Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0016844

Physical Location & Seq

Genomic Coordinates Reverse (-)

5987611 .. 5989210

Gene Structure 1600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG081900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGTCTTGCAGCACTGCTATTATAACCACCATAGAGAACAACCATACAAATGATGATGCACTATCTAATTCTTGTTTTCAAACCCTAGATGACCAGCAAAGAAATAGTAGCTTAAGATCATCAAGAAATGACAGTATATCTGAGAGTGTTTGGTTCTTCAAAAAATATCTGTTGACAAAAAATCAAAACAACATGGATGCTATAAATGTGGAAATTAATCGCAAATTAGAGCTCCCTTGGAATAACTTCCGACGACGCCCGTCTCTGCTAGAGCAAGTGTTGCTTCCACAACTACAATCATGTGGTGAAGTAGAAGCAGCTCCATCAAACGACAAGACGTCAAAACAACTCACAATATTCTTCAATGGGGTTATCAATGTCTACGACAACATTCCTGTAGATAAGGCTCAAGCGATTATGCGTCTAGCTGGTGAAAGCTCATTACTGAAACCTGTGGTTGCAGAAAGGCCAAAGCCAGATGTGAGAAAACCATCTAACAAATCAAAGTTACGATCGGCTTCCAAGTTAAGAGCAGGAATACCTATGGCAAGAAGATACTCTCTGCAATGTTTTCTTGAAAAGCGTAGGGACAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

198

Amino Acids

22.6

Weight (kDa)

9.69

Isoelectric Point (pI)

62.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	113 - 144	1.1e-14	tify domain
Jas_motif	PF09425	181 - 198	4.9e-08	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11290
malus_domestica	MD15G1434400.v1.1
prunus_persica	Prupe.1G578500_v2.0.a1 Prupe.1G578500_v2.0.a1
pyrus_communis	pycom15g38350
rosa_laevigata	RLG00000004834
rosa_roxburghii	Rroxscaffold_3G00268040
rosa_rugosa	Rorug06G0475200
rosa_samantha	Rh7AG065900 Rh7BG081800 Rh7CG081900 Rh7DG082900
rosa_wichuraiana	Rw7G006890 Rw7G007110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	23
AatII	GACGTC	1 cut(s)	341
AccI	GTMKAC	1 cut(s)	381
AcyI	GRCGYC	2 cut(s)	256, 338
AflII	CTTAAG	1 cut(s)	112
AgsI	TTSAA	4 cut(s)	80, 160, 364, 578
AhdI	GACNNNNNGTC	1 cut(s)	337
AluBI	AGCT	5 cut(s)	111, 232, 320, 428, 438
AluI	AGCT	5 cut(s)	111, 232, 320, 428, 438
Alw21I	GWGCWC	1 cut(s)	234
Alw26I	GTCTC	1 cut(s)	267
AoxI	GGCC	1 cut(s)	467
ApeKI	GCWGC	2 cut(s)	9, 317
AseI	ATTAAT	1 cut(s)	216
Asp700I	GAANNNNTTC	1 cut(s)	245
AsuHPI	GGTGA	2 cut(s)	317, 443
BanII	GRGCYC	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	234
BbvI	GCAGC	2 cut(s)	21, 329
BccI	CCATC	2 cut(s)	331, 499
BcoDI	GTCTC	1 cut(s)	267
BfaI	CTAG	3 cut(s)	86, 269, 425
BfmI	CTRYAG	1 cut(s)	396
BfrI	CTTAAG	1 cut(s)	112
BisI	GCNGC	2 cut(s)	10, 318
BlsI	GCNGC	2 cut(s)	11, 319
BmeRI	GACNNNNNGTC	1 cut(s)	337
BmsI	GCATC	2 cut(s)	46, 187
BoxI	GACNNNNGTC	1 cut(s)	259
BpuEI	CTTGAG	1 cut(s)	393
BsaHI	GRCGYC	2 cut(s)	256, 338
BsaJI	CCNNGG	1 cut(s)	236
Bse3DI	GCAATG	1 cut(s)	572
BseDI	CCNNGG	1 cut(s)	236
BseGI	GGATG	1 cut(s)	202
BseMI	GCAATG	1 cut(s)	572
BseMII	CTCAG	1 cut(s)	132
BseXI	GCAGC	2 cut(s)	21, 329
Bsh1285I	CGRYCG	1 cut(s)	515
BshFI	GGCC	1 cut(s)	469
BsiEI	CGRYCG	1 cut(s)	515
BsiHKAI	GWGCWC	1 cut(s)	234
BsmAI	GTCTC	1 cut(s)	267
BsmBI	CGTCTC	1 cut(s)	267
BsnI	GGCC	1 cut(s)	469
Bsp1286I	GDGCHC	1 cut(s)	234
Bsp143I	GATC	2 cut(s)	116, 512
BspANI	GGCC	1 cut(s)	469
BspCNI	CTCAG	1 cut(s)	133
BspTI	CTTAAG	1 cut(s)	112
BsrDI	GCAATG	1 cut(s)	572
BssECI	CCNNGG	1 cut(s)	236
BssMI	GATC	2 cut(s)	116, 512
BssNI	GRCGYC	2 cut(s)	256, 338
BssT1I	CCWWGG	1 cut(s)	236
Bst4CI	ACNGT	1 cut(s)	134
BstACI	GRCGYC	2 cut(s)	256, 338
BstAFI	CTTAAG	1 cut(s)	112
BstAPI	GCANNNNNTGC	1 cut(s)	280
BstDEI	CTNAG	1 cut(s)	141
BstF5I	GGATG	1 cut(s)	202
BstKTI	GATC	2 cut(s)	119, 515
BstMAI	GTCTC	1 cut(s)	267
BstMBI	GATC	2 cut(s)	116, 512
BstMCI	CGRYCG	1 cut(s)	515
BstMWI	GCNNNNNNNGC	1 cut(s)	280
BstPAI	GACNNNNGTC	1 cut(s)	259
BstSFI	CTRYAG	1 cut(s)	396
BstV1I	GCAGC	2 cut(s)	21, 329
BsuRI	GGCC	1 cut(s)	469
BtsCI	GGATG	1 cut(s)	202
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	1 cut(s)	12
CseI	GACGC	2 cut(s)	264, 410
CviAII	CATG	2 cut(s)	193, 300
CviJI	RGCY	9 cut(s)	111, 232, 320, 407, 428, 438, 469, 475, 518
CviKI_1	RGCY	9 cut(s)	111, 232, 320, 407, 428, 438, 469, 475, 518
DdeI	CTNAG	1 cut(s)	141
DpnI	GATC	2 cut(s)	118, 514
DpnII	GATC	2 cut(s)	116, 512
DriI	GACNNNNNGTC	1 cut(s)	337
Eam1105I	GACNNNNNGTC	1 cut(s)	337
Ecl136II	GAGCTC	1 cut(s)	232
Eco130I	CCWWGG	1 cut(s)	236
Eco24I	GRGCYC	1 cut(s)	234
Eco53kI	GAGCTC	1 cut(s)	232
EcoICRI	GAGCTC	1 cut(s)	232
EcoT14I	CCWWGG	1 cut(s)	236
EcoT38I	GRGCYC	1 cut(s)	234
ErhI	CCWWGG	1 cut(s)	236
Esp3I	CGTCTC	1 cut(s)	267
FaeI	CATG	2 cut(s)	196, 303
FaiI	YATR	9 cut(s)	23, 32, 45, 137, 194, 203, 301, 419, 545
FalI	AAGNNNNNCTT	2 cut(s)	267, 299
FatI	CATG	2 cut(s)	192, 299
FblI	GTMKAC	1 cut(s)	381
Fnu4HI	GCNGC	2 cut(s)	10, 318
FokI	GGATG	1 cut(s)	209
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	2 cut(s)	10, 318
FspBI	CTAG	3 cut(s)	86, 269, 425
GluI	GCNGC	2 cut(s)	10, 318
HaeIII	GGCC	1 cut(s)	469
HgaI	GACGC	2 cut(s)	264, 410
Hin1I	GRCGYC	2 cut(s)	256, 338
Hin1II	CATG	2 cut(s)	196, 303
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HphI	GGTGA	2 cut(s)	317, 443
Hpy166II	GTNNAC	2 cut(s)	174, 382
Hpy188I	TCNGA	2 cut(s)	142, 251
Hpy188III	TCNNGA	2 cut(s)	123, 575
Hpy8I	GTNNAC	2 cut(s)	174, 382
Hpy99I	CGWCG	2 cut(s)	255, 258
HpyCH4III	ACNGT	1 cut(s)	134
HpyCH4IV	ACGT	1 cut(s)	338
HpyCH4V	TGCA	4 cut(s)	9, 59, 461, 565
HpyF10VI	GCNNNNNNNGC	1 cut(s)	280
HpyF3I	CTNAG	1 cut(s)	141
HpySE526I	ACGT	1 cut(s)	338
Hsp92I	GRCGYC	2 cut(s)	256, 338
Hsp92II	CATG	2 cut(s)	196, 303
Kzo9I	GATC	2 cut(s)	116, 512
LmnI	GCTCC	2 cut(s)	237, 325
LpnPI	CCDG	7 cut(s)	107, 408, 414, 465, 489, 519, 577
Lsp1109I	GCAGC	2 cut(s)	21, 329
LweI	GCATC	2 cut(s)	46, 187
MaeI	CTAG	3 cut(s)	86, 269, 425
MaeII	ACGT	1 cut(s)	338
MaeIII	GTNAC	1 cut(s)	507
MalI	GATC	2 cut(s)	118, 514
MboI	GATC	2 cut(s)	116, 512
MboII	GAAGA	3 cut(s)	148, 352, 564
MhlI	GDGCHC	1 cut(s)	234
MluCI	AATT	3 cut(s)	67, 213, 224
MmeI	TCCRAC	1 cut(s)	274
MroXI	GAANNNNTTC	1 cut(s)	245
MseI	TTAA	3 cut(s)	113, 216, 527
MslI	CAYNNNNRTG	1 cut(s)	48
MspCI	CTTAAG	1 cut(s)	112
MwoI	GCNNNNNNNGC	1 cut(s)	280
NdeII	GATC	2 cut(s)	116, 512
NlaIII	CATG	2 cut(s)	196, 303
PdmI	GAANNNNTTC	1 cut(s)	245
PkrI	GCNGC	2 cut(s)	11, 319
Ple19I	CGATCG	1 cut(s)	515
PshAI	GACNNNNGTC	1 cut(s)	259
PshBI	ATTAAT	1 cut(s)	216
PsiI	TTATAA	1 cut(s)	23
Psp124BI	GAGCTC	1 cut(s)	234
PvuI	CGATCG	1 cut(s)	515
RseI	CAYNNNNRTG	1 cut(s)	48
SacI	GAGCTC	1 cut(s)	234
SaqAI	TTAA	3 cut(s)	113, 216, 527
SatI	GCNGC	2 cut(s)	10, 318
Sau3AI	GATC	2 cut(s)	116, 512
SduI	GDGCHC	1 cut(s)	234
SetI	ASST	9 cut(s)	113, 234, 322, 341, 430, 440, 454, 544, 596
SfaNI	GCATC	2 cut(s)	46, 187
SfcI	CTRYAG	1 cut(s)	396
SmiMI	CAYNNNNRTG	1 cut(s)	48
SmlI	CTYRAG	2 cut(s)	112, 408
SmoI	CTYRAG	2 cut(s)	112, 408
Sse9I	AATT	3 cut(s)	67, 213, 224
SspI	AATATT	1 cut(s)	357
SspMI	CTAG	3 cut(s)	86, 269, 425
SstI	GAGCTC	1 cut(s)	234
StyI	CCWWGG	1 cut(s)	236
TaaI	ACNGT	1 cut(s)	134
TaiI	ACGT	1 cut(s)	341
TasI	AATT	3 cut(s)	67, 213, 224
Tru1I	TTAA	3 cut(s)	113, 216, 527
Tru9I	TTAA	3 cut(s)	113, 216, 527
TscAI	CASTG	1 cut(s)	19
TseI	GCWGC	2 cut(s)	9, 317
TspRI	CASTG	1 cut(s)	19
Vha464I	CTTAAG	1 cut(s)	112
VspI	ATTAAT	1 cut(s)	216
XmiI	GTMKAC	1 cut(s)	381
XmnI	GAANNNNTTC	1 cut(s)	245
XspI	CTAG	3 cut(s)	86, 269, 425
ZraI	GACGTC	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.