Divergent CCT motif
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g11290 |
| malus_domestica | MD15G1434400.v1.1 |
| prunus_persica | Prupe.1G578500_v2.0.a1 Prupe.1G578500_v2.0.a1 |
| pyrus_communis | pycom15g38350 |
| rosa_laevigata | RLG00000004834 |
| rosa_roxburghii | Rroxscaffold_3G00268040 |
| rosa_rugosa | Rorug06G0475200 |
| rosa_samantha | Rh7AG065900 Rh7BG081800 Rh7CG081900 Rh7DG082900 |
| rosa_wichuraiana | Rw7G006890 Rw7G007110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 174 |
| AclI | AACGTT | 1 cut(s) | 361 |
| AcsI | RAATTY | 1 cut(s) | 207 |
| AgsI | TTSAA | 1 cut(s) | 371 |
| AluBI | AGCT | 3 cut(s) | 221, 231, 548 |
| AluI | AGCT | 3 cut(s) | 221, 231, 548 |
| Alw21I | GWGCWC | 1 cut(s) | 233 |
| Alw26I | GTCTC | 1 cut(s) | 481 |
| ApoI | RAATTY | 1 cut(s) | 207 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 349 |
| AspLEI | GCGC | 1 cut(s) | 378 |
| AsuHPI | GGTGA | 4 cut(s) | 110, 236, 393, 498 |
| BanII | GRGCYC | 1 cut(s) | 233 |
| Bbv12I | GWGCWC | 1 cut(s) | 233 |
| BccI | CCATC | 5 cut(s) | 5, 61, 124, 152, 292 |
| BciVI | GTATCC | 1 cut(s) | 324 |
| BcoDI | GTCTC | 1 cut(s) | 481 |
| BfaI | CTAG | 2 cut(s) | 62, 218 |
| BfuI | GTATCC | 1 cut(s) | 324 |
| BpuEI | CTTGAG | 2 cut(s) | 186, 524 |
| BsaJI | CCNNGG | 1 cut(s) | 29 |
| Bse1I | ACTGG | 1 cut(s) | 245 |
| BseDI | CCNNGG | 1 cut(s) | 29 |
| BseGI | GGATG | 1 cut(s) | 284 |
| BseMII | CTCAG | 1 cut(s) | 55 |
| BseNI | ACTGG | 1 cut(s) | 245 |
| BseRI | GAGGAG | 2 cut(s) | 446, 449 |
| BsiHKAI | GWGCWC | 1 cut(s) | 233 |
| BslFI | GGGAC | 1 cut(s) | 395 |
| BsmAI | GTCTC | 1 cut(s) | 481 |
| BsmFI | GGGAC | 1 cut(s) | 395 |
| Bsp1286I | GDGCHC | 1 cut(s) | 233 |
| Bsp143I | GATC | 3 cut(s) | 89, 398, 499 |
| BspCNI | CTCAG | 1 cut(s) | 54 |
| BsrI | ACTGG | 1 cut(s) | 245 |
| BssECI | CCNNGG | 1 cut(s) | 29 |
| BssMI | GATC | 3 cut(s) | 89, 398, 499 |
| Bst4CI | ACNGT | 1 cut(s) | 522 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 73 |
| BstDEI | CTNAG | 1 cut(s) | 41 |
| BstF5I | GGATG | 1 cut(s) | 284 |
| BstHHI | GCGC | 1 cut(s) | 378 |
| BstKTI | GATC | 3 cut(s) | 92, 401, 502 |
| BstMAI | GTCTC | 1 cut(s) | 481 |
| BstMBI | GATC | 3 cut(s) | 89, 398, 499 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 58, 73, 260 |
| BsuI | GTATCC | 1 cut(s) | 324 |
| BtsCI | GGATG | 1 cut(s) | 284 |
| BtsIMutI | CAGTG | 2 cut(s) | 236, 252 |
| CfoI | GCGC | 1 cut(s) | 378 |
| CseI | GACGC | 1 cut(s) | 203 |
| CviJI | RGCY | 7 cut(s) | 200, 221, 231, 268, 528, 548, 558 |
| CviKI_1 | RGCY | 7 cut(s) | 200, 221, 231, 268, 528, 548, 558 |
| DdeI | CTNAG | 1 cut(s) | 41 |
| DpnI | GATC | 3 cut(s) | 91, 400, 501 |
| DpnII | GATC | 3 cut(s) | 89, 398, 499 |
| Ecl136II | GAGCTC | 1 cut(s) | 231 |
| Eco24I | GRGCYC | 1 cut(s) | 233 |
| Eco53kI | GAGCTC | 1 cut(s) | 231 |
| EcoICRI | GAGCTC | 1 cut(s) | 231 |
| EcoT38I | GRGCYC | 1 cut(s) | 233 |
| FaiI | YATR | 1 cut(s) | 408 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 60, 92 |
| FaqI | GGGAC | 1 cut(s) | 395 |
| FblI | GTMKAC | 1 cut(s) | 174 |
| FokI | GGATG | 1 cut(s) | 271 |
| FriOI | GRGCYC | 1 cut(s) | 233 |
| FspBI | CTAG | 2 cut(s) | 62, 218 |
| GlaI | GCGC | 1 cut(s) | 377 |
| HgaI | GACGC | 1 cut(s) | 203 |
| HhaI | GCGC | 1 cut(s) | 378 |
| Hin6I | GCGC | 1 cut(s) | 376 |
| HinP1I | GCGC | 1 cut(s) | 376 |
| HinfI | GANTC | 1 cut(s) | 467 |
| HphI | GGTGA | 4 cut(s) | 110, 236, 393, 498 |
| Hpy166II | GTNNAC | 1 cut(s) | 175 |
| Hpy188I | TCNGA | 4 cut(s) | 33, 44, 298, 486 |
| Hpy188III | TCNNGA | 3 cut(s) | 203, 368, 497 |
| Hpy8I | GTNNAC | 1 cut(s) | 175 |
| Hpy99I | CGWCG | 1 cut(s) | 136 |
| HpyAV | CCTTC | 2 cut(s) | 422, 457 |
| HpyCH4III | ACNGT | 1 cut(s) | 522 |
| HpyCH4IV | ACGT | 1 cut(s) | 361 |
| HpyCH4V | TGCA | 2 cut(s) | 254, 358 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 58, 73, 260 |
| HpyF3I | CTNAG | 1 cut(s) | 41 |
| HpySE526I | ACGT | 1 cut(s) | 361 |
| HspAI | GCGC | 1 cut(s) | 376 |
| Kzo9I | GATC | 3 cut(s) | 89, 398, 499 |
| LpnPI | CCDG | 9 cut(s) | 201, 207, 258, 282, 312, 364, 370, 413, 510 |
| MaeI | CTAG | 2 cut(s) | 62, 218 |
| MaeII | ACGT | 1 cut(s) | 361 |
| MaeIII | GTNAC | 1 cut(s) | 300 |
| MalI | GATC | 3 cut(s) | 91, 400, 501 |
| MboI | GATC | 3 cut(s) | 89, 398, 499 |
| MboII | GAAGA | 3 cut(s) | 145, 357, 488 |
| MhlI | GDGCHC | 1 cut(s) | 233 |
| MluCI | AATT | 1 cut(s) | 207 |
| MlyI | GAGTC | 1 cut(s) | 476 |
| MmeI | TCCRAC | 1 cut(s) | 312 |
| MnlI | CCTC | 5 cut(s) | 39, 424, 427, 436, 526 |
| MroXI | GAANNNNTTC | 1 cut(s) | 349 |
| MseI | TTAA | 1 cut(s) | 320 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 58, 73, 260 |
| NdeII | GATC | 3 cut(s) | 89, 398, 499 |
| PdmI | GAANNNNTTC | 1 cut(s) | 349 |
| PflFI | GACNNNGTC | 1 cut(s) | 386 |
| PleI | GAGTC | 1 cut(s) | 475 |
| PpsI | GAGTC | 1 cut(s) | 475 |
| Psp124BI | GAGCTC | 1 cut(s) | 233 |
| Psp1406I | AACGTT | 1 cut(s) | 361 |
| PsyI | GACNNNGTC | 1 cut(s) | 386 |
| SacI | GAGCTC | 1 cut(s) | 233 |
| SaqAI | TTAA | 1 cut(s) | 320 |
| Sau3AI | GATC | 3 cut(s) | 89, 398, 499 |
| SchI | GAGTC | 1 cut(s) | 476 |
| SduI | GDGCHC | 1 cut(s) | 233 |
| SetI | ASST | 7 cut(s) | 223, 233, 337, 364, 406, 511, 550 |
| SmlI | CTYRAG | 2 cut(s) | 201, 539 |
| SmoI | CTYRAG | 2 cut(s) | 201, 539 |
| Sse9I | AATT | 1 cut(s) | 207 |
| SspI | AATATT | 1 cut(s) | 150 |
| SspMI | CTAG | 2 cut(s) | 62, 218 |
| SstI | GAGCTC | 1 cut(s) | 233 |
| TaaI | ACNGT | 1 cut(s) | 522 |
| TaiI | ACGT | 1 cut(s) | 364 |
| TaqI | TCGA | 1 cut(s) | 156 |
| TasI | AATT | 1 cut(s) | 207 |
| Tru1I | TTAA | 1 cut(s) | 320 |
| Tru9I | TTAA | 1 cut(s) | 320 |
| TscAI | CASTG | 2 cut(s) | 243, 252 |
| TspDTI | ATGAA | 1 cut(s) | 489 |
| TspRI | CASTG | 2 cut(s) | 243, 252 |
| Tth111I | GACNNNGTC | 1 cut(s) | 386 |
| XapI | RAATTY | 1 cut(s) | 207 |
| XmiI | GTMKAC | 1 cut(s) | 174 |
| XmnI | GAANNNNTTC | 1 cut(s) | 349 |
| XspI | CTAG | 2 cut(s) | 62, 218 |