(s) 144, 156, 184, 246, 301, 454
EaeI YGGCCR 2 cut(s) 211, 331
Eco47I GGWCC 1 cut(s) 356
Eco88I CYCGRG 1 cut(s) 371
EcoO109I RGGNCCY 1 cut(s) 356
EcoRII CCWGG 1 cut(s) 349
FaeI CATG 5 cut(s) 97, 239, 341, 500, 572
FaiI YATR 8 cut(s) 95, 237, 339, 388, 390, 498, 504, 570
FatI CATG 5 cut(s) 93, 235, 337, 496, 568
FauNDI CATATG 1 cut(s) 388
FbaI TGATCA 2 cut(s) 156, 301
FblI GTMKAC 1 cut(s) 98
Fnu4HI GCNGC 2 cut(s) 108, 331
FokI GGATG 2 cut(s) 311, 333
Fsp4HI GCNGC 2 cut(s) 108, 331
GluI GCNGC 2 cut(s) 108, 331
HaeIII GGCC 3 cut(s) 206, 213, 333
HapII CCGG 5 cut(s) 198, 261, 273, 458, 512
HgaI GACGC 1 cut(s) 63
Hin1II CATG 5 cut(s) 97, 239, 341, 500, 572
HincII GTYRAC 1 cut(s) 99
HindII GTYRAC 1 cut(s) 99
HpaII CCGG 5 cut(s) 198, 261, 273, 458, 512
HphI GGTGA 3 cut(s) 49, 160, 244
Hpy166II GTNNAC 3 cut(s) 99, 323, 394
Hpy188I TCNGA 1 cut(s) 36
Hpy188III TCNNGA 5 cut(s) 308, 359, 427, 470, 563
Hpy8I GTNNAC 3 cut(s) 99, 323, 394
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 3 cut(s) 36, 514, 523
HpyCH4IV ACGT 1 cut(s) 325
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 508, 565
HpyF3I CTNAG 2 cut(s) 33, 380
HpySE526I ACGT 1 cut(s) 325
Hsp92II CATG 5 cut(s) 97, 239, 341, 500, 572
Ksp22I TGATCA 2 cut(s) 156, 301
Kzo9I GATC 6 cut(s) 144, 156, 184, 246, 301, 454
LmnI GCTCC 3 cut(s) 275, 288, 565
Lsp1109I GCAGC 1 cut(s) 119
LweI GCATC 1 cut(s) 568
MaeII ACGT 1 cut(s) 325
MaeIII GTNAC 1 cut(s) 178
MalI GATC 6 cut(s) 146, 158, 186, 248, 303, 456
MboI GATC 6 cut(s) 144, 156, 184, 246, 301, 454
MboII GAAGA 4 cut(s) 179, 377, 529, 550
MflI RGATCY 1 cut(s) 144
MhlI GDGCHC 2 cut(s) 41, 386
MmeI TCCRAC 1 cut(s) 276
MnlI CCTC 9 cut(s) 28, 71, 88, 97, 214, 220, 237, 347, 367
MslI CAYNNNNRTG 1 cut(s) 389
MspI CCGG 5 cut(s) 198, 261, 273, 458, 512
MspR9I CCNGG 2 cut(s) 351, 459
MvaI CCWGG 1 cut(s) 351
MvnI CGCG 2 cut(s) 141, 177
MwoI GCNNNNNNNGC 2 cut(s) 508, 565
NciI CCSGG 1 cut(s) 459
NdeI CATATG 1 cut(s) 388
NdeII GATC 6 cut(s) 144, 156, 184, 246, 301, 454
NlaIII CATG 5 cut(s) 97, 239, 341, 500, 572
NlaIV GGNNCC 1 cut(s) 277
NmeAIII GCCGAG 1 cut(s) 182
NmuCI GTSAC 1 cut(s) 178
NspV TTCGAA 1 cut(s) 489
OliI CACNNNNGTG 1 cut(s) 389
PcsI WCGNNNNNNNCGW 2 cut(s) 216, 222
PfoI TCCNGGA 1 cut(s) 349
PkrI GCNGC 2 cut(s) 109, 332
PpuMI RGGWCCY 1 cut(s) 356
Psp5II RGGWCCY 1 cut(s) 356
Psp6I CCWGG 1 cut(s) 349
PspGI CCWGG 1 cut(s) 349
PspN4I GGNNCC 1 cut(s) 277
PspPI GGNCC 2 cut(s) 205, 356
PspPPI RGGWCCY 1 cut(s) 356
PsuI RGATCY 1 cut(s) 144
RseI CAYNNNNRTG 1 cut(s) 389
SalI GTCGAC 1 cut(s) 97
SatI GCNGC 2 cut(s) 108, 331
Sau3AI GATC 6 cut(s) 144, 156, 184, 246, 301, 454
Sau96I GGNCC 2 cut(s) 205, 356
ScrFI CCNGG 2 cut(s) 351, 459
SduI GDGCHC 2 cut(s) 41, 386
SetI ASST 5 cut(s) 20, 28, 328, 358, 443
SfaNI GCATC 1 cut(s) 568
SfuI TTCGAA 1 cut(s) 489
SinI GGWCC 1 cut(s) 356
SmiMI CAYNNNNRTG 1 cut(s) 389
SsiI CCGC 4 cut(s) 139, 175, 286, 330
StyD4I CCNGG 2 cut(s) 349, 457
TaiI ACGT 1 cut(s) 328
TaqI TCGA 4 cut(s) 98, 135, 471, 489
TaqII GACCGA 2 cut(s) 116, 197
TauI GCSGC 1 cut(s) 333
TscAI CASTG 1 cut(s) 124
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 1 cut(s) 107
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 3 cut(s) 335, 378, 455
TspGWI ACGGA 1 cut(s) 137
TspRI CASTG 1 cut(s) 124
VpaK11BI GGWCC 1 cut(s) 356
XmiI GTMKAC 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.