Rroxscaffold_3G00268040

Divergent CCT motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0016844
Physical Location & Seq
Forward (+)
61202426 .. 61203857
1432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00268040.1

Sequence Viewer

Length: 522 bp
ATGGATGCTAAAATAAATGTGGGAATTAATCGCAAATTAGAGTTCCCTTGGAATAACTTCCGGCGACCCCCGTCTCTGCTAGAGCAAGTGTTGCTTCCACAACTACAATCATGTGGTGAAGTAGAAGCAACTACATCAAACGATAAGACGTCAAAACAACTCACAATATTCTTCAATGGGGTTATCAATGTCTACGACAACATTCCTGTAGATAAGGCTCAAGCGATTATGCGTCTAGCTGGTGAAAGCTCATTACTGAAACCTGTGGTTACAGAAAGGCCAAAGCCAGATGTGAGAAAACCATCTAACAAATCAAAGTTACGATCGGCTTCCAAGTTAAGAGCAGGATCATCAGCAAATCGATCACCTTACGCCCTTCCAAGAGAGAAGCAGGCGGAGGAGGATAATGAGGCTGACAAGGGGAAGGGATTGAATGAAGAAAATCGAAGACTGCTTCCTGACCTTTCACCTTTCCCTTCACGTTTAGGCTACTTTTCTCTCAATTCATCTCATCAAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
CCT_2 tify

Protein Analysis

173

Amino Acids

19.32

Weight (kDa)

9.64

Isoelectric Point (pI)

59.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tify PF06200 50 - 81 8.8e-15 tify domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016844)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11290
malus_domestica MD15G1434400.v1.1
prunus_persica Prupe.1G578500_v2.0.a1 Prupe.1G578500_v2.0.a1
pyrus_communis pycom15g38350
rosa_laevigata RLG00000004834
rosa_roxburghii Rroxscaffold_3G00268040
rosa_rugosa Rorug06G0475200
rosa_samantha Rh7AG065900 Rh7BG081800 Rh7CG081900 Rh7DG082900
rosa_wichuraiana Rw7G006890 Rw7G007110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 152
AccI GTMKAC 1 cut(s) 192
AciI CCGC 1 cut(s) 395
AclWI GGATC 1 cut(s) 355
AcyI GRCGYC 1 cut(s) 149
AgsI TTSAA 2 cut(s) 175, 433
AluBI AGCT 2 cut(s) 239, 249
AluI AGCT 2 cut(s) 239, 249
Alw26I GTCTC 1 cut(s) 78
AlwI GGATC 1 cut(s) 355
AoxI GGCC 1 cut(s) 278
AseI ATTAAT 1 cut(s) 27
Asp700I GAANNNNTTC 1 cut(s) 56
AsuHPI GGTGA 4 cut(s) 128, 254, 357, 459
BbsI GAAGAC 1 cut(s) 454
BccI CCATC 1 cut(s) 310
BcoDI GTCTC 1 cut(s) 78
BfaI CTAG 2 cut(s) 80, 236
BfmI CTRYAG 1 cut(s) 207
BoxI GACNNNNGTC 1 cut(s) 70
BpiI GAAGAC 1 cut(s) 454
BpuEI CTTGAG 1 cut(s) 204
Bsa29I ATCGAT 1 cut(s) 361
BsaHI GRCGYC 1 cut(s) 149
BsaJI CCNNGG 1 cut(s) 47
BseCI ATCGAT 1 cut(s) 361
BseDI CCNNGG 1 cut(s) 47
BseGI GGATG 1 cut(s) 10
BseRI GAGGAG 1 cut(s) 413
Bsh1285I CGRYCG 1 cut(s) 326
BshFI GGCC 1 cut(s) 280
BshVI ATCGAT 1 cut(s) 361
BsiEI CGRYCG 1 cut(s) 326
BsiSI CCGG 1 cut(s) 61
BsmAI GTCTC 1 cut(s) 78
BsmBI CGTCTC 1 cut(s) 78
BsnI GGCC 1 cut(s) 280
Bsp143I GATC 3 cut(s) 323, 347, 362
BspACI CCGC 1 cut(s) 395
BspANI GGCC 1 cut(s) 280
BspDI ATCGAT 1 cut(s) 361
BspPI GGATC 1 cut(s) 355
BssECI CCNNGG 1 cut(s) 47
BssMI GATC 3 cut(s) 323, 347, 362
BssNI GRCGYC 1 cut(s) 149
BssT1I CCWWGG 1 cut(s) 47
BstACI GRCGYC 1 cut(s) 149
BstAPI GCANNNNNTGC 1 cut(s) 91
BstC8I GCNNGC 1 cut(s) 393
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 3 cut(s) 326, 350, 365
BstMAI GTCTC 1 cut(s) 78
BstMBI GATC 3 cut(s) 323, 347, 362
BstMCI CGRYCG 1 cut(s) 326
BstMWI GCNNNNNNNGC 1 cut(s) 91
BstPAI GACNNNNGTC 1 cut(s) 70
BstSFI CTRYAG 1 cut(s) 207
BstV2I GAAGAC 1 cut(s) 454
Bsu15I ATCGAT 1 cut(s) 361
BsuRI GGCC 1 cut(s) 280
BsuTUI ATCGAT 1 cut(s) 361
BtsCI GGATG 1 cut(s) 10
Cac8I GCNNGC 1 cut(s) 393
ClaI ATCGAT 1 cut(s) 361
CseI GACGC 1 cut(s) 221
CviAII CATG 1 cut(s) 111
CviJI RGCY 9 cut(s) 218, 239, 249, 280, 286, 329, 413, 489, 519
CviKI_1 RGCY 9 cut(s) 218, 239, 249, 280, 286, 329, 413, 489, 519
DpnI GATC 3 cut(s) 325, 349, 364
DpnII GATC 3 cut(s) 323, 347, 362
EciI GGCGGA 1 cut(s) 410
Eco130I CCWWGG 1 cut(s) 47
EcoT14I CCWWGG 1 cut(s) 47
ErhI CCWWGG 1 cut(s) 47
Esp3I CGTCTC 1 cut(s) 78
FaeI CATG 1 cut(s) 114
FaiI YATR 2 cut(s) 112, 230
FalI AAGNNNNNCTT 2 cut(s) 78, 110
FatI CATG 1 cut(s) 110
FblI GTMKAC 1 cut(s) 192
FokI GGATG 1 cut(s) 17
FspBI CTAG 2 cut(s) 80, 236
HaeIII GGCC 1 cut(s) 280
HapII CCGG 1 cut(s) 61
HgaI GACGC 1 cut(s) 221
Hin1I GRCGYC 1 cut(s) 149
Hin1II CATG 1 cut(s) 114
HpaII CCGG 1 cut(s) 61
HphI GGTGA 4 cut(s) 128, 254, 357, 459
Hpy166II GTNNAC 1 cut(s) 193
Hpy188III TCNNGA 1 cut(s) 458
Hpy8I GTNNAC 1 cut(s) 193
HpyAV CCTTC 3 cut(s) 386, 418, 486
HpyCH4IV ACGT 2 cut(s) 149, 481
HpyF10VI GCNNNNNNNGC 1 cut(s) 91
HpySE526I ACGT 2 cut(s) 149, 481
Hsp92I GRCGYC 1 cut(s) 149
Hsp92II CATG 1 cut(s) 114
Kzo9I GATC 3 cut(s) 323, 347, 362
LpnPI CCDG 8 cut(s) 74, 219, 225, 276, 300, 330, 377, 471
MaeI CTAG 2 cut(s) 80, 236
MaeII ACGT 2 cut(s) 149, 481
MaeIII GTNAC 2 cut(s) 268, 318
MalI GATC 3 cut(s) 325, 349, 364
MboI GATC 3 cut(s) 323, 347, 362
MboII GAAGA 3 cut(s) 163, 449, 459
MluCI AATT 3 cut(s) 24, 35, 502
MnlI CCTC 3 cut(s) 391, 394, 403
MroXI GAANNNNTTC 1 cut(s) 56
MseI TTAA 2 cut(s) 27, 338
MspI CCGG 1 cut(s) 61
MwoI GCNNNNNNNGC 1 cut(s) 91
NdeII GATC 3 cut(s) 323, 347, 362
NlaIII CATG 1 cut(s) 114
PdmI GAANNNNTTC 1 cut(s) 56
Ple19I CGATCG 1 cut(s) 326
PshAI GACNNNNGTC 1 cut(s) 70
PshBI ATTAAT 1 cut(s) 27
PvuI CGATCG 1 cut(s) 326
SaqAI TTAA 2 cut(s) 27, 338
Sau3AI GATC 3 cut(s) 323, 347, 362
SetI ASST 8 cut(s) 152, 241, 251, 265, 370, 465, 472, 484
SfcI CTRYAG 1 cut(s) 207
SmlI CTYRAG 1 cut(s) 219
SmoI CTYRAG 1 cut(s) 219
Sse9I AATT 3 cut(s) 24, 35, 502
SsiI CCGC 1 cut(s) 395
SspI AATATT 1 cut(s) 168
SspMI CTAG 2 cut(s) 80, 236
StyI CCWWGG 1 cut(s) 47
TaiI ACGT 2 cut(s) 152, 484
TaqI TCGA 2 cut(s) 361, 445
TasI AATT 3 cut(s) 24, 35, 502
Tru1I TTAA 2 cut(s) 27, 338
Tru9I TTAA 2 cut(s) 27, 338
TspDTI ATGAA 2 cut(s) 450, 495
VspI ATTAAT 1 cut(s) 27
XmiI GTMKAC 1 cut(s) 192
XmnI GAANNNNTTC 1 cut(s) 56
XspI CTAG 2 cut(s) 80, 236
ZraI GACGTC 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.