Divergent CCT motif
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g11290 |
| malus_domestica | MD15G1434400.v1.1 |
| prunus_persica | Prupe.1G578500_v2.0.a1 Prupe.1G578500_v2.0.a1 |
| pyrus_communis | pycom15g38350 |
| rosa_laevigata | RLG00000004834 |
| rosa_roxburghii | Rroxscaffold_3G00268040 |
| rosa_rugosa | Rorug06G0475200 |
| rosa_samantha | Rh7AG065900 Rh7BG081800 Rh7CG081900 Rh7DG082900 |
| rosa_wichuraiana | Rw7G006890 Rw7G007110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 23 |
| AatII | GACGTC | 1 cut(s) | 344 |
| AccI | GTMKAC | 1 cut(s) | 372 |
| AcyI | GRCGYC | 1 cut(s) | 341 |
| AflII | CTTAAG | 1 cut(s) | 112 |
| AgsI | TTSAA | 4 cut(s) | 80, 160, 367, 569 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 340 |
| AluBI | AGCT | 4 cut(s) | 111, 295, 419, 429 |
| AluI | AGCT | 4 cut(s) | 111, 295, 419, 429 |
| Alw26I | GTCTC | 1 cut(s) | 270 |
| AoxI | GGCC | 1 cut(s) | 458 |
| ApeKI | GCWGC | 1 cut(s) | 9 |
| AseI | ATTAAT | 1 cut(s) | 219 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 248 |
| AsuHPI | GGTGA | 2 cut(s) | 320, 434 |
| BbvI | GCAGC | 1 cut(s) | 21 |
| BccI | CCATC | 2 cut(s) | 334, 490 |
| BcoDI | GTCTC | 1 cut(s) | 270 |
| BfaI | CTAG | 3 cut(s) | 86, 272, 416 |
| BfmI | CTRYAG | 1 cut(s) | 387 |
| BfrI | CTTAAG | 1 cut(s) | 112 |
| BisI | GCNGC | 1 cut(s) | 10 |
| BlsI | GCNGC | 1 cut(s) | 11 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 340 |
| BmsI | GCATC | 2 cut(s) | 46, 187 |
| BoxI | GACNNNNGTC | 1 cut(s) | 262 |
| BpuEI | CTTGAG | 1 cut(s) | 384 |
| BsaHI | GRCGYC | 1 cut(s) | 341 |
| BsaJI | CCNNGG | 1 cut(s) | 239 |
| Bse3DI | GCAATG | 1 cut(s) | 563 |
| BseDI | CCNNGG | 1 cut(s) | 239 |
| BseGI | GGATG | 1 cut(s) | 202 |
| BseMI | GCAATG | 1 cut(s) | 563 |
| BseMII | CTCAG | 1 cut(s) | 132 |
| BseXI | GCAGC | 1 cut(s) | 21 |
| Bsh1285I | CGRYCG | 1 cut(s) | 506 |
| BshFI | GGCC | 1 cut(s) | 460 |
| BsiEI | CGRYCG | 1 cut(s) | 506 |
| BsmAI | GTCTC | 1 cut(s) | 270 |
| BsmBI | CGTCTC | 1 cut(s) | 270 |
| BsnI | GGCC | 1 cut(s) | 460 |
| Bsp143I | GATC | 2 cut(s) | 116, 503 |
| BspANI | GGCC | 1 cut(s) | 460 |
| BspCNI | CTCAG | 1 cut(s) | 133 |
| BspTI | CTTAAG | 1 cut(s) | 112 |
| BsrDI | GCAATG | 1 cut(s) | 563 |
| BssECI | CCNNGG | 1 cut(s) | 239 |
| BssMI | GATC | 2 cut(s) | 116, 503 |
| BssNI | GRCGYC | 1 cut(s) | 341 |
| BssT1I | CCWWGG | 1 cut(s) | 239 |
| Bst4CI | ACNGT | 1 cut(s) | 134 |
| BstACI | GRCGYC | 1 cut(s) | 341 |
| BstAFI | CTTAAG | 1 cut(s) | 112 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 283 |
| BstDEI | CTNAG | 1 cut(s) | 141 |
| BstF5I | GGATG | 1 cut(s) | 202 |
| BstKTI | GATC | 2 cut(s) | 119, 506 |
| BstMAI | GTCTC | 1 cut(s) | 270 |
| BstMBI | GATC | 2 cut(s) | 116, 503 |
| BstMCI | CGRYCG | 1 cut(s) | 506 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 283, 292 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 262 |
| BstSFI | CTRYAG | 1 cut(s) | 387 |
| BstV1I | GCAGC | 1 cut(s) | 21 |
| BsuRI | GGCC | 1 cut(s) | 460 |
| BtsCI | GGATG | 1 cut(s) | 202 |
| BtsI | GCAGTG | 1 cut(s) | 12 |
| BtsIMutI | CAGTG | 1 cut(s) | 12 |
| CseI | GACGC | 1 cut(s) | 401 |
| CviAII | CATG | 2 cut(s) | 193, 303 |
| CviJI | RGCY | 8 cut(s) | 111, 295, 398, 419, 429, 460, 466, 509 |
| CviKI_1 | RGCY | 8 cut(s) | 111, 295, 398, 419, 429, 460, 466, 509 |
| DdeI | CTNAG | 1 cut(s) | 141 |
| DpnI | GATC | 2 cut(s) | 118, 505 |
| DpnII | GATC | 2 cut(s) | 116, 503 |
| DriI | GACNNNNNGTC | 1 cut(s) | 340 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 340 |
| Eco130I | CCWWGG | 1 cut(s) | 239 |
| EcoT14I | CCWWGG | 1 cut(s) | 239 |
| ErhI | CCWWGG | 1 cut(s) | 239 |
| Esp3I | CGTCTC | 1 cut(s) | 270 |
| FaeI | CATG | 2 cut(s) | 196, 306 |
| FaiI | YATR | 8 cut(s) | 23, 32, 45, 137, 194, 304, 410, 536 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 270, 302 |
| FatI | CATG | 2 cut(s) | 192, 302 |
| FblI | GTMKAC | 1 cut(s) | 372 |
| Fnu4HI | GCNGC | 1 cut(s) | 10 |
| FokI | GGATG | 1 cut(s) | 209 |
| Fsp4HI | GCNGC | 1 cut(s) | 10 |
| FspBI | CTAG | 3 cut(s) | 86, 272, 416 |
| GluI | GCNGC | 1 cut(s) | 10 |
| HaeIII | GGCC | 1 cut(s) | 460 |
| HgaI | GACGC | 1 cut(s) | 401 |
| Hin1I | GRCGYC | 1 cut(s) | 341 |
| Hin1II | CATG | 2 cut(s) | 196, 306 |
| HincII | GTYRAC | 1 cut(s) | 174 |
| HindII | GTYRAC | 1 cut(s) | 174 |
| HphI | GGTGA | 2 cut(s) | 320, 434 |
| Hpy166II | GTNNAC | 2 cut(s) | 174, 373 |
| Hpy188I | TCNGA | 2 cut(s) | 142, 254 |
| Hpy188III | TCNNGA | 2 cut(s) | 123, 566 |
| Hpy8I | GTNNAC | 2 cut(s) | 174, 373 |
| Hpy99I | CGWCG | 1 cut(s) | 258 |
| HpyCH4III | ACNGT | 1 cut(s) | 134 |
| HpyCH4IV | ACGT | 1 cut(s) | 341 |
| HpyCH4V | TGCA | 4 cut(s) | 9, 59, 452, 556 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 283, 292 |
| HpyF3I | CTNAG | 1 cut(s) | 141 |
| HpySE526I | ACGT | 1 cut(s) | 341 |
| Hsp92I | GRCGYC | 1 cut(s) | 341 |
| Hsp92II | CATG | 2 cut(s) | 196, 306 |
| Kzo9I | GATC | 2 cut(s) | 116, 503 |
| LpnPI | CCDG | 7 cut(s) | 107, 399, 405, 456, 480, 510, 568 |
| Lsp1109I | GCAGC | 1 cut(s) | 21 |
| LweI | GCATC | 2 cut(s) | 46, 187 |
| MaeI | CTAG | 3 cut(s) | 86, 272, 416 |
| MaeII | ACGT | 1 cut(s) | 341 |
| MaeIII | GTNAC | 1 cut(s) | 498 |
| MalI | GATC | 2 cut(s) | 118, 505 |
| MboI | GATC | 2 cut(s) | 116, 503 |
| MboII | GAAGA | 3 cut(s) | 148, 355, 555 |
| MluCI | AATT | 3 cut(s) | 67, 216, 227 |
| MmeI | TCCRAC | 1 cut(s) | 277 |
| MroXI | GAANNNNTTC | 1 cut(s) | 248 |
| MseI | TTAA | 3 cut(s) | 113, 219, 518 |
| MslI | CAYNNNNRTG | 1 cut(s) | 48 |
| MspCI | CTTAAG | 1 cut(s) | 112 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 283, 292 |
| NdeII | GATC | 2 cut(s) | 116, 503 |
| NlaIII | CATG | 2 cut(s) | 196, 306 |
| PdmI | GAANNNNTTC | 1 cut(s) | 248 |
| PkrI | GCNGC | 1 cut(s) | 11 |
| Ple19I | CGATCG | 1 cut(s) | 506 |
| PshAI | GACNNNNGTC | 1 cut(s) | 262 |
| PshBI | ATTAAT | 1 cut(s) | 219 |
| PsiI | TTATAA | 1 cut(s) | 23 |
| PvuI | CGATCG | 1 cut(s) | 506 |
| RseI | CAYNNNNRTG | 1 cut(s) | 48 |
| SaqAI | TTAA | 3 cut(s) | 113, 219, 518 |
| SatI | GCNGC | 1 cut(s) | 10 |
| Sau3AI | GATC | 2 cut(s) | 116, 503 |
| SetI | ASST | 8 cut(s) | 113, 297, 344, 421, 431, 445, 535, 587 |
| SfaNI | GCATC | 2 cut(s) | 46, 187 |
| SfcI | CTRYAG | 1 cut(s) | 387 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 48 |
| SmlI | CTYRAG | 2 cut(s) | 112, 399 |
| SmoI | CTYRAG | 2 cut(s) | 112, 399 |
| Sse9I | AATT | 3 cut(s) | 67, 216, 227 |
| SspI | AATATT | 1 cut(s) | 360 |
| SspMI | CTAG | 3 cut(s) | 86, 272, 416 |
| StyI | CCWWGG | 1 cut(s) | 239 |
| TaaI | ACNGT | 1 cut(s) | 134 |
| TaiI | ACGT | 1 cut(s) | 344 |
| TasI | AATT | 3 cut(s) | 67, 216, 227 |
| Tru1I | TTAA | 3 cut(s) | 113, 219, 518 |
| Tru9I | TTAA | 3 cut(s) | 113, 219, 518 |
| TscAI | CASTG | 1 cut(s) | 19 |
| TseI | GCWGC | 1 cut(s) | 9 |
| TspRI | CASTG | 1 cut(s) | 19 |
| Vha464I | CTTAAG | 1 cut(s) | 112 |
| VspI | ATTAAT | 1 cut(s) | 219 |
| XmiI | GTMKAC | 1 cut(s) | 372 |
| XmnI | GAANNNNTTC | 1 cut(s) | 248 |
| XspI | CTAG | 3 cut(s) | 86, 272, 416 |
| ZraI | GACGTC | 1 cut(s) | 342 |