Divergent CCT motif
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g11290 |
| malus_domestica | MD15G1434400.v1.1 |
| prunus_persica | Prupe.1G578500_v2.0.a1 Prupe.1G578500_v2.0.a1 |
| pyrus_communis | pycom15g38350 |
| rosa_laevigata | RLG00000004834 |
| rosa_roxburghii | Rroxscaffold_3G00268040 |
| rosa_rugosa | Rorug06G0475200 |
| rosa_samantha | Rh7AG065900 Rh7BG081800 Rh7CG081900 Rh7DG082900 |
| rosa_wichuraiana | Rw7G006890 Rw7G007110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 23 |
| AcsI | RAATTY | 2 cut(s) | 251, 305 |
| AcuI | CTGAAG | 2 cut(s) | 175, 387 |
| AflII | CTTAAG | 1 cut(s) | 142 |
| AgsI | TTSAA | 3 cut(s) | 98, 257, 641 |
| AjnI | CCWGG | 2 cut(s) | 328, 367 |
| AluBI | AGCT | 3 cut(s) | 141, 248, 412 |
| AluI | AGCT | 3 cut(s) | 141, 248, 412 |
| Alw26I | GTCTC | 2 cut(s) | 126, 177 |
| ApoI | RAATTY | 2 cut(s) | 251, 305 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 619 |
| AspA2I | CCTAGG | 1 cut(s) | 794 |
| AsuHPI | GGTGA | 1 cut(s) | 276 |
| AvrII | CCTAGG | 1 cut(s) | 794 |
| BbsI | GAAGAC | 1 cut(s) | 708 |
| BccI | CCATC | 1 cut(s) | 422 |
| BceAI | ACGGC | 1 cut(s) | 633 |
| BciT130I | CCWGG | 2 cut(s) | 330, 369 |
| BciVI | GTATCC | 1 cut(s) | 776 |
| BclI | TGATCA | 1 cut(s) | 385 |
| BcoDI | GTCTC | 2 cut(s) | 126, 177 |
| BfaI | CTAG | 2 cut(s) | 350, 795 |
| BfrI | CTTAAG | 1 cut(s) | 142 |
| BfuI | GTATCC | 1 cut(s) | 776 |
| BlnI | CCTAGG | 1 cut(s) | 794 |
| Bme1390I | CCNGG | 2 cut(s) | 330, 369 |
| BmrFI | CCNGG | 2 cut(s) | 330, 369 |
| BpiI | GAAGAC | 1 cut(s) | 708 |
| BpuEI | CTTGAG | 1 cut(s) | 456 |
| BsaJI | CCNNGG | 1 cut(s) | 794 |
| Bse118I | RCCGGY | 1 cut(s) | 336 |
| Bse1I | ACTGG | 1 cut(s) | 492 |
| BseBI | CCWGG | 2 cut(s) | 330, 369 |
| BseDI | CCNNGG | 1 cut(s) | 794 |
| BseGI | GGATG | 1 cut(s) | 160 |
| BseNI | ACTGG | 1 cut(s) | 492 |
| BsiSI | CCGG | 1 cut(s) | 337 |
| BsmAI | GTCTC | 2 cut(s) | 126, 177 |
| BsmI | GAATGC | 1 cut(s) | 277 |
| Bsp143I | GATC | 2 cut(s) | 146, 385 |
| BspHI | TCATGA | 1 cut(s) | 39 |
| BspTI | CTTAAG | 1 cut(s) | 142 |
| BsrFI | RCCGGY | 1 cut(s) | 336 |
| BsrI | ACTGG | 1 cut(s) | 492 |
| BssAI | RCCGGY | 1 cut(s) | 336 |
| BssECI | CCNNGG | 1 cut(s) | 794 |
| BssMI | GATC | 2 cut(s) | 146, 385 |
| BssT1I | CCWWGG | 1 cut(s) | 794 |
| Bst2UI | CCWGG | 2 cut(s) | 330, 369 |
| Bst4CI | ACNGT | 3 cut(s) | 60, 360, 721 |
| Bst6I | CTCTTC | 1 cut(s) | 153 |
| BstAFI | CTTAAG | 1 cut(s) | 142 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 361 |
| BstF5I | GGATG | 1 cut(s) | 160 |
| BstKTI | GATC | 2 cut(s) | 149, 388 |
| BstMAI | GTCTC | 2 cut(s) | 126, 177 |
| BstMBI | GATC | 2 cut(s) | 146, 385 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 346, 361, 467 |
| BstNI | CCWGG | 2 cut(s) | 330, 369 |
| BstSCI | CCNGG | 2 cut(s) | 328, 367 |
| BstV2I | GAAGAC | 1 cut(s) | 708 |
| BsuI | GTATCC | 1 cut(s) | 776 |
| BtgZI | GCGATG | 1 cut(s) | 391 |
| BtsCI | GGATG | 1 cut(s) | 160 |
| BtsI | GCAGTG | 1 cut(s) | 635 |
| BtsIMutI | CAGTG | 2 cut(s) | 499, 635 |
| CciI | TCATGA | 1 cut(s) | 39 |
| Cfr10I | RCCGGY | 1 cut(s) | 336 |
| CseI | GACGC | 1 cut(s) | 473 |
| CviAII | CATG | 2 cut(s) | 40, 241 |
| CviJI | RGCY | 8 cut(s) | 5, 141, 230, 248, 340, 412, 470, 813 |
| CviKI_1 | RGCY | 8 cut(s) | 5, 141, 230, 248, 340, 412, 470, 813 |
| DpnI | GATC | 2 cut(s) | 148, 387 |
| DpnII | GATC | 2 cut(s) | 146, 385 |
| DraI | TTTAAA | 1 cut(s) | 535 |
| Eam1104I | CTCTTC | 1 cut(s) | 153 |
| EarI | CTCTTC | 1 cut(s) | 153 |
| Eco130I | CCWWGG | 1 cut(s) | 794 |
| Eco57I | CTGAAG | 2 cut(s) | 175, 387 |
| EcoRII | CCWGG | 2 cut(s) | 328, 367 |
| EcoT14I | CCWWGG | 1 cut(s) | 794 |
| ErhI | CCWWGG | 1 cut(s) | 794 |
| FaeI | CATG | 2 cut(s) | 43, 244 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 20, 52 |
| FatI | CATG | 2 cut(s) | 39, 240 |
| FauNDI | CATATG | 1 cut(s) | 168 |
| FbaI | TGATCA | 1 cut(s) | 385 |
| FokI | GGATG | 1 cut(s) | 167 |
| FspBI | CTAG | 2 cut(s) | 350, 795 |
| HapII | CCGG | 1 cut(s) | 337 |
| HgaI | GACGC | 1 cut(s) | 473 |
| Hin1II | CATG | 2 cut(s) | 43, 244 |
| HinfI | GANTC | 3 cut(s) | 163, 257, 731 |
| HpaII | CCGG | 1 cut(s) | 337 |
| HphI | GGTGA | 1 cut(s) | 276 |
| Hpy166II | GTNNAC | 1 cut(s) | 724 |
| Hpy188I | TCNGA | 3 cut(s) | 194, 262, 406 |
| Hpy188III | TCNNGA | 2 cut(s) | 40, 638 |
| Hpy8I | GTNNAC | 1 cut(s) | 724 |
| HpyAV | CCTTC | 2 cut(s) | 692, 780 |
| HpyCH4III | ACNGT | 3 cut(s) | 60, 360, 721 |
| HpyCH4IV | ACGT | 2 cut(s) | 225, 775 |
| HpyCH4V | TGCA | 2 cut(s) | 524, 628 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 346, 361, 467 |
| HpySE526I | ACGT | 2 cut(s) | 225, 775 |
| Hsp92II | CATG | 2 cut(s) | 43, 244 |
| Ksp22I | TGATCA | 1 cut(s) | 385 |
| Kzo9I | GATC | 2 cut(s) | 146, 385 |
| MaeI | CTAG | 2 cut(s) | 350, 795 |
| MaeII | ACGT | 2 cut(s) | 225, 775 |
| MaeIII | GTNAC | 1 cut(s) | 650 |
| MalI | GATC | 2 cut(s) | 148, 387 |
| MboI | GATC | 2 cut(s) | 146, 385 |
| MboII | GAAGA | 7 cut(s) | 28, 80, 170, 181, 194, 627, 713 |
| MluCI | AATT | 7 cut(s) | 18, 251, 264, 305, 322, 667, 706 |
| MlyI | GAGTC | 1 cut(s) | 740 |
| MmeI | TCCRAC | 1 cut(s) | 417 |
| MnlI | CCTC | 4 cut(s) | 297, 525, 567, 706 |
| MroXI | GAANNNNTTC | 1 cut(s) | 619 |
| MseI | TTAA | 3 cut(s) | 143, 534, 804 |
| MspCI | CTTAAG | 1 cut(s) | 142 |
| MspI | CCGG | 1 cut(s) | 337 |
| MspR9I | CCNGG | 2 cut(s) | 330, 369 |
| Mva1269I | GAATGC | 1 cut(s) | 277 |
| MvaI | CCWGG | 2 cut(s) | 330, 369 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 346, 361, 467 |
| NdeI | CATATG | 1 cut(s) | 168 |
| NdeII | GATC | 2 cut(s) | 146, 385 |
| NlaIII | CATG | 2 cut(s) | 43, 244 |
| NmuCI | GTSAC | 1 cut(s) | 650 |
| PagI | TCATGA | 1 cut(s) | 39 |
| PctI | GAATGC | 1 cut(s) | 277 |
| PdmI | GAANNNNTTC | 1 cut(s) | 619 |
| PfeI | GAWTC | 2 cut(s) | 163, 257 |
| PfoI | TCCNGGA | 2 cut(s) | 328, 367 |
| PleI | GAGTC | 1 cut(s) | 739 |
| PpsI | GAGTC | 1 cut(s) | 739 |
| PsiI | TTATAA | 1 cut(s) | 23 |
| Psp6I | CCWGG | 2 cut(s) | 328, 367 |
| PspGI | CCWGG | 2 cut(s) | 328, 367 |
| SaqAI | TTAA | 3 cut(s) | 143, 534, 804 |
| Sau3AI | GATC | 2 cut(s) | 146, 385 |
| SchI | GAGTC | 1 cut(s) | 740 |
| ScrFI | CCNGG | 2 cut(s) | 330, 369 |
| SetI | ASST | 9 cut(s) | 143, 228, 250, 289, 304, 414, 517, 778, 800 |
| SmlI | CTYRAG | 2 cut(s) | 142, 471 |
| SmoI | CTYRAG | 2 cut(s) | 142, 471 |
| Sse9I | AATT | 7 cut(s) | 18, 251, 264, 305, 322, 667, 706 |
| SspI | AATATT | 2 cut(s) | 420, 454 |
| SspMI | CTAG | 2 cut(s) | 350, 795 |
| StyD4I | CCNGG | 2 cut(s) | 328, 367 |
| StyI | CCWWGG | 1 cut(s) | 794 |
| TaaI | ACNGT | 3 cut(s) | 60, 360, 721 |
| TaiI | ACGT | 2 cut(s) | 228, 778 |
| TaqI | TCGA | 1 cut(s) | 734 |
| TaqII | GACCGA | 1 cut(s) | 496 |
| TasI | AATT | 7 cut(s) | 18, 251, 264, 305, 322, 667, 706 |
| TfiI | GAWTC | 2 cut(s) | 163, 257 |
| Tru1I | TTAA | 3 cut(s) | 143, 534, 804 |
| Tru9I | TTAA | 3 cut(s) | 143, 534, 804 |
| TscAI | CASTG | 2 cut(s) | 499, 635 |
| TseFI | GTSAC | 1 cut(s) | 650 |
| Tsp45I | GTSAC | 1 cut(s) | 650 |
| TspDTI | ATGAA | 6 cut(s) | 28, 56, 171, 270, 674, 753 |
| TspRI | CASTG | 2 cut(s) | 499, 635 |
| Vha464I | CTTAAG | 1 cut(s) | 142 |
| XapI | RAATTY | 2 cut(s) | 251, 305 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 59 |
| XmaJI | CCTAGG | 1 cut(s) | 794 |
| XmnI | GAANNNNTTC | 1 cut(s) | 619 |
| XspI | CTAG | 2 cut(s) | 350, 795 |