Divergent CCT motif
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g11290 |
| malus_domestica | MD15G1434400.v1.1 |
| prunus_persica | Prupe.1G578500_v2.0.a1 Prupe.1G578500_v2.0.a1 |
| pyrus_communis | pycom15g38350 |
| rosa_laevigata | RLG00000004834 |
| rosa_roxburghii | Rroxscaffold_3G00268040 |
| rosa_rugosa | Rorug06G0475200 |
| rosa_samantha | Rh7AG065900 Rh7BG081800 Rh7CG081900 Rh7DG082900 |
| rosa_wichuraiana | Rw7G006890 Rw7G007110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 152 |
| AccI | GTMKAC | 1 cut(s) | 192 |
| AciI | CCGC | 1 cut(s) | 449 |
| AclWI | GGATC | 1 cut(s) | 413 |
| AcyI | GRCGYC | 1 cut(s) | 149 |
| AgsI | TTSAA | 3 cut(s) | 175, 389, 487 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 148 |
| AluBI | AGCT | 3 cut(s) | 43, 239, 249 |
| AluI | AGCT | 3 cut(s) | 43, 239, 249 |
| Alw21I | GWGCWC | 1 cut(s) | 45 |
| Alw26I | GTCTC | 2 cut(s) | 78, 496 |
| AlwI | GGATC | 1 cut(s) | 413 |
| AoxI | GGCC | 1 cut(s) | 278 |
| AseI | ATTAAT | 1 cut(s) | 27 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 56 |
| AsuHPI | GGTGA | 3 cut(s) | 128, 254, 513 |
| BanII | GRGCYC | 1 cut(s) | 45 |
| Bbv12I | GWGCWC | 1 cut(s) | 45 |
| BccI | CCATC | 2 cut(s) | 142, 310 |
| BcoDI | GTCTC | 2 cut(s) | 78, 496 |
| BfaI | CTAG | 2 cut(s) | 80, 236 |
| BfmI | CTRYAG | 1 cut(s) | 207 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 148 |
| BoxI | GACNNNNGTC | 1 cut(s) | 70 |
| BpuEI | CTTGAG | 1 cut(s) | 204 |
| BsaHI | GRCGYC | 1 cut(s) | 149 |
| BsaJI | CCNNGG | 1 cut(s) | 47 |
| Bse3DI | GCAATG | 1 cut(s) | 383 |
| BseDI | CCNNGG | 1 cut(s) | 47 |
| BseGI | GGATG | 1 cut(s) | 10 |
| BseMI | GCAATG | 1 cut(s) | 383 |
| BseRI | GAGGAG | 1 cut(s) | 467 |
| Bsh1285I | CGRYCG | 1 cut(s) | 326 |
| BshFI | GGCC | 1 cut(s) | 280 |
| BsiEI | CGRYCG | 1 cut(s) | 326 |
| BsiHKAI | GWGCWC | 1 cut(s) | 45 |
| BslFI | GGGAC | 1 cut(s) | 413 |
| BsmAI | GTCTC | 2 cut(s) | 78, 496 |
| BsmBI | CGTCTC | 1 cut(s) | 78 |
| BsmFI | GGGAC | 1 cut(s) | 413 |
| BsnI | GGCC | 1 cut(s) | 280 |
| Bsp1286I | GDGCHC | 1 cut(s) | 45 |
| Bsp143I | GATC | 2 cut(s) | 323, 405 |
| BspACI | CCGC | 1 cut(s) | 449 |
| BspANI | GGCC | 1 cut(s) | 280 |
| BspPI | GGATC | 1 cut(s) | 413 |
| BsrDI | GCAATG | 1 cut(s) | 383 |
| BssECI | CCNNGG | 1 cut(s) | 47 |
| BssMI | GATC | 2 cut(s) | 323, 405 |
| BssNI | GRCGYC | 1 cut(s) | 149 |
| BssT1I | CCWWGG | 1 cut(s) | 47 |
| BstACI | GRCGYC | 1 cut(s) | 149 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 91, 425 |
| BstC8I | GCNNGC | 1 cut(s) | 447 |
| BstF5I | GGATG | 1 cut(s) | 10 |
| BstKTI | GATC | 2 cut(s) | 326, 408 |
| BstMAI | GTCTC | 2 cut(s) | 78, 496 |
| BstMBI | GATC | 2 cut(s) | 323, 405 |
| BstMCI | CGRYCG | 1 cut(s) | 326 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 91, 425 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 70 |
| BstSFI | CTRYAG | 1 cut(s) | 207 |
| BsuRI | GGCC | 1 cut(s) | 280 |
| BtsCI | GGATG | 1 cut(s) | 10 |
| Cac8I | GCNNGC | 1 cut(s) | 447 |
| CseI | GACGC | 1 cut(s) | 221 |
| CviAII | CATG | 1 cut(s) | 111 |
| DpnI | GATC | 2 cut(s) | 325, 407 |
| DpnII | GATC | 2 cut(s) | 323, 405 |
| DriI | GACNNNNNGTC | 1 cut(s) | 148 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 148 |
| EciI | GGCGGA | 1 cut(s) | 464 |
| Ecl136II | GAGCTC | 1 cut(s) | 43 |
| Eco130I | CCWWGG | 1 cut(s) | 47 |
| Eco24I | GRGCYC | 1 cut(s) | 45 |
| Eco53kI | GAGCTC | 1 cut(s) | 43 |
| EcoICRI | GAGCTC | 1 cut(s) | 43 |
| EcoT14I | CCWWGG | 1 cut(s) | 47 |
| EcoT38I | GRGCYC | 1 cut(s) | 45 |
| ErhI | CCWWGG | 1 cut(s) | 47 |
| Esp3I | CGTCTC | 1 cut(s) | 78 |
| FaeI | CATG | 1 cut(s) | 114 |
| FaiI | YATR | 4 cut(s) | 112, 230, 356, 426 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 78, 110 |
| FaqI | GGGAC | 1 cut(s) | 413 |
| FatI | CATG | 1 cut(s) | 110 |
| FblI | GTMKAC | 1 cut(s) | 192 |
| FokI | GGATG | 1 cut(s) | 17 |
| FriOI | GRGCYC | 1 cut(s) | 45 |
| FspBI | CTAG | 2 cut(s) | 80, 236 |
| HaeIII | GGCC | 1 cut(s) | 280 |
| HgaI | GACGC | 1 cut(s) | 221 |
| Hin1I | GRCGYC | 1 cut(s) | 149 |
| Hin1II | CATG | 1 cut(s) | 114 |
| HphI | GGTGA | 3 cut(s) | 128, 254, 513 |
| Hpy166II | GTNNAC | 1 cut(s) | 193 |
| Hpy188I | TCNGA | 2 cut(s) | 62, 501 |
| Hpy188III | TCNNGA | 2 cut(s) | 386, 512 |
| Hpy8I | GTNNAC | 1 cut(s) | 193 |
| Hpy99I | CGWCG | 1 cut(s) | 66 |
| HpyAV | CCTTC | 3 cut(s) | 440, 472, 540 |
| HpyCH4IV | ACGT | 2 cut(s) | 149, 535 |
| HpyCH4V | TGCA | 1 cut(s) | 272 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 91, 425 |
| HpySE526I | ACGT | 2 cut(s) | 149, 535 |
| Hsp92I | GRCGYC | 1 cut(s) | 149 |
| Hsp92II | CATG | 1 cut(s) | 114 |
| Kzo9I | GATC | 2 cut(s) | 323, 405 |
| LmnI | GCTCC | 1 cut(s) | 48 |
| LpnPI | CCDG | 8 cut(s) | 219, 225, 276, 300, 330, 388, 431, 525 |
| MaeI | CTAG | 2 cut(s) | 80, 236 |
| MaeII | ACGT | 2 cut(s) | 149, 535 |
| MaeIII | GTNAC | 1 cut(s) | 318 |
| MalI | GATC | 2 cut(s) | 325, 407 |
| MboI | GATC | 2 cut(s) | 323, 405 |
| MboII | GAAGA | 3 cut(s) | 163, 375, 503 |
| MhlI | GDGCHC | 1 cut(s) | 45 |
| MluCI | AATT | 3 cut(s) | 24, 35, 556 |
| MmeI | TCCRAC | 1 cut(s) | 85 |
| MnlI | CCTC | 3 cut(s) | 445, 448, 457 |
| MroXI | GAANNNNTTC | 1 cut(s) | 56 |
| MseI | TTAA | 2 cut(s) | 27, 338 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 91, 425 |
| NdeII | GATC | 2 cut(s) | 323, 405 |
| NlaIII | CATG | 1 cut(s) | 114 |
| NmeAIII | GCCGAG | 1 cut(s) | 352 |
| PdmI | GAANNNNTTC | 1 cut(s) | 56 |
| Ple19I | CGATCG | 1 cut(s) | 326 |
| PshAI | GACNNNNGTC | 1 cut(s) | 70 |
| PshBI | ATTAAT | 1 cut(s) | 27 |
| Psp124BI | GAGCTC | 1 cut(s) | 45 |
| PvuI | CGATCG | 1 cut(s) | 326 |
| SacI | GAGCTC | 1 cut(s) | 45 |
| SaqAI | TTAA | 2 cut(s) | 27, 338 |
| Sau3AI | GATC | 2 cut(s) | 323, 405 |
| SduI | GDGCHC | 1 cut(s) | 45 |
| SfcI | CTRYAG | 1 cut(s) | 207 |
| SmlI | CTYRAG | 1 cut(s) | 219 |
| SmoI | CTYRAG | 1 cut(s) | 219 |
| Sse9I | AATT | 3 cut(s) | 24, 35, 556 |
| SsiI | CCGC | 1 cut(s) | 449 |
| SspI | AATATT | 1 cut(s) | 168 |
| SspMI | CTAG | 2 cut(s) | 80, 236 |
| SstI | GAGCTC | 1 cut(s) | 45 |
| StyI | CCWWGG | 1 cut(s) | 47 |
| TaiI | ACGT | 2 cut(s) | 152, 538 |
| TasI | AATT | 3 cut(s) | 24, 35, 556 |
| Tru1I | TTAA | 2 cut(s) | 27, 338 |
| Tru9I | TTAA | 2 cut(s) | 27, 338 |
| TspDTI | ATGAA | 2 cut(s) | 504, 549 |
| VspI | ATTAAT | 1 cut(s) | 27 |
| XmiI | GTMKAC | 1 cut(s) | 192 |
| XmnI | GAANNNNTTC | 1 cut(s) | 56 |
| XspI | CTAG | 2 cut(s) | 80, 236 |
| ZraI | GACGTC | 1 cut(s) | 150 |